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Global habitat degradation heightens the need to better understand patterns of genetic connectivity and diversity of marine biota across geographical ranges to guide conservation efforts. Corals across the Red Sea are subject to pronounced environmental differences, but studies so far suggest that animal populations are largely connected, excepting evidence for a genetic break between the northern-central and southern regions. Here, we investigated population structure and holobiont assemblage of two common pocilloporid corals, Pocillopora verrucosa and Stylophora pistillata, across the Red Sea. We found little evidence for population differentiation in P. verrucosa, except for the southernmost site. Conversely, S. pistillata exhibited a complex population structure with evidence for within-reef and regional genetic differentiation, in line with differences in their reproductive mode (P. verrucosa is a broadcast spawner and S. pistillata is a brooder). Analysis for genomic loci under positive selection identified 85 sites (18 of which were in coding sequences) that distinguished the southern P. verrucosa population from the remainder of the Red Sea population. By comparison, we found 128 loci (24 of which were residing in coding sequences) in S. pistillata with evidence for local adaptation at various sites. Functional annotation of the underlying proteins revealed putative roles in the response to stress, lipid metabolism, transport, cytoskeletal rearrangement, and ciliary function (among others). Microbial assemblages of both coral species showed pervasive association with microalgal symbionts from the genus Symbiodinium (former clade A) and bacteria from the genus Endozoicomonas that exhibited significant differences according to host genotype and environment. The disparity of population genetic and holobiont assemblage patterns even between closely related species (family Pocilloporidae) highlights the need for multispecies investigations to better understand the role of the environment in shaping evolutionary trajectories. It further emphasizes the importance of networks of reef reserves to achieve conservation of genetic variants critical to the future survival of coral ecosystems. published

Biotechnology & bioengineering 120(5), 1269-1287 (2023). doi:10.1002/bit.28334, Published by Wiley, New York, NY [u.a.]

Elongation factors modulate the efficiency of mRNA synthesis by RNA polymerase II (RNAPII) in the context of chromatin, thus contributing to implement proper gene expression programmes. The zinc-finger protein elongation factor 1 (ELF1) is a conserved transcript elongation factor (TEF), whose molecular function so far has not been studied in plants. Using biochemical approaches, we examined the interaction of Arabidopsis ELF1 with DNA and histones in vitro and with the RNAPII elongation complex in vivo. In addition, cytological assays demonstrated the nuclear localisation of the protein, and by means of double-mutant analyses, interplay with genes encoding other elongation factors was explored. The genome-wide distribution of ELF1 was addressed by chromatin immunoprecipitation. ELF1 isolated from Arabidopsis cells robustly copurified with RNAPII and various other elongation factors including SPT4-SPT5, SPT6, IWS1, FACT and PAF1C. Analysis of a CRISPR-Cas9-mediated gene editing mutant of ELF1 revealed distinct genetic interactions with mutants deficient in other elongation factors. Moreover, ELF1 associated with genomic regions actively transcribed by RNAPII. However, ELF1 occupied only c. 33% of the RNAPII transcribed loci with preference for inducible rather than constitutively expressed genes. Collectively, these results establish that Arabidopsis ELF1 shares several characteristic attributes with RNAPII TEFs.

1. Colourful patterns on flowers are thought to benefit both pollinators and the plants they visit, by increasing the plants' pollination success via an increased foraging efficiency of the pollinators. This increased efficiency is assumed to result from a guidance effect of the flower patterns, correspondingly termed ‘nectar guides’, which indicate the position of the nectary to visiting pollinators, thus reducing their flower handling time.2. Although it is well established that flower patterns play an important role in flower choice, the mechanisms by which they improve the foraging efficiency of flower-visiting insects remain poorly understood.3. In this study, we quantified the contributions of patterns to all phases of flower interaction in the buff-tailed bumblebee Bombus terrestris. We analysed the bees' flight paths, as well as landing positions and walking tracks on artificial flowers with different pattern types.4. We reveal that flower patterns reduced the overall flower handling time of the bees by up to 30%, by guiding their approach flight, landing positions and departure decisions. Surprisingly, we observed no improvement in nectary discovery time after the bees landed on the flower.5. Since we tested experienced foragers, which represent the majority of insect pollinators active in nature, the newly described nectary-independent guidance effects of flower patterns are of high ecological relevance. published

Pathogenic bacteria possess a great potential of causing infectious diseases and represent a serious threat to human and animal health. Understanding the molecular basis of infection development can provide new valuable strategies for disease prevention and better control. In host‐pathogen interactions, actin‐cytoskeletal dynamics play a crucial role in the successful adherence, invasion, and intracellular motility of many intruding microbial pathogens. Cortactin, a major cellular factor that promotes actin polymerization and other functions, appears as a central regulator of host‐pathogen interactions and different human diseases including cancer development. Various important microbes have been reported to hijack cortactin signaling during infection. The primary regulation of cortactin appears to proceed via serine and/or tyrosine phosphorylation events by upstream kinases, acetylation, and interaction with various other host proteins, including the Arp2/3 complex, filamentous actin, the actin nucleation promoting factor N‐WASP, focal adhesion kinase FAK, the large GTPase dynamin‐2, the guanine nucleotide exchange factor Vav2, and the actin‐stabilizing protein CD2AP. Given that many signaling factors can affect cortactin activities, several microbes target certain unique pathways, while also sharing some common features. Here we review our current knowledge of the hallmarks of cortactin as a major target for eminent Gram‐negative and Gram‐positive bacterial pathogens in humans.

Aim Global warming is assumed to restructure mountain insect communities in space and time. Theory and observations along climate gradients predict that insect abundance and richness, especially of small‐bodied species, will increase with increasing temperature. However, the specific responses of single species to rising temperatures, such as spatial range shifts, also alter communities, calling for intensive monitoring of real‐world communities over time. Location German Alps and pre‐alpine forests in south‐east Germany. Methods We empirically examined the temporal and spatial change in wild bee communities and its drivers along two largely well‐protected elevational gradients (alpine grassland vs. pre‐alpine forest), each sampled twice within the last decade. Results We detected clear abundance‐based upward shifts in bee communities, particularly in cold‐adapted bumble bee species, demonstrating the speed with which mobile organisms can respond to climatic changes. Mean annual temperature was identified as the main driver of species richness in both regions. Accordingly, and in large overlap with expectations under climate warming, we detected an increase in bee richness and abundance, and an increase in small‐bodied species in low‐ and mid‐elevations along the grassland gradient. Community responses in the pre‐alpine forest gradient were only partly consistent with community responses in alpine grasslands. Main Conclusion In well‐protected temperate mountain regions, small‐bodied bees may initially profit from warming temperatures, by getting more abundant and diverse. Less severe warming, and differences in habitat openness along the forested gradient, however, might moderate species responses. Our study further highlights the utility of standardized abundance data for revealing rapid changes in bee communities over only one decade.

Background and Objectives Due to insufficient resolution, $^{1}$H nuclear magnetic resonance (NMR) spectroscopy-based methods are limited to quantify carbohydrates. In the past, heteronuclear single quantum coherence (HSQC)-based methods were demonstrated to be superior as the second dimension greatly improves resolution. However, whether these experiments are also suitable to determine structurally similar oligosaccharides such as raffinose family oligosaccharides (RFO) still needs to be demonstrated. Findings By optimizing NMR parameters, well resolved signals for the analysis of glucose, fructose, galactose, sucrose and the RFO raffinose, stachyose, and verbascose were identified. Application of fast HSQC methods in combination with nonuniform sampling enables analyses of sucrose and RFO in pulses (blue lupin seeds, red lentils, kidney beans) within 24 min. If the analytes are present at levels greater than 0.5 g/100 g, HSQC-based methods provide data equivalent to an anion-exchange chromatography-based reference method. Conclusions High resolution fast HSQC-based approaches are suitable tools to analyze complex carbohydrate mixtures as demonstrated for RFO in different pulses. Significance and Novelty Fast HSQC experiments were applied for the first time to analyze structurally similar oligosaccharides. In the future, this approach will be a most valuable tool to analyze complex mixtures of carbohydrates in food products.

Plant-parasitic nematodes cause devastating agricultural damage worldwide. Only a few synthetic nematicides can be used and their application is limited in fields. Therefore, there is a need for sustainable and environment-friendly alternatives. Nematode-trapping fungi (NTF) are natural predators of nematodes. They capture and digest them with their hyphae and are starting to being used as bio-control agents. In this study, we applied the NTF Arthrobotrys flagrans (Duddingtonia flagrans) against the wine pathogenic nematode Xiphinema index. A. flagrans reduced the number of X. index juveniles in pot cultures of Ficus carica, an alternative host plant for X. index, significantly. Sodium-alginate pellets with A. flagrans spores were produced for vineyard soil inoculation under laboratory conditions. The NTF A. conoides, A. musiformis and A. superba were enriched from several soil samples, showing their natural presence. Trap formation is an energy-consuming process and depends upon various biotic and abiotic stimuli. Here, we show that bacteria of the genus Delftia, Bacillus, Pseudomonas, Enterobacter and Serratia induced trap formation in NTF like A. conoides and A. oligospora but not in A. flagrans in the absence of nematodes. The application of NTF along with such bacteria could be a combinatorial way of efficient biocontrol in nematode-infested soil.

Extracellular production of target proteins simplifies downstream processing due to obsolete cell disruption. However, optimal combinations of a heterologous protein, suitable signal peptide and secretion host can currently not be predicted, resulting in large strain libraries that need to be tested. On the experimental side, this challenge can be tackled by miniaturization, parallelization and automation, which provide high-throughput screening data. These data need to be condensed into a candidate ranking for decision making to focus bioprocess development on the most promising candidates. We screened for Bacillus subtilis signal peptides mediating Sec secretion of two polyethylene terephthalate degrading enzymes (PETases), leaf-branch compost cutinase (LCC) and polyester hydrolase (PE-H) mutants, by Corynebacterium glutamicum. We developed a fully automated screening process and constructed an accompanying Bayesian statistical modeling framework, which we applied in screenings for highest activity in 4-nitrophenyl palmitate degradation. In contrast to classical evaluation methods, batch effects and biological errors are taken into account and their uncertainty is quantified. Within only two rounds of screening, the most suitable signal peptide was identified for each PETase. Results from LCC secretion in microliter-scale cultivation were shown to be scalable to laboratory-scale bioreactors. This work demonstrates an experiment-modeling loop that can accelerate early-stage screening in a way that experimental capacities are focused to the most promising strain candidates. Combined with high-throughput cloning, this paves the way for using large strain libraries of several hundreds of strains in a Design-Build-Test-Learn approach.

Salt stress is a major abiotic stress, responsible for declining agricultural productivity. Roots are regarded as hubs for salt detoxification, however, leaf salt concentrations may exceed those of roots. How mature leaves manage acute sodium chloride (NaCl) stress is mostly unknown. To analyze the mechanisms for NaCl redistribution in leaves, salt was infiltrated into intact tobacco leaves. It initiated pronounced osmotically‐driven leaf movements. Leaf downward movement caused by hydro‐passive turgor loss reached a maximum within 2 h. Salt‐driven cellular water release was accompanied by a transient change in membrane depolarization but not an increase in cytosolic calcium ion (Ca\(^{2+}\)) level. Nonetheless, only half an hour later, the leaves had completely regained turgor. This recovery phase was characterized by an increase in mesophyll cell plasma membrane hydrogen ion (H\(^{+}\)) pumping, a salt uptake‐dependent cytosolic alkalization, and a return of the apoplast osmolality to pre‐stress levels. Although, transcript numbers of abscisic acid‐ and Salt Overly Sensitive pathway elements remained unchanged, salt adaptation depended on the vacuolar H\(^{+}\)/Na\(^{+}\)‐exchanger NHX1. Altogether, tobacco leaves can detoxify sodium ions (Na\(^{+}\)) rapidly even under massive salt loads, based on pre‐established posttranslational settings and NHX1 cation/H+ antiport activity. Unlike roots, signaling and processing of salt stress in tobacco leaves does not depend on Ca\(^{2+}\) signaling.

The exponential increase in the human population in tandem with increased food demand has caused agriculture to be the global‐dominant form of land use. Afrotropical drylands are currently facing the loss of natural savannah habitats and agricultural intensification with largely unknown consequences for bees. Here we investigate the effects of agricultural intensification on bee assemblages in the Afrotropical drylands of northern Tanzania. We disentangled the direct effects of agricultural intensification and temperature on bee richness from indirect effects mediated by changes in floral resources. We collected data from 24 study sites representing three levels of management intensity (natural savannah, moderate intensive and highly intensive agriculture) spanning an extensive gradient of mean annual temperature (MAT) in northern Tanzania. We used ordinary linear models and path analysis to test the effects of agricultural intensity and MAT on bee species richness, bee species composition and body‐size variation of bee communities. We found that bee species richness increased with agricultural intensity and with increasing temperature. The effects of agricultural intensity and temperature on bee species richness were mediated by the positive effects of agriculture and temperature on the richness of floral resources used by bees. During the off‐growing season, agricultural land was characterized by an extensive period of fallow land holding a very high density of flowering plants with unique bee species composition. The increase in bee diversity in agricultural habitats paralleled an increasing variation of bee body sizes with agricultural intensification that, however, diminished in environments with higher temperatures. Synthesis and applications. Our study reveals that bee assemblages in Afrotropical drylands benefit from agricultural intensification in the way it is currently practiced. However, further land‐use intensification, including year‐round irrigated crop monocultures and excessive use of agrochemicals, is likely to exert a negative impact on bee diversity and pollination services, as reported in temperate regions. Moreover, several bee species were restricted to natural savannah habitats. To conserve bee communities and guarantee pollination services in the region, a mixture of savannah and agriculture, with long periods of fallow land should be maintained.

Green plants are equipped with photoreceptors that are capable of sensing radiation in the ultraviolet‐to‐blue and the red‐to‐far‐red parts of the light spectrum. However, plant cells are not particularly sensitive to green light (GL), and light which lies within this part of the spectrum does not efficiently trigger the opening of stomatal pores. Here, we discuss the current knowledge of stomatal responses to light, which are either provoked via photosynthetically active radiation or by specific blue light (BL) signaling pathways. The limited impact of GL on stomatal movements provides a unique option to use this light quality to control optogenetic tools. Recently, several of these tools have been optimized for use in plant biological research, either to control gene expression, or to provoke ion fluxes. Initial studies with the BL‐activated potassium channel BLINK1 showed that this tool can speed up stomatal movements. Moreover, the GL‐sensitive anion channel GtACR1 can induce stomatal closure, even at conditions that provoke stomatal opening in wild‐type plants. Given that crop plants in controlled‐environment agriculture and horticulture are often cultivated with artificial light sources (i.e. a combination of blue and red light from light‐emitting diodes), GL signals can be used as a remote‐control signal that controls stomatal transpiration and water consumption.

Many studies show that photodynamic inactivation (PDI) is a powerful tool for the fight against pathogenic, multiresistant bacteria and the closing of hygiene gaps. However, PDI studies have been frequently performed under standardized in vitro conditions comprising artificial laboratory settings. Under real-life conditions, however, PDI encounters substances like ions, proteins, amino acids and fatty acids, potentially hampering the efficacy of PDI to an unpredictable extent. Thus, we investigated PDI with the phenalene-1-one-based photosensitizer SAPYR against Escherichia coli and Staphylococcus aureus in the presence of calcium or magnesium ions, which are ubiquitous in potential fields of PDI applications like in tap water or on tissue surfaces. The addition of citrate should elucidate the potential as a chelator. The results indicate that PDI is clearly affected by such ubiquitous ions depending on its concentration and the type of bacteria. The application of citrate enhanced PDI, especially for Gram-negative bacteria at certain ionic concentrations (e.g. CaCl2 or MgCl2: 7.5 to 75 mmol L−1). Citrate also improved PDI efficacy in tap water (especially for Gram-negative bacteria) and synthetic sweat solution (especially for Gram-positive bacteria). In conclusion, the use of chelating agents like citrate may facilitate the application of PDI under real-life conditions.

Regulation of cellular catabolic metabolism in immune cells has recently become a major concept for resolution of inflammation. Nuclear receptors (NRs), including peroxisome proliferator activator receptors, 1,25-dihydroxyvitamin D (3) receptor, liver X receptors, glucocorticoid receptors, oestrogen-related receptor α and nuclear receptor 4A1, have been identified as major modulators of inflammation, affecting innate immune cells, such as macrophages. Evidence emerges on how NRs regulate cellular metabolism in macrophages during inflammatory processes and contribute to the resolution of inflammation. This could have new implications for our understanding of how NRs shape immune responses and inform anti-inflammatory drug design. This review will highlight the recent developments about NRs and their role in cellular metabolism in macrophages., publishedVersion

The mechanisms by which climatic changes influence ecosystem functions, that is, by a direct climatic control of ecosystem processes or by modifying richness and trait compositions of species communities, remain unresolved. This study is a contribution to this discourse by elucidating the linkages between climate, land use, biodiversity, body size and ecosystem functions. We disentangled direct climatic from biodiversity-mediated effects by using dung removal by dung beetles as a model system and by combining correlative field data and exclosure experiments along an extensive elevational gradient on Mt. Kilimanjaro, Tanzania. Dung removal declined with increasing elevation, being associated with a strong reduction in the richness and body size traits of dung beetle communities. Climate influenced dung removal rates by modifying biodiversity rather than by direct effects. The biodiversity-ecosystem effect was driven by a change in the mean body size of dung beetles. Dung removal rates were strongly reduced when large dung beetles were experimentally excluded. This study underscores that climate influences ecosystem functions mainly by modifying biodiversity and underpins the important role of body size for dung removal.Die Mechanismen, durch die Klimaveränderungen die Funktionen von Ökosystemen beeinflussen, d.h. entweder durch einen direkten Einfluss des Klimas auf Ökosystemfunktionen oder durch indirekte klimatische Effekte auf die Biodiversität und Merkmalszusammensetzung von Artengemeinschaften, sind noch nicht geklärt. Die vorliegende Studie leistet einen Beitrag zu diesem Diskurs, indem sie die Zusammenhänge zwischen Klima, Landnutzung, Artenvielfalt, Körpergröße und Ökosystemfunktionen untersucht. Um direkte Klimaeffekte von Biodiversitätseffekten zu unterscheiden, verwendeten wir das Modellsystem Dungabbau durch Dungkäfer. Wir kombinierten korrelative Felddaten und Experimente entlang eines ausgedehnten Höhengradienten auf dem Kilimandscharo in Tansania. Der Dungabbau nahm mit zunehmender Höhe ab, was mit einer starken Verringerung der Diversität und der Körpergröße der Dungkäfergemeinschaften einherging. Das Klima beeinflusste den Dungabbau indirekt über die Artenvielfalt und nicht durch direkte Effekte. Verantwortlich für den Biodiversitäts-Ökosystem-Effekt war die Körpergröße der Dungkäfer. Der Dungabbau war stark reduziert, wenn große Dungkäfer experimentell ausgeschlossen wurden. Diese Studie unterstreicht, dass das Klima vor allem indirekt über die Artenvielfalt auf Ökosystemfunktionen einwirkt und hebt die wichtige Rolle der Körpergröße der Dungkäfer für den Dungabbau hervor.

Ancient DNA (aDNA) has been applied to evolutionary questions across a wide variety of taxa. Here, we leverage aDNA from millennia-old coral fossil fragments for the first time to gain holistic insights into a rapidly declining western Atlantic reef ecosystem. We sampled four Acropora palmata fragments (dated 4215 BCE - 1099 CE) obtained from two Florida Keys reef cores. From these samples, we established it is possible to both sequence ancient DNA (aDNA) from reef cores and place the data in the context of modern-day genetic variation. We recovered varying amounts of nuclear DNA exhibiting the characteristic signatures of aDNA from all A. palmata fragments. To describe the holobiont sensu lato, which plays a crucial role in reef health, we utilized metagenome-assembled genomes as a reference to recover a large additional proportion of ancient microbial DNA from the samples. The samples shared many common microbes with modern-day coral holobionts from the same reef, suggesting remarkable holobiont stability over time. Comparing the ancient Acropora palmata data to whole-genome sequencing data from living acroporids, we found that while slightly separate, ancient samples were most closely related to individuals of their own species. Together, these results paint a broad picture of coral holobiont change over time and lay a foundation to study historical environmental stress and evolutionary constraints. By better understanding the past genetic pressures on coral, we can gain valuable insights into the adaptive potential and trajectories of reefs under changing climatic conditions in the future.

1. Biological invasions are key to understanding ecological processes that determine the formation of novel interactions. Alien species can negatively impact floral visitation to native species, but native species may also facilitate early establishment of closely related alien species by providing a preadapted pollinator community. We tested whether floral visitation to alien species depended on phylogenetic relatedness and floral similarity to native species.2. In a field experiment, we simulated the early stages of an invasion by adding potted alien plants into co-flowering native communities. We paired each alien plant with a host native plant, and recorded floral visitation to them for 3,068 hr (totalling 84,814 visits). We used 34 alien and 20 native species in 151 species combinations. We tested whether the number of floral visits to alien plants, the proportion of visits to alien plant relative to visits to both alien and native plants, and the similarity in flower visitor compositions of alien and native plants depended on phylogenetic and floral trait distances between alien and native species.3. Floral visitation to alien species was highest when they had intermediate floral trait distances to native species, and either low or high phylogenetic distances. Alien species received more similar flower-visitor groups to natives when they had low phylogenetic and either low or high floral trait distances to native species.4. Co-flowering native species may facilitate floral visitation to closely related alien species, and distantly related alien plants seem to avoid competition for flower visitors with native plants. Alien species with similar floral traits to natives compete with them for flower visitors, and alien species with dissimilar floral traits may not share flower visitors with native species. Alien species with intermediate floral trait distances to natives are most likely to receive flower visitors, as they are not too dissimilar and may still share flower visitors with native species, but not too similar to compete for flower visitors with them.5. The non-linear patterns between floral visitation and similarity of the alien and native species suggest that an interplay of facilitation and competition simultaneously drives the formation of novel plant-pollinator interactions. published

Environmental variability poses a range of challenges to foraging animals trying to meet their energetic needs. Where food patches are unpredictable but shareable, animals can use social information to locate patches more efficiently or reliably. However, resource unpredictability can be heterogeneous and complex. The behavioural strategies animals employ to exploit such resources also vary, particularly if, when, and where animals use available social information. We reviewed the literature on social information use by foraging animals and developed a novel framework that integrates four elements - (1) food resource persistence; (2) the relative value of social information use; (3) behavioural context (opportunistic or coordinated); and (4) location of social information use - to predict and characterize four strategies of social information use - (1) local enhancement; (2) group facilitation; (3) following; and (4) recruitment. We validated our framework by systematically reviewing the growing empirical literature on social foraging in bats, an ideal model taxon because they exhibit extreme diversity in ecological niche and experience low predation risk while foraging but function at high energy expenditures, which selects for efficient foraging behaviours. Our framework's predictions agreed with the observed natural behaviour of bats and identified key knowledge gaps for future studies. Recent advancements in technology, methods, and analysis will facilitate additional studies in bats and other taxa to further test the framework and our conception of the ecological and evolutionary forces driving social information use. Understanding the links between food distribution, social information use, and foraging behaviour will help elucidate social interactions, group structure, and the evolution of sociality for species across the animal kingdom. published

On‐site teaching at Ulm University was restricted in the summer semester (SS) 2020 due to the Corona pandemic. The biochemistry seminar “From gene to protein” in the 2nd preclinical semester, which had been successfully conducted as an Inverted Classroom (IC), had to be changed to an online concept. The aim of this study was to analyze the concept conversion in terms of students' satisfaction and knowledge acquisition. In the seminar, human medical students of the 2nd semester acquired biochemical and competency‐oriented learning content. In SS2019, the course was taught using the IC concept. For the conversion to the online format in the SS2020, alternative teaching materials were developed and used. Students' satisfaction was assessed by an evaluation questionnaire and knowledge acquisition was tested by a written biochemistry exam. For both teaching concepts a high level of satisfaction was detected. Individual evaluation criteria were evaluated similarly by the students for both concepts. The online concept led up to significantly higher biochemistry exam scores. Due to the high levels of students' satisfaction in both concepts and the results of the biochemistry exam, it can be concluded that online teaching offers a suitable substitute. Based on these results, it is worth to undertake further research on digitization of studies., image, publishedVersion

1. Terrestrial mammals shape their ecosystems, and mammalian community assemblages can be important indicators of ecosystem functioning and ecosystem changes over time. Numerous taxa of terrestrial mammals are currently threatened by habitat loss and face displacement to new geographical areas or systems to which they are less suited and where they may affect the original communities.2. Understanding past ecosystem changes is important for predicting future responses of species assemblages to changes in their environments. Thus, ecological and evolutionary history, as well as adaptive capacity, are important predictors of future population viability. Genomic and metagenomic approaches using environmental or ancient DNA offer a wealth of information regarding genome-wide variation of changing communities or of taxonomic groups over time, which may help explain past changes and predict future responses of communities to changes in their environment; however, to date, such studies are relatively scarce.3. We review studies on environmental DNA and environmental genomics of terrestrial mammals to assess the potential of such approaches regarding past, contemporary, and future terrestrial ecosystems, identify inherent challenges, and discuss potential applications. We elaborate on lessons to be learned from mammal genomics of past ecosystems and compare metabarcoding with general metagenetic and metagenomic techniques. We provide a comprehensive overview of current applications, challenges, and future potential of environmental DNA with regards to terrestrial mammals.4. As current major challenges regarding mammalian eDNA we identify its scarcity and patchy distribution, along with the persistent necessity of genomic reference data. While the latter are steadily increasing, the former can only be tackled by explicitly mapping the environment to gain understanding of spatial eDNA distribution. Such understanding may facilitate informed choices of sample sites and substrates and, together with new sequencing techniques, this can allow mammalian eDNA to be maximally exploited as a source of biodiversity data. published

Parents that kill and consume their offspring often appear to be acting against their own reproductive interests. Yet parent-offspring cannibalism is common and taxonomically widespread across the animal kingdom. In this review, I provide an overview of our current understanding of parent-offspring cannibalism, which has seen a proliferation in adaptive hypotheses over the past 20 years for why parents consume their own young. I review over four decades of research into this perplexing behaviour, drawing from work conducted on fishes, reptiles, insects, birds, and mammals among other taxa. Many factors have been hypothesised to explain parent-offspring cannibalism in nature, including poor parental energy reserves, small or large brood sizes, low or uncertain parentage, and high brood densities, and additional factors are still being uncovered. Parent-offspring cannibalism does not appear to have a single predominant explanation; rather, the factor, or set of factors, that govern its expression is largely taxon specific. Parents may either consume all offspring under their care (full-brood cannibalism) or consume a fraction of their offspring (partial brood cannibalism). These forms of cannibalism are thought to provide adaptive benefits to cannibals under a range of circumstances, primarily by allowing parents to allocate parental efforts more optimally - energy from eating (some of) one's current offspring can be redirected to other offspring, or to parental growth, survival, and ultimately to other future reproductive endeavours. Thus, parent-offspring cannibalism is a phenotypically plastic trait that responds to changing environmental, social, and physiological conditions. The expression of parent-offspring cannibalism in any given system is intimately linked to the reproductive value of current young relative to parents' expectations for future reproduction, and also to whether parental care is predominantly depreciable or non-depreciable. Furthermore, parent-offspring cannibalism has the potential to generate conflict between the sexes, and I briefly discuss some consequences of this conflict on patterns of mate choice. Finally, there still remain many aspects of this behaviour where our understanding is poor, and I highlight these topics to help guide future research. published

Migrating grazers and carnivores respond to seasonal changes in the environment and often match peaks in resource abundance. However, it is unclear if and how frugivorous animals use phenological events to time migration, especially in the tropics.The straw-colored fruit bat (Eidolon helvum), Africa’s most gregarious fruit bat, forms large seasonal colonies throughout much of sub-Saharan Africa. We hypothesized that aggregations of E. helvum match the timing of their migration with phenologies of plant growth or precipitation.Using monthly colony counts from across much of the species’ range, we matched peak colony size to landscape phenologies and explored the variation among colonies matching the overall closest phenological event.Peak colony size was closest to the peak instantaneous rate of green-up, and sites with closer temporal matching were associated with higher maximum greenness, short growing season, and larger peak colony size. Eidolon helvum seem to time their migrations to move into highly seasonal landscapes to exploit short-lived explosions of food and may benefit from collective sensing to time migrations.The link between rapid changes in colony size and phenological match may also imply potential collective sensing of the environment. Overall decreasing bat numbers along with various threats might cause this property of large colonies to be lost.Remote sensing data, although, indirectly linked to fruiting events, can potentially be used to globally describe and predict the migration of frugivorous species in a changing world. published

Establishment and development of gut microbiota during vertebrates' early life are likely to be important predictors of health and fitness. Host‐parental and host‐environment interactions are essential to these processes. In oviparous reptiles whose nests represent a source of the parent's microbial inocula, the relative role of host‐selection and stochastic environmental factors during gut microbial assemblage remains unknown. We sampled eggs incubated in artificial nests as well as hatchlings and juveniles (up to 30 days old) of the yellow‐spotted Amazon river turtle (Podocnemis unifilis) developing in tubs filled with river water. We examined the relative role of the internal egg microbiota and the abiotic environment on hatchling and juvenile turtle's cloacal microbiota assemblages during the first 30 days of development. A mean of 71% of ASVs in hatched eggs could be traced to the nest environmental microbiota and in turn a mean of 77% of hatchlings' cloacal ASVs were traced to hatched eggs. Between day 5 and 20 of juvenile turtle's development, the river water environment plays a key role in the establishment of the gut microbiota (accounting for a mean of 13%–34.6% of cloacal ASVs) and strongly influences shifts in microbial diversity and abundance. After day 20, shifts in gut microbiota composition were mainly driven by host‐selection processes. Therefore, colonization by environmental microbiota is key in the initial stages of establishing the host's gut microbiota which is subsequently shaped by host‐selection processes. Our study provides a novel quantitative understanding of the host‐environment interactions during gut microbial assemblage of oviparous reptiles., publishedVersion

Ocean warming is increasingly affecting marine ecosystems across the globe. Reef-building corals are particularly affected by warming, with mass bleaching events increasing in frequency and leading to widespread coral mortality. Yet, some corals can resist or recover from bleaching better than others. Such variability in thermal resilience could be critical to reef rersistence; however, the scientific community lacks standardized diagnostic approaches to rapidly and comparatively assess coral thermal vulnerability prior to bleaching events. We present the Coral Bleaching Automated Stress System (CBASS) as a low-cost, open-source, field-portable experimental system for rapid empirical assessment of coral thermal thresholds using standardized temperature stress profiles and diagnostics. The CBASS consists of four or eight flow-through experimental aquaria with independent water masses, lighting, and individual automated temperature controls capable of delivering custom modulating thermal profiles. The CBASS is used to conduct daily thermal stress exposures that typically include 3-h temperature ramps to multiple target temperatures, a 3-h hold period at the target temperatures, and a 1-h ramp back down to ambient temperature, followed by an overnight recovery period. This mimics shallow water temperature profiles observed in coral reefs and prompts a rapid acute heat stress response that can serve as a diagnostic tool to identify putative thermotolerant corals for in-depth assessments of adaptation mechanisms, targeted conservation, and possible use in restoration efforts. The CBASS is deployable within hours and can assay up to 40 coral fragments/aquaria/day, enabling high-throughput, rapid determination of thermal thresholds for individual genotypes, populations, species, and sites using a standardized experimental framework. published

To increase the process productivity and product quality of bioprocesses, the in-line monitoring of critical process parameters is highly important. For monitoring substrate, metabolite, and product concentrations, Raman spectroscopy is a commonly used Process Analytical Technology (PAT) tool that can be applied in-situ and non-invasively. However, evaluating bioprocess Raman spectra with a robust state-of-the-art statistical model requires effortful model calibration. In the present study, we in-line monitored a glucose to ethanol fermentation by Saccharomyces cerevisiae (S. cerevisiae) using Raman spectroscopy in combination with the physics-based Indirect Hard Modeling (IHM) and showed successfully that IHM is an alternative to statistical models with significantly lower calibration effort. The IHM prediction model was developed and calibrated with only 16 Raman spectra in total, which did not include any process spectra. Nevertheless, IHM's root mean square errors of prediction (RMSEPs) for glucose (3.68 g/L) and ethanol (1.69 g/L) were comparable to the prediction quality of similar studies that used statistical models calibrated with several calibration batches. Despite our simple calibration, we succeeded in developing a robust model for evaluating bioprocess Raman spectra., Biotechnology and Bioengineering, 120 (7), ISSN:0006-3592, ISSN:1097-0290

The recent development of tailored cytochrome enzymes has enabled “new-to-nature” reactivities, such as the biocatalytic formation of carbon-silicon bonds using the cytochrome c from Rhodothermus marinus. To maximise the potential of this remarkable biocatalyst by increasing its turnover numbers (TON) and to enable its reusability in continuous processes, we report the use of the SpyTag/SpyCatcher bioconjugation system to immobilise this enzyme. We successfully modified the enzyme with a SpyTag without significant effects on its catalytic activity. Even after immobilization on microparticles the enzyme retained 60 % activity. When the immobilized enzyme was used in sequential batch or continuous flow to produce an organosilicon, we observed up to 6-fold higher turnover numbers over a total period of 10 days compared to the free enzyme reaction, however we observed a drop in stereoselectivity under these conditions. This is the first report on the successful immobilisation of a carbon-silicon bond forming enzyme for the continuous, biocatalytic production of organosilicons.

Human activities affect biodiversity by reducing the area of habitats, altering their shape, and increasing their isolation. Ants are particularly sensitive to habitat fragmentation, as it may locally change abiotic conditions, the availability of food and nest sites, the abundance of mutualists, competitors and predators, and also restrict gene flow between patches. As a result, the genetic population and colony structure of ants is expected to show signs of fragmentation. In the present study, we investigated the impact of fragmentation on the ant Temnothorax crassispinus in 45 forest patches across the Franconian Jura, Germany. Based on 283 colonies, of which 156 were genetically analyzed, we evidenced the presence of two putative distinct genetic clusters in the study area. Both the nest densities and the presence of queen were impacted by the number of adjacent forest patches within 400 m around the focal patch, but neither by patch shape nor patch size. We could not detect any effect of fragmentation on the genetic diversity, probably because the high dispersal abilities of T. crassispinus counterbalance any detrimental genetic consequences of fragmentation. Nevertheless, fragmentation still impacts the species density as well as the social structure of its colonies. Further investigations regarding the drivers of occurrence at a finer spatial scale might clarify the role of edge effects on the occurrence of this species.

Polymer gels, consisting of cross-linked polymer network systems swollen by a solvent, show great potential in biomedicine, flexible electronics, and artificial muscles, due to their tissue-like mechanical properties. Due to the presence of a large amount of solvent, the improvement of the mechanical properties of the polymer gel is a challenge. Moreover, combining high toughness with useful properties, such as 3D printability or shape-memory, in one polymer gel system is even more challenging. In this study, a simple and efficient method is developed for the fabrication of tough polymer gels by polymerizing 2-hydroxyethyl methacrylate (HEMA) in a mixture of poly(ethylene glycol) (PEG) and poly(propylene glycol) (PPG). The polymerized elastic networkpresents distinct compatibility with PEG (compatible) and PPG (poorly compatible), resulting in in-situ phase separation at the microscale. The resulting phase-separated gel demonstrates high strength (8.0 MPa), favorable fracture strain (430%), and large toughness (17.0 MJ m−3). The separated hard phasewith a high glass transition temperature (75 °C) endows the whole soft polymer gel with the property of shape memory at room temperature. Finally, the fabrication of tunable tough PEGgels is combined with 3D printing as well as with shape memory properties, demonstrating the use of PEGgels for 4D printing.

Although a wide variety of nanoparticles (NPs) have been engineered for use as disease markers or drug delivery agents, the number of nanomedicines in clinical use has hitherto remained small. A key obstacle in nanomedicine development is the lack of a deep mechanistic understanding of NP interactions in the bio-environment. Here, the focus is on the biomolecular adsorption layer (protein corona), which quickly enshrouds a pristine NP exposed to a biofluid and modifies the way the NP interacts with the bio-environment. After a brief introduction of NPs for nanomedicine, proteins, and their mutual interactions, research aimed at addressing fundamental properties of the protein corona, specifically its mono-/multilayer structure, reversibility and irreversibility, time dependence, as well as its role in NP agglomeration, is critically reviewed. It becomes quite evident that the knowledge of the protein corona is still fragmented, and conflicting results on fundamental issues call for further mechanistic studies. The article concludes with a discussion of future research directions that should be taken to advance the understanding of the protein corona around NPs. This knowledge will provide NP developers with the predictive power to account for these interactions in the design of efficacious nanomedicines.

It has been suggested that establishment of one alien invader might promote further invasions. Such a so-called invasional meltdown could be mediated by differences in soil-legacy effects between alien and native plants. Whether such legacy effects might depend on the diversity of the invaded community has not been explored to date. Here, we conducted a two-phase plant-soil feedback experiment. In a soil-conditioning phase, we grew five alien and five native species as invaders in 21 communities of one, two or four species. In the subsequent test phase, we grew five alien and five native species on the conditioned soils. We found that growth of these test species was negatively affected by soils conditioned by both a community and an invader, and particularly if the previous invader was a conspecific (i.e. negative plant-soil feedback). Alien test species suffered less from soil-legacy effects of previous allospecific alien invaders than from the legacy effects of previous native invaders. However, this effect decreased when the soil had been co-conditioned by a multispecies community. Our findings suggest that plant-soil feedback-mediated invasional meltdown may depend on community diversity and therefore provide some evidence that diverse communities could increase resistance against subsequent alien invasions. published

Large bell‐shaped calcite formations called “Hells Bells” were discovered underwater in the stratified cenote El Zapote on the Yucatán Peninsula, Mexico. Together with these extraordinary speleothems, divers found a white, cloudy turbid layer into which some Hells Bells partially extend. Here, we address the central question if the formation of the turbid layer could be based on microbial activity, more specifically, on microbially induced calcite precipitation. Metagenomic and metatranscriptomic profiling of the microbial community in the turbid layer, which overlaps with the pelagic redoxcline in the cenote, revealed chemolithoautotrophic Hydrogenophilales and unclassified β‐Proteobacteria as the metabolic key players. Bioinformatic and hydrogeochemical data suggest chemolithoautotrophic oxidation of sulfide to zero‐valent sulfur catalyzed by denitrifying organisms due to oxygen deficiency. Incomplete sulfide oxidation via nitrate reduction and chemolithoautotrophy are both proton‐consuming processes, which increase the pH in the redoxcline favoring authigenic calcite precipitation and may contribute to Hells Bells growth. The observed mechanism of microbially induced calcite precipitation is potentially applicable to many other stagnant sulfate‐rich water bodies., Deutsche Forschungsgemeinschaft http://dx.doi.org/10.13039/501100001659, CONACYT‐FONCICYT‐DADC, https://doi.org/10.11588/data/TMYLWS, https://doi.org/10.11588/data/GYLDH5

The composition and richness of herbivore and plant assemblages change along climatic gradients, but knowledge about associated shifts in specialization is scarce and lacks controlling for the abundance and phylogeny of interaction partners. Thus, we aimed to test whether the specialization of phytophagous insects in insect‐plant interaction networks decreases toward cold habitats as predicted by the ‘altitude niche‐breadth hypothesis’ to forecast possible consequences of interaction rewiring under climate change. We used a non‐invasive, standardized metabarcoding approach to reconstruct dietary relationships of Orthoptera species as a major insect herbivore taxon along a broad temperature gradient (~12°C) in Southern Germany. Based on Orthoptera surveys, feeding observations, collection of fecal pellets from >3,000 individuals of 54 species, and parallel vegetation surveys on 41 grassland sites, we quantified plant resource availability and its use by herbivores. Herbivore assemblages were richer in species and individuals at sites with high summer temperatures, while plant richness peaked at intermediate temperatures. Corresponding interaction networks were most specialized in warm habitats. Considering phylogenetic relationships of plant resources, however, the specialization pattern was not linear but peaked at intermediate temperatures, mediated by herbivores feeding on a narrow range of phylogenetically related resources. Our study provides empirical evidence of resource specialization of insect herbivores along a climatic gradient, demonstrating that resource phylogeny, availability, and temperature interactively shape the specialization of herbivore assemblages. Instead of low specialization levels only in cold, harsh habitats, our results suggest increased generalist feeding due to intraspecific changes and compositional differences at both ends of the microclimatic gradient. We conclude that this nonlinear change of phylogeny‐based resource specialization questions predictions derived from the ‘altitude‐niche breadth hypothesis’ and highlights the currently limited understanding of how plant‐herbivore interactions will change under future climatic conditions.

The global impacts of climate change are evident in every marine ecosystem. On coral reefs, mass coral bleaching and mortality have emerged as ubiquitous responses to ocean warming, yet one of the greatest challenges of this epiphenomenon is linking information across scientific disciplines and spatial and temporal scales. Here we review some of the seminal and recent coral-bleaching discoveries from an ecological, physiological, and molecular perspective. We also evaluate which data and processes can improve predictive models and provide a conceptual framework that integrates measurements across biological scales. Taking an integrative approach across biological and spatial scales, using for example hierarchical models to estimate major coral-reef processes, will not only rapidly advance coral-reef science but will also provide necessary information to guide decision-making and conservation efforts. To conserve reefs, we encourage implementing mesoscale sanctuaries (thousands of km2 ) that transcend national boundaries. Such networks of protected reefs will provide reef connectivity, through larval dispersal that transverse thermal environments, and genotypic repositories that may become essential units of selection for environmentally diverse locations. Together, multinational networks may be the best chance corals have to persist through climate change, while humanity struggles to reduce emissions of greenhouse gases to net zero. published

Steel construction 15(2), 81-90 (2022). doi:10.1002/stco.202100040, Published by Wiley-VCH, Weinheim

Additive manufacturing (3D printing) enables the fabrication of highly customized and complex devices and is therefore increasingly used in the field of life sciences and biotechnology. However, the application of 3D-printed parts in these fields requires not only their biocompatibility but also their sterility. The most common method for sterilizing 3D-printed parts is heat steam sterilization—but most commercially available 3D printing materials cannot withstand high temperatures. In this study, a novel heat-resistant polyacrylate material for high-resolution 3D Multijet printing was evaluated for the first time for its resistance to heat steam sterilization and in vitro biocompatibility with mouse fibroblasts (L929), human embryonic kidney cells (HEK 293E), and yeast (Saccharomyces cerevisiae (S. cerevisiae)). Analysis of the growth and viability of L929 cells and the growth of S. cerevisiae confirmed that the extraction media obtained from 3D-printed parts had no negative effect on the aforementioned cell types, while, in contrast, viability and growth of HEK 293E cells were affected. No different effects of the material on the cells were found when comparing heat steam sterilization and disinfection with ethanol (70%, v/v). In principle, the investigated material shows great potential for high-resolution 3D printing of novel cell culture systems that are highly complex in design, customized and easily sterilizable—however, the biocompatibility of the material for other cell types needs to be re-evaluated.

Biodiversity and abundance of wildlife has dramatically declined in agricultural landscapes. Sown, short-lived wildflower (WF) strips along the margins of crop fields are a widespread and often subsidised in agri-environmental schemes, intended to enhance biodiversity, provide refuges for wild plant and arthropod populations and to provide ecosystem services to crops. Meanwhile, WF elements are also criticised, since their functionality decreases with plant succession, the removal of aged WF strip poses an ecological trap for the attracted arthropod populations and only common and mobile species benefit. Further, insects in WF strips are impacted by pesticides from agricultural fields due to shared boundaries with crop fields and by edge effects. The performance of the measure could be improved by combining several WF strips of different successional stages, each harbouring a unique community of plants and arthropods, into persistent, composite WF block, where successional stages exist in parallel. Monitoring data on many taxa in the literature shows, that a third of species are temporarily present in an ageing WF stip, thus offering composite WF blocks should increase cumulative species richness by 28%-39% compared to annual richness in WF strips. Persistence of composite WF blocks would offer reliable refuge for animal and plant populations, also supporting their predators and herbivores. Further, WF blocks have less boundaries to crops compared to WF strips of the same area, and are less impacted by edge effects and pesticides. Policy implications. Here I suggest a change of conservation practice changing from successional WF strips to composite WF blocks. By regular removal and replacement of aged WF strips either within the block (rotational) or at its margins (rolling), the habitat heterogeneity in composite WF block could be perpetuated. Rolling composite WF blocks change locations over years, and the original location can be reconverted to arable land while a nearby WF block is still available to wildlife. A change in agricultural schemes would be necessary, since in some European countries clustered WF strips are explicitly not subsidised.

1. Elton's diversity-invasibility hypothesis predicts that diverse communities are more resistant against alien invaders. However, observational studies frequently find positive relationships between the numbers of alien and native species. It has been suggested, but rarely tested, that environmental heterogeneity may cause such positive relationships.2. Here, we experimentally tested the effects of soil heterogeneity and diversity (species richness) on the invasibility of native communities. We first filled mesocosm pots with either a heterogeneous soil, consisting of one patch of sand, one patch of peat and one patch of an equal mixture of both substrates, or a homogeneous soil, consisting of the mixture only. Then, we planted those pots with 29 native communities consisting of one, four or eight species, and invaded them with populations of four individuals of one of five alien species.3. In the heterogeneous soils, individual alien plants benefited more strongly from the resource-rich peat soil than the native communities did. Moreover, in the mixture soil of the heterogeneous treatment, individual alien plant over-proportionally produced more biomass than in the mixture soil of the homogeneous treatment. Consequently, the populations of naturalized alien plants in each pot benefited from heterogeneous soil conditions, and this tended to be particularly the case when a native community was present. The native communities did not respond to soil heterogeneity, but they had a negative effect on the naturalized plants, irrespective of their diversity.4. Synthesis. Our results indicate that soil heterogeneity might alleviate the competitive effects of native communities on the alien invaders, as the latter took more advantage of the high resource patches than the natives did. The beneficial effect of heterogeneity on invasion success could thus explain why observational studies usually find positive relationships between the numbers of alien and native species. published

Home-range estimates are a common product of animal tracking data, as each range represents the area needed by a given individual. Population-level inference of home-range areas—where multiple individual home ranges are considered to be sampled from a population—is also important to evaluate changes over time, space or covariates such as habitat quality or fragmentation, and for comparative analyses of species averages. Population-level home-range parameters have traditionally been estimated by first assuming that the input tracking data were sampled independently when calculating home ranges via conventional kernel density estimation (KDE) or minimal convex polygon (MCP) methods, and then assuming that those individual home ranges were measured exactly when calculating the population-level estimates. This conventional approach does not account for the temporal autocorrelation that is inherent in modern tracking data, nor for the uncertainties of each individual home-range estimate, which are often large and heterogeneous. Here, we introduce a statistically and computationally efficient framework for the population-level analysis of home-range areas, based on autocorrelated kernel density estimation (AKDE), that can account for variable temporal autocorrelation and estimation uncertainty. We apply our method to empirical examples on lowland tapir Tapirus terrestris, kinkajou Potos flavus, white-nosed coati Nasua narica, white-faced capuchin monkey Cebus capucinus and spider monkey Ateles geoffroyi, and quantify differences between species, environments and sexes. Our approach allows researchers to more accurately compare different populations with different movement behaviours or sampling schedules while retaining statistical precision and power when individual home-range uncertainties vary. Finally, we emphasize the estimation of effect sizes when comparing populations, rather than mere significance tests. published

Group-living animals are often faced with complex reproductive decisions, namely how to partition within-group reproduction, how to obtain extra-group reproduction, and how these two means of reproduction should be balanced. The solutions to these questions can be difficult to predict because ecological conditions can affect the scopes for within-group and extra-group reproduction in complex ways. For example, individuals that are restricted from moving freely around their habitats may have limited extra-group reproductive opportunities, but at the same time, groups may live in close proximities to one another, which could potentially have the opposite effect. The group-living cichlid fish, Neolamprologus multifasciatus, experiences such ecological conditions, and we conducted an intensive genetic parentage analysis to investigate how reproduction is distributed within and among groups for both males and females. We found that cohabiting males live in ‘high-skew’ societies, where dominant males monopolize the majority of within-group reproduction, while females live in ‘low-skew’ societies, where multiple females can produce offspring concurrently. Despite extremely short distances separating groups, we inferred only very low levels of extra-group reproduction suggesting that subordinate males have very limited reproductive opportunities. A strength of our parentage analysis lies in its inclusion of individuals that spanned a wide age range, from young fry to adults. We outline the logistical circumstances when very young offspring may not always be accessible to parentage researchers, and present strategies to overcome the challenges of inferring mating patterns from a wide age range of offspring. published

Monoclonal antibodies (mAbs) are of great interest to the biopharmaceutical industry due to their widely used application as human therapeutic and diagnostic agents. As such, mAb require to exhibit human-like glycolization patterns. Therefore, recombinant Chinese hamster ovary (CHO) cells are the favored production organisms; many relevant biopharmaceuticals are already produced by this cell type. To optimize the mAb yield in CHO DG44 cells a corelation between stress-induced cell size expansion and increased specific productivity was investigated. CO

Artificial light at night (ALAN) has been and still is rapidly spreading and has become an important component of global change. Although numerous studies have tested its potential biological and ecological impacts on animals, very few studies have tested whether it affects alien and native plants differently. Furthermore, common plant species, and particularly common alien species, are often found to benefit more from additional resources than rare native and rare alien species. Whether this is also the case with regard to increasing light due to ALAN is still unknown. Here, we tested how ALAN affected the performance of common and rare alien and native plant species in Germany directly, and indirectly via flying insects. We grew five common alien, six rare alien, five common native, and four rare native plant species under four combinations of two ALAN (no ALAN vs. ALAN) and two insect-exclusion (no exclusion vs. exclusion) treatments, and compared their biomass production. We found that common plant species, irrespective of their origin, produced significantly more biomass than rare species and that this was particularly true under ALAN. Furthermore, alien species tended to show a slightly stronger positive response to ALAN than native species did (p = .079). Our study shows that common plant species benefited more from ALAN than rare ones. This might lead to competitive exclusion of rare species, which could have cascading impacts on other trophic levels and thus have important community-wide consequences when ALAN becomes more widespread. In addition, the slightly more positive response of alien species indicates that ALAN might increase the risk of alien plant invasions. published

Monosaccharides and disaccharides are important dietary components, but if insufficiently metabolized by some population subgroups, they are also linked to disease patterns. Thus, the correct analytical identification, quantification, and labeling of these food components are crucial to inform and potentially protect consumers. Enzymatic assays and high-performance anion-exchange chromatography with pulsed amperometric detection are established methods for the quantification of monosaccharides and disaccharides that, however, require long measuring times (60-180 min). Accelerated methods for the identification and quantification of the nutritionally relevant monosaccharides and disaccharides d-glucose, d-galactose, d-fructose, sucrose, lactose, and maltose were therefore developed. To realize this goal, the NMR experiments HSQC (heteronuclear single quantum coherence) and acceleration by sharing adjacent polarization (ASAP)-HSQC were applied. Measurement times were reduced to 27 and 6 min, respectively, by optimizing the interscan delay and applying non-uniform sampling. The optimized methods were used to quantify d-glucose, d-galactose, d-fructose, sucrose, and lactose in various dairy products. Results of the HSQC and ASAP-HSQC methods are equivalent to the results of the reference methods in terms of both precision and accuracy, demonstrating that these methods can be used to correctly analyze nutritionally relevant monosaccharides and disaccharides in short times.

1. Protection against desiccation and chemical communication are two fundamental functions of cuticular hydrocarbons (CHCs) in insects. In the parasitoid jewel wasp Nasonia vitripennis (Walker), characterised by a cosmopolitan distribution through largely different environments, CHCs function as universally recognised female sex pheromones. However, CHC uniformity as basis for sexual recognition may conflict with the desiccation protection function, expected to display considerable flexibility through adaptation to different environmental conditions. 2. We compared male and female CHC profiles of N. vitripennis across a wide latitudinal gradient in Europe and correlated their CHC variation with climatic factors associated with desiccation. Additionally, we tested male mate discrimination behaviour between populations to detect potential variations in female sexual attractiveness. 3. Results did not conform to the general expectation that longer, straight-chain CHCs occur in higher proportions in warmer and drier climates. Instead, unexpected environmental correlations of intermediate chain-length CHCs (C31) were found exclusively in females, potentially reflecting the different life histories of the sexes in N. vitripennis. 4. Furthermore, we found no indication of population-specific male mate preference, confirming the stability of female sexual attractiveness, likely conveyed through their CHC profiles. C31 mono- and C33 di-methyl-branched alkanes were consistently and most strongly associated with sexual dimorphism, suggesting their potential role in encoding the female-specific sexual signalling function. 5. Our study sheds light on how both adaptive flexibility and conserved sexual attractiveness can potentially be integrated and encoded in CHC profiles of N. vitripennis females across a wide distribution range in Europe.

Voltage‐gated proton channels (HV1) are expressed in eukaryotes, including basal hexapods and polyneopteran insects. However, currently, there is little known about HV1 channels in insects. A characteristic aspartate (Asp) that functions as the proton selectivity filter (SF) and the RxWRxxR voltage‐sensor motif are conserved structural elements in HV1 channels. By analysing Transcriptome Shotgun Assembly (TSA) databases, we found 33 polyneopteran species meeting these structural requirements. Unexpectedly, an unusual natural variation Asp to glutamate (Glu) at SF was found in Phasmatodea and Mantophasmatodea. Additionally, we analysed the expression and function of HV1 in the phasmatodean stick insect Extatosoma tiaratum (Et). EtHV1 is strongly expressed in nervous tissue and shows pronounced inward proton conduction. This is the first study of a natural occurring Glu within the SF of a functional HV1 and might be instrumental in uncovering the physiological function of HV1 in insects., We report the discovery of voltage‐gated proton channels (HV1) in polyneopteran insects. We found a novel, naturally occurring glutamate in the selectivity filter of HV1. We further characterized the HV1 of the phasmatodean Extatosoma tiaratum, EtHV1. This study provides the first step in the discovery of the physiological function of HV1 channels in insects and its relationship with their evolution.

Journal of industrial ecology (2023). doi:10.1111/jiec.13387, Published by Wiley-Blackwell, Oxford [u.a.]

Transcriptional elongation by RNA polymerase II (RNAPII) through chromatin is a dynamic and highly regulated step of eukaryotic gene expression. A combination of transcript elongation factors (TEFs) including modulators of RNAPII activity and histone chaperones facilitate efficient transcription on nucleosomal templates. Biochemical and genetic analyses, primarily performed in Arabidopsis, provided insight into the contribution of TEFs to establish gene expression patterns during plant growth and development. In addition to summarising the role of TEFs in plant gene expression, we emphasise in our review recent advances in the field. Thus, mechanisms are presented how aberrant intragenic transcript initiation is suppressed by repressing transcriptional start sites within coding sequences. We also discuss how transcriptional interference of ongoing transcription with neighbouring genes is prevented. Moreover, it appears that plants make no use of promoter-proximal RNAPII pausing in the way mammals do, but there are nucleosome-defined mechanism(s) that determine the efficiency of mRNA synthesis by RNAPII. Accordingly, a still growing number of processes related to plant growth, development and responses to changing environmental conditions prove to be regulated at the level of transcriptional elongation.

The beneficial effects of hair follicle stem cells in different animal models of nervous system conditions have been extensively studied. While chick embryo extract (CEE) has been used as a growth medium supplement for these stem cells, this is the first study to show the effect of CEE on them. The rat hair follicle stem cells were isolated and supplemented with 10% fetal bovine serum plus 10% CEE. The migration rate, proliferative capacity and multipotency were evaluated along with morphometric alteration and differentiation direction. The proteome analysis of CEE content identified effective factors of CEE that probably regulate fate and function of stem cells. The CEE enhances the migration rate of stem cells from explanted bulges as well as their proliferation, likely due to activation of AP-1 and translationally controlled tumour protein (TCTP) by thioredoxin found in CEE. The increased length of outgrowth may be the result of cyclic AMP response element binding protein (CREB) phosphorylation triggered by active CamKII contained in CEE. Further, CEE supplementation upregulates the expression of vascular endothelial growth factor (VEGF), brain-derived neurotrophic factor and glial cell line-derived neurotrophic factor. The elevated expression of target genes and proteins may be due to CREB, AP-1 and c-Myc activation in these stem cells. Given the increased transcript levels of neurotrophins, VEGF, and the expression of PDGFR-α, S100B, MBP and SOX-10 protein, it is possible that CEE promotes the fate of these stem cells towards Schwann cells.

Biologging devices are deployed on animals to collect ultra-fine-scale movement data that reveal subsecond patterns in locomotion or long-term patterns in motion and space use. Often these two data types, although complementary, are rarely collected within the same study, given the limiting factors of memory space, power requirements and the need to retrieve stored data from animals. Biologging requires a revolutionary advancement in data networking to overcome these restrictions that constrain big data collection; for the continuous recording and remote download of fine-scale movement and environmental data, from long-term deployments and multiple individuals. Here, we adopt a strategy from the Internet of Things and develop the use of Wi-Fi as a solution for big data biologging. Our 'WildFi' tag uses pre-existing, or easy-to-set-up, infrastructure in smartphones and Wi-Fi gateways. We demonstrate the power of memory management and an embedded modular software architecture for functionality, including collective data retrieval at multiple gateways. We find that Wi-Fi, together with smart embedded software, increases the retrieval efficiency of biologging data by orders of magnitude compared to other available systems: with a transmission speed of 230 kByte/s and range of 3000 times faster than LoRaWAN. Case studies on a domestic dog (Canis lupus familiaris), aviary-housed cockatiels (Nymphicus hollandicus) and free-roaming pangolins (Smutsia temminckii) demonstrate the functionality of the WildFi tag for remote and robust autonomous Wi-Fi data transmission under a range of conditions. Modularity in software and hardware allows for project-specific tailoring beyond reconfiguring sampling parameters of a biologger, which we encourage with open-source sharing of our architecture design. Enhanced communication between animal-attached devices, Wi-Fi infrastructure and smartphones, alongside smart and collaborative data retrieval, eases restrictions for big data collection in animal ecology., Methods in Ecology and Evolution, 14 (1), ISSN:2041-210X, ISSN:2041-2096

The submission contains following files: Branch_variables.xlsx Variables measured during for individual branches we studied. Each branch is characterized by Tree number and Branch number within the respective tree. The measured variables include leaf area (m2), induction treatment we applied (treatment/control), their height above ground (m), VOC emission level (Total area under the peaks of all VOCs we measured with GC-MS), VOC composition (similarity in VOC profiles emitted by the studied branches as measured on the first PCA axis), Leaf toughness (N), content of HHDPs (mg/g), content of total phenolics (mg/g), predation rates (0.00-1.00), herbivore preference (average area of leaf discs eaten (in mm) by Lymantria dispar in food-choice trials), herbivore abundance (number of caterpillars and sawfly larvae sampled from the given branch standardized by its leaf area), herbivore richness (species richness of caterpillars and sawfly larvae sampled from the given branch). VOCs.xlsx VOCs detected in our samples. Values show means ± st.dev. for control (C) and treated beaches (T) on individual trees. The reported values represent total areas under the peaks as measured with GC-MS. Insects.xlsx Leaf-chewing larvae sampled from treated and control branches on the studied trees. In total, we sampled 898 sawfly larvae and caterpillars. Four larvae with incomplete information on the host tree or branch were excluded from all analyses and are not shown in the data. The data on COI sequences used for insect identification including the standard fields for the BARCODE data standard are available on BOLD (www.boldsystems.org, dx.doi.org/10.5883/DS-LAK2019). Each species is characterized by its Order, Family, Species name, and Species code and the table shows the total number of individuals sampled from control (C) and treated (T) branches in the studied trees. &nbsp

Early endosomes (EEs) are part of the endocytic transport pathway and resemble the earliest class of transport vesicles between the internalization of extracellular material, their cellular distribution or vacuolar degradation. In filamentous fungi, EEs fulfill important functions in long distance transport of cargoes as mRNAs, ribosomes, and peroxisomes. Formation and maturation of early endosomes is controlled by the specific membrane-bound Rab-GTPase Rab5 and tethering complexes as CORVET (class C core vacuole/endosome tethering). In the basidiomycete Ustilago maydis, Rab5a is the prominent GTPase to recruit CORVET to EEs; in rab5a deletion strains, this function is maintained by the second EE-associated GTPase Rab5b. The tethering- and core-subunits of CORVET are essential, buttressing a central role for EE transport in U. maydis. The function of EEs in long distance transport is supported by the Nma1 protein that interacts with the Vps3 subunit of CORVET. The interaction stabilizes the binding of Vps3 to the CORVET core complex that is recruited to Rab5a via Vps8. Deletion of nma1 leads to a significantly reduced number of EEs, and an increased conversion rate of EEs to late endosomes. Thus, Nma1 modulates the lifespan of EEs to ensure their availability for the various long distance transport processes.