13 results on '"Siddiq S"'
Search Results
2. A systematic review of the management and outcomes of pregnancy in Glanzmann thrombasthenia
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SIDDIQ, S., primary, CLARK, A., additional, and MUMFORD, A., additional
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- 2011
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3. Marked discrepancy between coagulometric Protein C activity assays with the pro-thrombotic Protein C Asn2Ile substitution
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COOPER, P. C., primary, SIDDIQ, S., additional, MORSE, C., additional, NIGHTINGALE, J., additional, and MUMFORD, A. D., additional
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- 2011
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4. F8 and F9 mutations fail to co‐segregate in a family with co‐incident haemophilia A and B
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SIDDIQ, S., primary, MORSE, C., additional, GOODEVE, A., additional, PANAYI, M., additional, TAIT, R. C., additional, and MUMFORD, A., additional
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- 2010
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5. ICSI experience in pakistan: Male infertility, azoospermia, ICSI
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Khan, Y., primary, Siddiq, S., additional, and Khan, M., additional
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- 2000
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6. MR signature matching (MRSIGMA) implementation for true real-time free-breathing volumetric imaging with sub-200 ms latency on an MR-Linac.
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Siddiq S, Murray V, Tyagi N, Borman P, Gui C, Crane C, Wu C, and Otazo R
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- Humans, Motion, Image Processing, Computer-Assisted methods, Retrospective Studies, Image Interpretation, Computer-Assisted methods, Phantoms, Imaging, Magnetic Resonance Imaging methods, Imaging, Three-Dimensional, Respiration, Algorithms, Pancreatic Neoplasms diagnostic imaging
- Abstract
Purpose: Develop a true real-time implementation of MR signature matching (MRSIGMA) for free-breathing 3D MRI with sub-200 ms latency on the Elekta Unity 1.5T MR-Linac., Methods: MRSIGMA was implemented on an external computer with a network connection to the MR-Linac. Stack-of-stars with partial k
z sampling was used to accelerate data acquisition and ReconSocket was employed for simultaneous data transmission. Movienet network computed the 4D MRI motion dictionary and correlation analysis was used for signature matching. A programmable 4D MRI phantom was utilized to evaluate MRSIGMA with respect to a ground-truth translational motion reference. In vivo validation was performed on patients with pancreatic cancer, where 15 patients were employed to train Movienet and 7 patients to test the real-time implementation of MRSIGMA. Dice coefficients between real-time MRSIGMA and a retrospectively computed 4D reference were used to evaluate motion tracking performance., Results: Motion dictionary was computed in under 5 s. Signature acquisition and matching presented 173 ms latency on the phantom and 193 ms on patients. MRSIGMA presented a mean error of 1.3-1.6 mm for all phantom experiments, which was below the 2 mm acquisition resolution along the motion direction. The Dice coefficient over time between MRSIGMA and reference contours was 0.88 ± 0.02 (GTV), 0.87 ± 0.02(duodenum-stomach), and 0.78 ± 0.02(small bowel), demonstrating high motion tracking performance for both tumor and organs at risk., Conclusion: The real-time implementation of MRSIGMA enabled true real-time free-breathing 3D MRI with sub-200 ms imaging latency on a clinical MR-Linac system, which can be used for treatment monitoring, adaptive radiotherapy and dose accumulation mapping in tumors affected by respiratory motion., (© 2024 International Society for Magnetic Resonance in Medicine.)- Published
- 2024
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7. Movienet: Deep space-time-coil reconstruction network without k-space data consistency for fast motion-resolved 4D MRI.
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Murray V, Siddiq S, Crane C, El Homsi M, Kim TH, Wu C, and Otazo R
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- Imaging, Three-Dimensional methods, Motion, Acceleration, Image Processing, Computer-Assisted methods, Respiration, Magnetic Resonance Imaging methods, Respiratory-Gated Imaging Techniques methods
- Abstract
Purpose: To develop a novel deep learning approach for 4D-MRI reconstruction, named Movienet, which exploits space-time-coil correlations and motion preservation instead of k-space data consistency, to accelerate the acquisition of golden-angle radial data and enable subsecond reconstruction times in dynamic MRI., Methods: Movienet uses a U-net architecture with modified residual learning blocks that operate entirely in the image domain to remove aliasing artifacts and reconstruct an unaliased motion-resolved 4D image. Motion preservation is enforced by sorting the input image and reference for training in a linear motion order from expiration to inspiration. The input image was collected with a lower scan time than the reference XD-GRASP image used for training. Movienet is demonstrated for motion-resolved 4D MRI and motion-resistant 3D MRI of abdominal tumors on a therapeutic 1.5T MR-Linac (1.5-fold acquisition acceleration) and diagnostic 3T MRI scanners (2-fold and 2.25-fold acquisition acceleration for 4D and 3D, respectively). Image quality was evaluated quantitatively and qualitatively by expert clinical readers., Results: The reconstruction time of Movienet was 0.69 s (4 motion states) and 0.75 s (10 motion states), which is substantially lower than iterative XD-GRASP and unrolled reconstruction networks. Movienet enables faster acquisition than XD-GRASP with similar overall image quality and improved suppression of streaking artifacts., Conclusion: Movienet accelerates data acquisition with respect to compressed sensing and reconstructs 4D images in less than 1 s, which would enable an efficient implementation of 4D MRI in a clinical setting for fast motion-resistant 3D anatomical imaging or motion-resolved 4D imaging., (© 2023 International Society for Magnetic Resonance in Medicine.)
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- 2024
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8. Hospitalization With Clostridioides difficile in Pediatric Inflammatory Bowel Disease: a Population-Based Study.
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Kuenzig ME, Benchimol EI, Bernstein CN, Bitton A, Carroll MW, Griffiths AM, Kaplan GG, Nguyen GC, Otley AR, Stukel TA, Dummer TJB, El-Matary W, Jacobson K, Jones JL, Lix LM, Mack DR, Murthy SK, Peña-Sánchez JN, Targownik LE, Fung SG, Spruin S, Coward S, Cui Y, Filliter C, Nugent Z, Siddiq S, and Singh H
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- Adult, Canada epidemiology, Child, Chronic Disease, Clostridioides, Hospitalization, Humans, Risk Factors, Clostridioides difficile, Clostridium Infections epidemiology, Colitis, Ulcerative complications, Colitis, Ulcerative epidemiology, Crohn Disease complications, Crohn Disease epidemiology, Inflammatory Bowel Diseases complications, Inflammatory Bowel Diseases epidemiology
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Objectives: Several studies have demonstrated higher rates of Clostridioides difficile infection (CDI) in adults with inflammatory bowel disease (IBD). We conducted a population-based study comparing the risk of hospitalization with CDI in children with and without IBD., Methods: Using health administrative data and validated algorithms, we identified all children (<16 years) diagnosed with IBD in 5 Canadian provinces, then age and sex matched to 5 children without IBD. Province-specific 5-year incidence rates of hospitalization with CDI were pooled and generalized linear mixed-effects models were used to estimate the crude incidence rate ratio (IRR) comparing (1) children with and without IBD and (2) children with Crohn disease and ulcerative colitis. Hazard ratios (HR) from Cox proportional hazards models adjusting for age, sex, rural/urban household, and income were pooled using fixed-effects models., Results: The incidence rate of CDI identified during hospitalization was 49.06 [95% confidence interval (CI), 39.40-61.08] per 10,000 person-years (PY) in 3593 children with IBD compared to 0.39 (95% CI, 0.13-1.21) per 10,000 PY in 16,284 children without IBD (crude IRR, 133.4, 95% CI, 42.1-422.7; adjusted HR, 68.2, 95% CI, 24.4-190.4). CDI was identified less often in children with Crohn disease than ulcerative colitis (crude IRR, 0.51, 95% CI, 0.32-0.82; adjusted HR, 0.69, 95% CI, 0.46-1.05)., Conclusions: Children with IBD have a markedly higher incidence of CDI identified during a hospitalization relative to children without IBD. Consequently, symptomatic children with IBD who are hospitalized should be screened for CDI., Competing Interests: E.I.B. has acted as a legal consultant for Hoffman La-Roche Limited and Peabody & Arnold LLP for matters unrelated to a medication used to treat inflammatory bowel disease or C. difficile infection. He has also acted as a consultant for McKesson Canada. G.G.K. has received honoraria for speaking or consultancy from Abbvie, Janssen, Pfizer, Amgen, and Takeda. He has received research support from Ferring, Janssen, Abbvie, GlaxoSmith Kline, Merck, and Shire. He shares ownership of a patent: TREATMENT OF INFLAMMATORY DISORDERS, AUTOIMMUNE DISEASE, AND PBC. UTI Limited Partnership, assignee. Patent 62/ 555,397. A.R.O. has been on advisory boards of AbbVie Canada, Janssen Canada, and Nestle. He has received unrestricted educational grants from AbbVie Canada and Janssen Canada. His site is involved with clinical trials for AbbVie, Pfizer, Takeda, Eli Lily, and Celgene. A.M.G. has been a consultant for Abbvie, Amgen, BristolMyersSquibb, Janssen, Lilly, Pfizer, Roche; has received speaker fees from Abbvie, Janssen, Nestle, and investigator-initiated grant support from Abbvie. L.E.T. has received investigator initiated funding from Janssen Canada, and served on advisory boards for AbbVie Canada, Sandoz Canada, Takeda Canada, Merck Canada, Pfizer Canada, Janssen Canada, and Roche Canada. C.N.B. has been on the advisory boards of Abbvie Canada, Amgen Canada, Bristol Myers Squibb Canada, Janssen Canada, Pfizer Canada, Sandoz Canada, Takeda Canada, Roche Canada, and consulted to Takeda and Mylan Pharmaceuticals. He has been on the speaker’s bureau for Abbvie Canada, Janssen Canada, Takeda Canada and Medtronic Canada. He has received unrestricted educational grants from Abbvie Canada, Janssen Canada, Pfizer Canada, and Takeda Canada and has done contract research with Abbvie, Janssen, Pfizer, Celgene, Boeringher Ingelheim, and Roche. K.J. has been on Advisory boards of Abbvie Canada, Janssen Canada, Merck Canada, and Mylan Pharmaceuticals. He has been on the speaker’s bureau of Abbvie Canada and Janssen Canada. He has received investigator-initiated research support from Abbvie Canada and Janssen Canada. W.E.M. has received honoraria for speaking or consultancy from Abbvie and MERCK. H.S. has consulted to Amgen Canada, Bristol-Myers Squibb Canada, Sandoz Canada, Roche Canada, Takeda Canada, and Guardant Health. The remaining authors report no conflicts of interest., (Copyright © 2022 The Author(s). Published by Wolters Kluwer on behalf of European Society for Pediatric Gastroenterology, Hepatology, and Nutrition and North American Society for Pediatric Gastroenterology, Hepatology, and Nutrition.)
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- 2022
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9. Direct Health Care Costs, Health Services Utilization, and Outcomes of Biliary Atresia: A Population-based Cohort Study.
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Siddiq S, Jimenez-Rivera C, Kuenzig ME, Lima I, Geraghty MT, Ng VL, Tam K, and Benchimol EI
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- Aged, Child, Cohort Studies, Facilities and Services Utilization, Health Care Costs, Humans, Infant, Ontario epidemiology, Portoenterostomy, Hepatic, Treatment Outcome, Biliary Atresia surgery
- Abstract
Objectives: Biliary atresia (BA) is the most common reason for liver transplant in childhood, and outcomes worsen with older age at hepatoportoenterostomy (HPE). We determined direct health care costs in children with BA, compared to controls in a population-based cohort of children in Ontario, Canada., Methods: We used health administrative data to identify all children diagnosed with BA between 2002 and 2016 (n = 121) and matched controls (n = 602). We determined annual direct healthcare costs, and rates of health services utilization, liver transplantation, death, portal hypertension, cirrhosis, esophageal varices, and major upper gastrointestinal bleeding requiring hospitalization. Multivariable regression models determined the association between age at HPE, risk of liver transplant, and direct costs., Results: Incidence of BA was 6.07 (4.99-7.15) per 100,000 live births. The annual median (interquartile range) direct health care costs were higher in BA cases ($4210; interquartile range $1091-$16,765) compared to controls ($283; $112-$634). Compared to age at HPE <45 days, there was no significant association between direct costs and HPE ≥90 days (rate ratio 1.24, 95% confidence interval [CI] 0.78-1.97) or 45 to 90 days (rate ratio 1.05, 95% CI 0.73-1.50). Age at HPE ≥90 days was significantly associated with risk of undergoing liver transplant compared to age <45 days (hazard ratio 5.27, 95% CI 2.45-11.34). Direct costs were higher in patients with BA who underwent liver transplantation compared to those who did not ($39,476±$84,367 vs $22,579 ± $67,913)., Conclusions: Direct ealth care costs were high in patients with BA, especially in those who underwent liver transplantation. Age at HPE was associated with risk of liver transplantation, but not direct health care costs, utilization, or other risk outcomes.
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- 2020
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10. Effect of human head morphological variability on the mechanical response of blast overpressure loading.
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Teferra K, Tan XG, Iliopoulos A, Michopoulos J, and Qidwai S
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- Adolescent, Adult, Biomechanical Phenomena, Female, Finite Element Analysis, Head anatomy & histology, Head diagnostic imaging, Humans, Magnetic Resonance Imaging, Male, Models, Biological, Pressure, Young Adult, Head physiology
- Abstract
A methodology is introduced to investigate the effect of intersubject head morphological variability on the mechanical response of the brain when subjected to blast overpressure loading. Nonrigid image registration techniques are leveraged to warp a manually segmented template model to an arbitrary number of subjects following a procedure to coarsely segment the subjects in batch. Finite element meshes are autogenerated, and blast analysis is conducted. The template model is initially constructed to enable the full automated implementation and application of the proposed methodology. The application of the proposed approach for an anterior-oriented blast has been demonstrated, and the results reveal that the pressure response in the brain does exhibit some dependence on head morphological variability. While the magnitude of the peak pressure response can vary by more than 30%, its location within the brain is unaffected by head morphological variability. A linear least squares analysis was conducted to demonstrate that the peak magnitude of pressure is uncorrelated with head volume while it is correlated with aspect ratio relating to the amount of exposed surface area to the blast. These features of the pressure response are likely due to the peak pressure occurring during the early stages of stress wave transmission and reflection. As a result, the pressure response due to blast overpressure loading is predominantly loading dependent while morphological variability has a secondary effect., (Published 2018. This article is a U.S. Government work and is in the public domain in the USA.)
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- 2018
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11. Plants as Antileishmanial Agents: Current Scenario.
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Ullah N, Nadhman A, Siddiq S, Mehwish S, Islam A, Jafri L, and Hamayun M
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- Animals, Antiprotozoal Agents pharmacology, Biological Products pharmacology, Plant Extracts pharmacology, Biological Products therapeutic use, Leishmania drug effects, Leishmaniasis drug therapy, Plant Extracts therapeutic use
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Leishmaniasis is a clinical manifestation caused by the parasites of the genus Leishmania. Plants are reservoirs of bioactive compounds, which are known to be chemically balanced, effective and least injurious as compared with synthetic medicines. The current resistance and the toxic effects of the available drugs have brought the trend to assess the antileishmanial effect of various plant extracts and their purified compound/s, which are summarized in this review. Moreover, it also highlights various traditional remedies used by local healers against leishmaniasis. A systematic cross-sectional study for antileishmanial activity of natural products was carried out using multiple literature databases. The records retrieved since 2000 till year 2016 were analysed and summarized in the form of comprehensive tables and graphs. Natural products are potential source of new and selective agents that can significantly contribute to primary healthcare and probably are promising substitutes of chemicals for the treatment of protozoan diseases like leishmaniasis. Where the researchers prefer to use alcoholic solvents for the extraction of antileishmanial agents from plants, most of the studies are limited to in vitro conditions majorly on using promastigote forms of Leishmania. Thus, there is a need to carry out such activities in vivo and in host macrophages. Further, there is a need of mechanistic studies that can help taking few of the promising pure compounds to clinical level. Copyright © 2016 John Wiley & Sons, Ltd., (Copyright © 2016 John Wiley & Sons, Ltd.)
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- 2016
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12. Child and family experiences with inborn errors of metabolism: a qualitative interview study with representatives of patient groups.
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Khangura SD, Tingley K, Chakraborty P, Coyle D, Kronick JB, Laberge AM, Little J, Miller FA, Mitchell JJ, Prasad C, Siddiq S, Siriwardena K, Sparkes R, Speechley KN, Stockler S, Trakadis Y, Wilson BJ, Wilson K, and Potter BK
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- Canada, Child, Child, Preschool, Female, Humans, Male, Parents psychology, Patient-Centered Care, Qualitative Research, United Kingdom, United States, Family psychology, Metabolism, Inborn Errors psychology
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Background: Patient-centered health care for children with inborn errors of metabolism (IEM) and their families is important and requires an understanding of patient experiences, needs, and priorities. IEM-specific patient groups have emerged as important voices within these rare disease communities and are uniquely positioned to contribute to this understanding. We conducted qualitative interviews with IEM patient group representatives to increase understanding of patient and family experiences, needs, and priorities and inform patient-centered research and care., Methods: We developed a sampling frame of patient groups representing IEM disease communities from Canada, the United States, and United Kingdom. With consent, we interviewed participants to explore their views on experiences, needs, and outcomes that are most important to children with IEM and their families. We analyzed the data using a qualitative descriptive approach to identify key themes and sub-themes., Results: We interviewed 18 organizational representatives between February 28 and September 17, 2014, representing 16 IEMs and/or disease categories. Twelve participants voluntarily self-identified as parents and/or were themselves patients. Three key themes emerged from the coded data: managing the uncertainty associated with raising and caring for a child with a rare disease; challenges associated with the affected child's life transitions, and; the collective struggle for improved outcomes and interventions that rare disease communities navigate., Conclusion: Health care providers can support children with IEM and their families by acknowledging and reducing uncertainty, supporting families through children's life transitions, and contributing to rare disease communities' progress toward improved interventions, experiences, and outcomes.
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- 2016
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13. Bone marrow harvest versus peripheral stem cell collection for haemopoietic stem cell donation in healthy donors.
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Siddiq S, Pamphilon D, Brunskill S, Doree C, Hyde C, and Stanworth S
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- Anxiety etiology, Granulocyte Colony-Stimulating Factor administration & dosage, Hematopoietic Stem Cell Mobilization adverse effects, Hematopoietic Stem Cells, Humans, Randomized Controlled Trials as Topic, Tissue and Organ Harvesting methods, Tissue and Organ Harvesting mortality, Bone Marrow Cells, Pain, Postoperative etiology, Tissue Donors psychology, Tissue and Organ Harvesting adverse effects
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Background: Haemopoietic stem cells can be collected from a donor either as a bone marrow harvest or by peripheral blood collection. Both techniques have risks for the donor., Objectives: The aim of this review was to identify the adverse effects of haemopoietic stem cell donation and to compare the tolerability and safety of the two methods., Search Strategy: We searched bibliographic databases including the Cochrane Central Register of Controlled trials (CENTRAL) (The Cochrane Library 2008, issue 2), MEDLINE and EMBASE up to May 2008. We also searched reference lists of articles and contacted experts in the field., Selection Criteria: Randomised controlled trials enrolling haemopoietic stem cell donors and evaluating the different methods of donating haemopoietic stem cells were eligible., Data Collection and Analysis: Two authors independently screened studies for inclusion. We extracted data and evaluated methodological quality. Quantitative analysis was not possible for most outcomes, but where used we preferred random-effects models due to the variability between the included studies., Main Results: Six trials (807 donors) were eligible: all were substudies, or constituent parts of, larger randomised controlled trials of bone marrow and peripheral blood stem cell allogeneic transplantation. No included trial was designed solely to measure and assess the experience of stem cell donors. The donors in all studies were related to the stem cell recipient. Overall, both types of donors experienced pain subsequent to donation, and psychological morbidity. The trend was for bone marrow donors to experience more pain at the donation site, more overall adverse events, and more days of restricted activity. They were also more likely to require hospitalisation than peripheral blood stem cell donors. In contrast, peripheral blood stem cell donors experienced more pain prior to donation, which may be related to the pre-donation administration of granulocyte colony stimulating factor (G-CSF). The methodological quality of the studies was poor and indicated limitations due to the risk of selection and attrition bias. The proportion of donors from the parent trial not included in the donor substudies was also inadequately explained., Authors' Conclusions: The different short-term morbidities associated with each type of haemopoietic stem cell donation were clear, with bone marrow donors experiencing more pain and more restriction post-donation than peripheral blood donors. However, the studies were limited by their methodological quality, failure to provide long-term follow up (for which larger numbers of donors would be required) and a failure to apply consistent measures of quality of life in a way which allows more meaningful evaluation across studies.
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- 2009
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