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Here, we present the first study to investigate the seasonal importance of amino acid-nitrogen (N) to Arctic near shore microbial communities. We measured primary productivity and the uptake of ammonium, nitrate, urea, and amino acids in two size fractions (> 3 μm and approximately 0.7–3 μm), as well as ammonium regeneration and nitrification using 15N and 13C tracer approaches in the near-shore waters of the Chukchi Sea, during January, April, and August for two consecutive years. At discrete depths, nitrate comprised 46–78% of the total dissolved N pool during January and April but only 2–6% during August. Dissolved organic N (DON) concentrations increased between January and August though the carbon (C) : N (mol : mol) of the DON pool declined. Of the substrates tested, amino acids supported the bulk of both N and C nutrition in both size fractions during January and April (ice-covered). Urea generally had the lowest uptake rate under ice-covered conditions; uptake of urea-C was only detectable in August. Though previous Arctic studies focused largely on nitrate, we found nitrate uptake was generally lower than other substrates tested. The sharp decline in nitrate concentration between April and August, however, indicates a drawdown of nitrate during that period. Rates of ammonium uptake were highest in August, when it was the dominant N substrate used. During all sample periods, rates of ammonium regeneration were sufficient to supply ammonium demand. Rates of nitrification varied between sample periods, however, with much higher rates seen in January and April.

The Arctic is warming at a rate nearly twice the global average, leading to thawing permafrost, increased coastal erosion, and enhanced delivery of riverine terrestrially-derived dissolved organic matter (tDOM) to coastal waters. This humic-rich tDOM has the ability to attenuate light required for photosynthesis and stimulate heterotrophic growth by supplying a source of labile organic carbon. Due to tDOM's high carbon to nitrogen (C : N) ratio, additional nitrogen is required for microorganisms to utilize this excess carbon for growth, thus exacerbating competition between autotrophs and heterotrophs for limiting nutrients and potentially reducing primary production. The effect of Arctic tDOM additions on nitrate uptake by two microplankton size fractions in the coastal Chukchi Sea was quantified using 15N tracer methods. To assess the biogeochemical vs. spectral impacts of tDOM, the uptake incubations were amended with either tDOM or light attenuating films that mimic light absorption by the tDOM. Nitrate uptake and primary production rates in the larger, predominantly phytoplankton, size fraction generally decreased with increasing tDOM additions. The change in light attenuation alone accounted for a ∼ 50% reduction in nitrate uptake. Responses in the smaller size fraction varied seasonally with tDOM additions stimulating uptake in spring and suppressing it in summer. The largest variation in summer nitrate uptake can be explained by the shared effect of biogeochemistry and light attenuation. Therefore, large increases in tDOM delivery currently occurring and predicted to increase in the coastal Arctic, could reduce primary production, broadly impact nitrogen and carbon cycling, and affect higher trophic levels.

As part of the ANACONDAS program, we investigated the role of the Amazon plume in stimulating offshore nitrogen fixation and export production during the river's high-discharge period (May–June 2010). Using the shipboard underway system, we performed high-resolution sampling of over 450,000 km2 of surface waters, characterizing the distribution of nutrients, phytoplankton, particulate organic matter (POM), and stable carbon and nitrogen isotopes of POM in the offshore plume. We found distinct regional variations in diazotroph communities, with the Diatom-Diazotroph Associations (DDA) Hemiaulus hauckii – Richelia intracellularis dominating the low N : P mesohaline waters to the northwest of the plume axis and Trichodesmium spp. primarily occupying oceanic waters to the east. Nutrient availability broadly shaped diazotroph distributions along the salinity gradient, but habitat longevity may also play a role in the finer-scale distributions of communities, particularly of DDAs. H. hauckii and Trichodesmium spp. affected the nitrogen and carbon budgets in fundamentally different ways within the plume-influenced regions, with H. hauckii making much greater contributions to the particulate nitrogen pool and to CO2 drawdown than Trichodesmium spp., leading to much higher export fluxes. Our findings provide an important constraint on the role of the Amazon plume in creating distinct niches and roles for diazotrophs in the nutrient and carbon budgets of the western tropical North Atlantic.

18 pages, 6 figures, 1 table, supporting information https://doi.org/10.1002/ecs2.2641, During austral spring and summer, the coastal Antarctic experiences a sharp increase in primary production and a steepening of biotic and abiotic gradients that result from increased solar radiation and retreating sea ice. In one of the largest seasonally ice-free regions, the Amundsen Sea Polynya, pelagic samples were collected from 15 sites during a massive Phaeocystis antarctica bloom in 2010/2011. Along with a suite of other biotic and abiotic measurements, bacterioplankton were collected and analyzed for community structure by pyrosequencing of the 16S rRNA gene. The aims were to identify patterns in diversity and composition of heterotrophic bacterioplankton and to test mechanistic hypotheses for explaining these differences along variations in depth, water mass, phytoplankton biomass, and organic and inorganic nutrients. The overall goal was to clarify the relationship between primary producers and bacterioplankton community structure in the Southern Ocean. Results suggested that both epipelagic and mesopelagic bacterioplankton communities were structured by phytoplankton blooming in the euphotic zone. As chlorophyll a (chl-a) increased in surface waters, the abundance of surface bacterioplankton increased, but their diversity decreased. Similarity in bacterioplankton community composition between surface-water sites increased as the bloom progressed, suggesting that algal blooms may homogenize surface-water bacterioplankton communities at larger spatial scales. Below the euphotic zone, the opposite relationship was found. Mesopelagic bacterioplankton diversity increased with increasing chl-a in the overlying surface waters. This shift may be promoted by several factors including local increase in organic and inorganic nutrients from particles sinking out of the euphotic zone, an increase in niche differentiation associated with the particle flux, interactions with deep-dwelling macrozooplankton, and release from competition with primary producers. Additional multivariate analyses of bacterioplankton community structure and nutrient concentrations revealed distinct depth horizons, with bacterioplankton communities having maximum alpha and beta diversity just below the euphotic zone, while nutrient composition gradually homogenized with increasing depth. Our results provide evidence for bloom-driven (bottom-up) control of bacterioplankton community diversity in the coastal Southern Ocean and suggest mechanisms whereby surface processes can shape the diversity of bacterioplankton communities at great depth, The study was funded by the Swedish Research Council (grants to SB and LR) and the U.S. National Science Foundation through the ASPIRE project (ANT‐0839069)

During a springtime study of pelagic microbial activities in the coastal Alaskan Arctic (Chukchi Sea, June 1998), a selective serial dilution technique was used to estimate the relative abundance of cold-loving (psychrophilic) and cold-tolerant (psychrotolerant or psychrotrophic) pelagic bacteria at four stations representing different stages of an algal bloom. Psychrophiles were numerically dominant, regardless of the organic nutrient concentration of their source waters (51–101 µmol L−1 total organic carbon; 2-17 µmol L−1 total organic nitrogen). At all stations, lower temperature incubations generated significantly higher most probable number (MPN) estimates. Further, these psychrophiles were unable to acclimate to 20°C over the course of a 3-month incubation. Our pelagic experiments are the first of their kind reported from the Western Arctic, where surface waters are dominated by the Pacific Ocean inflow, and suggest that psychrophiles can dominate even in waters only recently subjected to perennially cold conditions, independent of nutrient status or bloom condition.

New evidence suggests that cold-loving (psychrophilic) bacteria may be a dynamic component of the episodic bloom events of high-latitude ecosystems. Here we report the results of an unusually early springtime study of pelagic microbial activity in the coastal Alaskan Arctic. Heterotrophic bacterioplankton clearly responded to an algal bloom by doubling cell size, increasing the fraction of actively respiring cells (up to an unprecedented 84% metabolically active using redox dye CTC), shifting substrate-uptake capabilities from kinetic parameters better adapted to lower substrate concentrations to those more suited for higher concentrations, and more than doubling cell abundance. Community composition (determined by polymerase chain reaction/DGGE and nucleotide sequence analysis) also shifted over the bloom. Results support, for the first time with modern molecular methods, previous culture-based observations of bacterial community succession during Arctic algal blooms and confirm that previously observed variability in pelagic microbial activity can be linked to changes in community structure. During early bloom stages, virioplankton and bacterial abundance were comparable, suggesting that mortality due to phage infection was low at that time. The virus-to-bacteria ratio (VBR) increased 10-fold at the height of the bloom, however, suggesting an increased potential for bacterioplankton mortality resulting from viral infection. The peak in VBR coincided with observed shifts in both microbial activity and community structure. These early-season data suggest that substrate and virioplankton interactions may control the active microbial carbon cycling of this region.

To test the hypothesized inhibition of high-latitude marine bacteria living at lower temperatures when organic matter is scarce, the effects of temperature and organic substrate concentration on pelagic microbial heterotrophy were investigated in the perennially cold surface waters of a summertime arctic polynya. Utilization (incorporation plus respiration) of radiolabeled amino acids was measured as a function of increasing added substrate concentration at in situ (subzero) temperature and under short-term warming. Results analyzed using analysis of variance (ANOVA) showed that increased substrate concentration had a significant effect on utilization rates at all stations, suggesting that communities were always living well below saturating levels of substrate. About half of the communities sampled revealed a significant temperature response using ANOVA; interactions between temperature and substrate concentration were detected only rarely. Kinetic parameters, used to link microbial activity and substrate utilization with temperature sensitivity, exhibited mixed responses to short-term warming. Maximum specific utilization rates showed the greater temperature sensitivity, with Q 10 values ranging from 0.25 to 13. Specific affinities responded to temperature significantly at only about half of the stations in the polynya. Psychrophilic behaviors (e.g., highest specific affinities and oligotrophic capacities at lower incubation temperatures) were observed at stations most likely to be influenced by direct Arctic Ocean outflow. Complete agreement with the hypothesis of enhanced substrate requirement by bacteria living at subzero temperature was not found. An improved understanding of the diversity of cold-tolerant and cold-loving microorganisms is needed before generalizing or predicting the role of temperature in the cycling of organic matter at high latitudes.