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The bathypelagic ocean is one of the largest ecosystems on Earth and sustains half of the ocean's microbial activity. This microbial activity strongly relies on surface-derived particles, but there is growing evidence that the carbon released through solubilization of these particles may not be sufficient to meet the energy demands of deep ocean prokaryotes. To explore how bathypelagic prokaryotes respond to the absence of external inputs of carbon, we followed the long-term (1 year) dynamics of an enclosed community. Despite the lack of external energy supply, we observed a continuous succession of active prokaryotic phylotypes, which was driven by recruitment of taxa from the seed bank (i.e., initially rare operational taxonomic units [OTUs]). A single OTU belonging to Marine Group I of Thaumarchaeota, which was originally rare, dominated the microbial community for similar to 4 months and played a fundamental role in this succession likely by introducing new organic carbon through chemolithoautotrophy. This carbon presumably produced a priming effect, because after the decline of Thaumarchaeota, the diversity and metabolic potential of the community increased back to the levels present at the start of the experiment. Our study demonstrates the profound versatility of deep microbial communities when facing organic carbon deprivation.

13 pages, 4 figures, 4 tables, Despite representing only a small fraction of the ocean's dissolved organic matter pool, dissolved free amino acids (DFAA) have high turnover rates and are major nitrogen and carbon sources for bacterioplankton. Both phytoplankton and bacterioplankton assimilate and release DFAA, but their consumption and production are difficult to quantify in nature due to their short residence times (min) as dissolved monomers. We segregated DFAA production by phytoplankton and bacterial consumption by measuring individual DFAA concentrations in four axenic phytoplankton cultures during the exponential growth phase, and also after 4 d incubations in the presence of a natural bacterioplankton community. The amounts and composition of the DFAA pool varied widely among phytoplankton species. The proportion of dissolved organic carbon attributed to DFAA varied among cultures. The picoeukaryotic prasinophyte, Micromonas pusilla, released higher amounts of DFAA than the other species tested (diatoms and dinoflagellate), especially alanine, which has been reported as the dominant individual DFAA in some oligotrophic environments. Community structure of heterotrophic prokaryotes responded to differences in the quality of organic matter released among microalgal species, with Roseobacter-related bacteria responding strongly to exudate composition. Our results demonstrate the specificity of DFAA extracellular release among several algal species and their preferential uptake by members of bacterial communities, This work was supported by projects STORM (CTM2009-09352/MAR) and ICARO (PIE 200830I120) and DOREMI (CTM2012-34294) funded by Spanish Ministerio de Economia y Competitividad. H.S. benefited from fellowships from the Spanish ‘Ministerio de Educación y Ciencia’ (JCI-2008-2727) and Brazilian ‘Ciências sem Fronteiras’ Program from CAPES (BJT 013/2012); C.R.-C. was funded by a I3P-CSIC predoctoral fellowship within the project MODIVUS, CTM2005-04795/MAR; J.P. was funded by the Crafoord Foundation and the Swedish governmental strong research program Ecochange; G.T.T. was partially supported by a sabbatical fellowship from the Spanish ‘Ministerio de Educación y Ciencia’

Consistent with the effects of HIV on cell-mediated immunity, an increased susceptibility to intracellular microorganisms has been observed. Rickettsiae are obligate intracellular microorganisms. The aim of this study was to examine Rickettsia typhi and Rickettsia felis infections in HIV+ population. Sera of 341 HIV+ patients were evaluated by indirect immunofluorescent assay. Age, sex, residential locality, risk behavior, stage according to criteria of the Center for Disease Control and Prevention, CD4+/CD8+ T cells, Hepatitis B antigen, and Hepatitis C serology were surveyed. Seroprevalences of R. typhi and R. felis infection were 7.6% and 4.4%, respectively. No associations were found between seropositivities and the assessed variables. Findings were similar to those obtained in healthy subjects from the same region.

Bacillary angiomatosis is a disorder of neovascular proliferation involving skin and lymph nodes of immunosuppressed patients. Bartonella henselae or Bartonella quintana have been inculpated as causative by direct culture or PCR amplification of DNA sequences. Here, we report the clinical evolution of a patient infected with human immunodeficiency virus (HIV) whose B. quintana infection was diagnosed by PCR.

International audience; The effects of organic and inorganic nutrient enrichments on algal-bacterial competition were investigated using mesocosms. Interactions were followed over 10 d in 12, 3-m(3) seawater mesocosms in the Isefjord, Denmark. Two sets of four mesocosms were given the same daily addition of ``phytoplankton nutrients'' (phosphate and nitrate) but received different amounts of glucose, and one set was kept in excess with respect to silicate. Four additional mesocosms served as controls and received either no additions, silicate alone, or glucose alone. In the mesocosm set where no silicate was added, enrichment with phytoplankton nutrients and glucose led to a replacement of diatoms, not by other algae, but by heterotrophic bacteria, mainly bacteria > 2 mum. In the mesocosm set where silicate was kept replete, diatoms competed successfully with bacteria for the uptake of mineral nutrients. Even in mesocosms enriched with high amounts of glucose, primary production increased throughout the experimental period, while bacterial production, after an initial increase, leveled off. In addition, turnover time of glucose increased in the silicate-replete mesocosm set, consistent with the idea that bacterial consumption was hampered by diatoms competing successfully for phosphate and nitrate. The size and shape of different algal and bacterial groups in relation to nutrient uptake and grazer avoidance are discussed. Both accumulation and consumption of dissolved organic carbon could depend on the. structure of the microbial food web.

Many experimental studies on detritus decomposition revealed a comparable microbial succession after the addition of a substrate pulse: from small, freely suspended single bacteria at the beginning, to more complex and larger growth forms during a later stage, accompanied by the appearance of bacterivorous protists. We examined in three model experiments with different organic carbon sources whether this shift in bacterial size structure is linked to the grazing impact of bacterivores. In short-term (8–10 d) microcosm experiments we added natural dissolved and particulate detritus (macrophyte leaves and leachate, dead phytoplankton cells) as an organic substrate source. By the use of size-fractionated inocula and eucaryotic inhibitors we obtained treatments without protists, in which bacteria developed without predation. These were compared, by measurements of bacterial activity and microscopical analysis of bacterial size structure, to incubations in which either cultured heterotrophic nanoflagellates or a natural protist assemblage was included in the inoculum. The presence of bacterial grazers resulted in a 50–90% reduction of bacterial biomass compared to grazer-free trials. The selective removal of freely suspended bacteria produced a very different relative composition of bacterial biomass: it became dominated by large, grazing-resistant forms such as filaments and cells attached to particles or clustered in small aggregates. In grazer-free treatments, bacterial biomass was always dominated (>80%) by free-living, single bacterial cells. The time course of the bacterial development suggested different underlying mechanisms for the appearance of predation resistant filamentous and of aggregated or attached bacteria. As bacterial aggregates developed in approximately similar amounts with and without grazers no specific growth stimulation by protists could be detected. In contrast, concentrations of filamentous bacteria were 2–10 times higher in treatments with protists, thus indicating a stimulation of this growth form during enhanced grazing pressure. Measurements of ectoenzymatic activity and H-leucine uptake indicated that microbial activity was also shifted to larger size fractions. In most cases more than 50% of bacterial activity in treatments with protists was associated with the size fraction>10 μm whereas this value was

The major basic nuclear protein HCc (previously named Histone-like) of the dinoflagellate Crypthecodinium cohnii B was immunolocalized in light and electron microscopy using an affinity-purified polyclonal antibody. Complementary conventional and cryo-techniques were used to study the distribution of the DNA-binding protein in interphase cells and to follow its behaviour throughout the mitotic cycle. In non-dividing cells, the HCc protein was found to be located on extra-chromosomal loops and chromosomal nucleofilaments dispersed in the nucleoplasm. In mitotic cells, from prophase to early telophase, it was homogeneously distributed in the (whole) dividing chromosomes. HCc protein was also detected in two compartments of all the permanently observable nucleoli: the nucleolar organizing region and the fibrillo-granular region. In this paper we discuss the hypothetical roles, structural and/or functional, of this DNA-binding protein, which is specific to dinoflagellates, the only eukaryotes whose chromatin is devoid of histones and nucleosomes.