7 results on '"Jonathan N. Pruneda"'
Search Results
2. Ester‐linked ubiquitination by HOIL‐1 controls immune signalling by shaping the linear ubiquitin landscape
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Jonathan N. Pruneda and Rune Busk Damgaard
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biology ,Ubiquitin ,Chemistry ,Ubiquitin-Protein Ligases ,medicine.medical_treatment ,Ubiquitination ,Esters ,Cell Biology ,Biochemistry ,Ubiquitin ligase ,Cell biology ,Serine ,Immune system ,Cytokine ,LUBAC complex ,biology.protein ,medicine ,Threonine ,Receptor ,Molecular Biology ,Signal Transduction - Abstract
Ester-linked ubiquitination of serine or threonine residues - or even lipids - has emerged as a new regulatory earmark in cell signalling. Petrova et al. (2021) now reveal that ubiquitin esterification by the atypical ubiquitin ligase HOIL-1, a component of the LUBAC complex, is critical for proper formation of linear ubiquitin chains and control of immune signalling in T cells and macrophages. Surprisingly, ester-linked ubiquitination can either promote or inhibit linear ubiquitin conjugation and cytokine production depending on the receptor and immune cell engaged. Comment on: https://doi.org/10.1111/febs.15896.
- Published
- 2021
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3. Deciphering atypical ubiquitin signals using pathogen‐derived E3 ubiquitin ligases
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Tyler G. Franklin and Jonathan N. Pruneda
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Ubiquitin ,biology ,Genetics ,biology.protein ,Molecular Biology ,Biochemistry ,Pathogen ,Biotechnology ,Cell biology - Published
- 2021
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4. Tuning BRCA1 and BARD1 activity to investigate RING ubiquitin ligase mechanisms
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Rachel E. Klevit, Paul A. DaRosa, Ernesto Coronado, Jonathan N. Pruneda, Emily D Duncan, Peter S. Brzovic, and Mikaela D. Stewart
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0301 basic medicine ,chemistry.chemical_classification ,030102 biochemistry & molecular biology ,biology ,Ring (chemistry) ,Biochemistry ,In vitro ,Ubiquitin ligase ,Cell biology ,03 medical and health sciences ,030104 developmental biology ,Enzyme ,Ubiquitin ,chemistry ,BARD1 ,biology.protein ,Ring domain ,Molecular Biology ,Function (biology) - Abstract
The tumor-suppressor protein BRCA1 works with BARD1 to catalyze the transfer of ubiquitin onto protein substrates. The N-terminal regions of BRCA1 and BARD1 that contain their RING domains are responsible for dimerization and ubiquitin ligase activity. This activity is a common feature among hundreds of human RING domain-containing proteins. RING domains bind and activate E2 ubiquitin-conjugating enzymes to promote ubiquitin transfer to substrates. We show that the identity of residues at specific positions in the RING domain can tune activity levels up or down. We report substitutions that create a structurally intact BRCA1/BARD1 heterodimer that is inactive in vitro with all E2 enzymes. Other substitutions in BRCA1 or BARD1 RING domains result in hyperactivity, revealing that both proteins have evolved attenuated activity. Loss of attenuation results in decreased product specificity, providing a rationale for why nature has tuned BRCA1 activity. The ability to tune BRCA1 provides powerful tools for understanding its biological functions and provides a basis to assess mechanisms for rescuing the activity of cancer-associated variations. Beyond the applicability to BRCA1, we show the identity of residues at tuning positions that can be used to predict and modulate the activity of an unrelated RING E3 ligase. These findings provide valuable insights into understanding the mechanism and function of RING E3 ligases like BRCA1.
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- 2017
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5. Development of Diubiquitin-Based FRET Probes To Quantify Ubiquitin Linkage Specificity of Deubiquitinating Enzymes
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Gabriëlle B. A. van Tilburg, Huib Ovaa, Paul R. Elliott, Duco van Dalen, Paul P. Geurink, Jonathan N. Pruneda, Tycho E. T. Mevissen, David Komander, Bianca D. M. van Tol, and Paul J. G. Brundel
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solid-phase synthesis ,ubiquitin conjugates ,Linkage (mechanical) ,010402 general chemistry ,Cleavage (embryo) ,01 natural sciences ,Biochemistry ,Deubiquitinating enzyme ,law.invention ,Solid-phase synthesis ,Ubiquitin ,law ,native chemical ligation ,Fluorescence Resonance Energy Transfer ,Molecular Biology ,Chromatography, High Pressure Liquid ,Fluorescent Dyes ,biology ,deubiquitinating enzymes ,010405 organic chemistry ,Chemistry ,Communication ,Organic Chemistry ,Ubiquitination ,Native chemical ligation ,Communications ,0104 chemical sciences ,3. Good health ,Kinetics ,Förster resonance energy transfer ,FRET ,biology.protein ,Molecular Medicine ,Function (biology) - Abstract
Deubiquitinating enzymes (DUBs) are proteases that fulfill crucial roles in the ubiquitin (Ub) system, by deconjugation of Ub from its targets and disassembly of polyUb chains. The specificity of a DUB towards one of the polyUb chain linkages largely determines the ultimate signaling function. We present a novel set of diubiquitin FRET probes, comprising all seven isopeptide linkages, for the absolute quantification of chain cleavage specificity of DUBs by means of Michaelis–Menten kinetics. Each probe is equipped with a FRET pair consisting of Rhodamine110 and tetramethylrhodamine to allow the fully synthetic preparation of the probes by SPPS and NCL. Our synthetic strategy includes the introduction of N,N′‐Boc‐protected 5‐carboxyrhodamine as a convenient building block in peptide chemistry. We demonstrate the value of our probes by quantifying the linkage specificities of a panel of nine DUBs in a high‐throughput manner.
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- 2016
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6. Semi-field evaluation of a granulovirus andBacillus thuringiensisssp.kurstakifor season-long control of the potato tuber moth,Phthorimaea operculella
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Silvia I. Rondon, Steven P. Arthurs, Lawrence A. Lacey, and Jonathan N. Pruneda
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education.field_of_study ,biology ,fungi ,Population ,Biological pest control ,food and beverages ,biology.organism_classification ,Gelechiidae ,Phthorimaea operculella ,Lepidoptera genitalia ,Biopesticide ,Horticulture ,Insect Science ,Bacillus thuringiensis ,Botany ,PEST analysis ,education ,Ecology, Evolution, Behavior and Systematics - Abstract
There are few insecticidal options for potato tuber moth (PTM), Phthorimaea operculella Zeller (Lepidoptera: Gelechiidae), control late in the growing season. We evaluated the PTM granulovirus (PoGV) and Bacillus thuringiensis Berliner ssp. kurstaki (Btk) for season-long control of PTM on potato foliage in 2006 and 2007. Compared to untreated controls, 10 weekly applications of PoGV (10 13 occlusion bodies/ha) reduced PTM populations in replicated 1-m 3 field cages by 86‐96% on pre-harvest foliage and 90‐97% on tubers added to cages shortly before harvest. Infection rates of 82‐95% of L4 larvae by PoGV were noted within individual larval cohorts. Equivalently timed Btk treatments (1.12 kg product/ha) were significantly less effective at population suppression, with a 36‐76% reduction in larvae recovered from tubers added to cages. A PoGV/Btk alternation was significantly more effective than Btk alone and as effective as PoGV in 2007, but not in 2006. There was some evidence that reduced rate PoGV treatments (10% rate or 50% application frequency) were less effective than the standard program. There were no treatment effects on percentage of tubers growing in the ground that were infested at harvest, which remained comparatively low at ≤ 8.1%. Bioassays were conducted to evaluate the residual activities of foliar deposits. Early-season applications were highly effective for the first 24 h ( ≥ 93% mortality) with a steady decline in activity over 10 days. A second application, applied later in the season, showed similar patterns, although in this case Btk was less persistent than PoGV, whereas both agents provided significant larval mortality compared with controls over 14 days. Both PoGV and Btk provide alternatives to manage field infestations of PTM prior to harvest, thus reducing the risk of tuber infestations in storage.
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- 2008
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7. E2~Ub conjugates regulate the kinase activity ofShigellaeffector OspG during pathogenesis
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Danielle L. Swaney, Angela Daurie, Jonathan N. Pruneda, Judit Villén, F. Donelson Smith, Rachel E. Klevit, Peter S. Brzovic, John R. Rohde, Ronald E. Stenkamp, Isolde Le Trong, Andrew W. Stadnyk, and John D. Scott
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Models, Molecular ,Enzyme complex ,Protein Conformation ,Virulence Factors ,Biology ,Ubiquitin-conjugating enzyme ,Crystallography, X-Ray ,General Biochemistry, Genetics and Molecular Biology ,Cell Line ,Shigella flexneri ,Mice ,Ubiquitin ,Animals ,Humans ,Kinase activity ,Molecular Biology ,General Immunology and Microbiology ,Effector ,Kinase ,General Neuroscience ,biology.organism_classification ,Cell biology ,Have You Seen? ,Protein kinase domain ,Biochemistry ,Ubiquitin-Conjugating Enzymes ,biology.protein ,Protein Multimerization ,Protein Kinases - Abstract
Pathogenic bacteria introduce effector proteins directly into the cytosol of eukaryotic cells to promote invasion and colonization. OspG, a Shigella spp. effector kinase, plays a role in this process by helping to suppress the host inflammatory response. OspG has been reported to bind host E2 ubiquitin-conjugating enzymes activated with ubiquitin (E2~Ub), a key enzyme complex in ubiquitin transfer pathways. A co-crystal structure of the OspG/UbcH5c~Ub complex reveals that complex formation has important ramifications for the activity of both OspG and the UbcH5c~Ub conjugate. OspG is a minimal kinase domain containing only essential elements required for catalysis. UbcH5c~Ub binding stabilizes an active conformation of the kinase, greatly enhancing OspG kinase activity. In contrast, interaction with OspG stabilizes an extended, less reactive form of UbcH5c~Ub. Recognizing conserved E2 features, OspG can interact with at least ten distinct human E2s~Ub. Mouse oral infection studies indicate that E2~Ub conjugates act as novel regulators of OspG effector kinase function in eukaryotic host cells.
- Published
- 2014
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