1. Replication analysis of 15 susceptibility loci for nonsyndromic cleft lip with or without cleft palate in an italian population
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Elisabeth Mangold, Johanna Klamt, Hannah Schünke, Luca Scapoli, Kerstin U. Ludwig, Francesco Carinci, Marcella Martinelli, Michael Knapp, Francesca Cura, Markus M. Nöthen, and Anne C. Böhmer
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0301 basic medicine ,Genetics ,Embryology ,business.industry ,Single-nucleotide polymorphism ,Locus (genetics) ,General Medicine ,Italian population ,Confidence interval ,03 medical and health sciences ,030104 developmental biology ,Pediatrics, Perinatology and Child Health ,Etiology ,Susceptibility locus ,SNP ,Medicine ,business ,Developmental Biology ,Genetic association - Abstract
BACKGROUND Nonsyndromic cleft lip with or without cleft palate (nsCL/P) is one of the most common congenital malformations in humans. Its average global incidence is 1.7 per 1000 live births, with wide variation according to geographical location and ethnicity. Its etiology involves both genetic and environmental factors. The aim of the present study was to confirm genetic association of a selection of 15 candidate nsCL/P loci using an independent sample of the Italian population. METHODS At least one single-nucleotide polymorphism (SNP) for each locus was genotyped in 380 nuclear trios. RESULTS Transmission disequilibrium analysis revealed significant associations for three variants at two loci (8q24 and 1p22). Two SNPs at 8q24 showed the strongest level of association, the rs987525 (PTDT = 6.81 × 10(-6) ; homozygous relative risk = 3.60 [95% confidence interval, 2.12-6.13]), and the rs17241253 (PTDT = 1.03 × 10(-5) ; homozygous relative risk = 3.75 [95% confidence interval, 2.10-6.67]). Four additional loci (at 1q32, 3q12, 8q21, and 10q25) achieved nominally significant p-values. Two SNPs at 1p36 achieved p-values of
- Published
- 2015
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