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6. Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers

Author

SanCristobal, M., primary, Chevalet, C., additional, Peleman, J., additional, Heuven, H., additional, Brugmans, B., additional, van Schriek, M., additional, Joosten, R., additional, Rattink, A. P., additional, Harlizius, B., additional, Groenen, M. A. M., additional, Amigues, Y., additional, Boscher, M.-Y., additional, Russell, G., additional, Law, A., additional, Davoli, R., additional, Russo, V., additional, Desautes, C., additional, Alderson, L., additional, Fimland, E., additional, Bagga, M., additional, Delgado, J. V., additional, Vega-Pla, J. L., additional, Martinez, A. M., additional, Ramos, M., additional, Glodek, P., additional, Meyer, J. N., additional, Gandini, G., additional, Matassino, D., additional, Siggens, K., additional, Laval, G., additional, Archibald, A., additional, Milan, D., additional, Hammond, K., additional, Cardellino, R., additional, Haley, C., additional, and Plastow, G., additional

Published
2006
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7. Genetic diversity within and between European pig breeds using microsatellite markers

Author

SanCristobal, M., primary, Chevalet, C., additional, Haley, C. S., additional, Joosten, R., additional, Rattink, A. P., additional, Harlizius, B., additional, Groenen, M. A. M., additional, Amigues, Y., additional, Boscher, M.-Y., additional, Russell, G., additional, Law, A., additional, Davoli, R., additional, Russo, V., additional, Desautes, C., additional, Alderson, L., additional, Fimland, E., additional, Bagga, M., additional, Delgado, J. V., additional, Vega-Pla, J. L., additional, Martinez, A. M., additional, Ramos, M., additional, Glodek, P., additional, Meyer, J. N., additional, Gandini, G. C., additional, Matassino, D., additional, Plastow, G. S., additional, Siggens, K. W., additional, Laval, G., additional, Archibald, A. L., additional, Milan, D., additional, Hammond, K., additional, and Cardellino, R., additional

Published
2006
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13. Genetic diversity in European pigs utilizing amplified fragment length polymorphism markers

Author

Guillaume Laval, P. Glodek, R. Cardellino, Alan Archibald, A.P. Rattink, Graham Plastow, Martien A. M. Groenen, Vincenzo Russo, M. Bagga, Henri C M Heuven, Amparo Martínez Martínez, J. Peleman, B. Brugmans, Juan Vicente Delgado, Chris Haley, R. Joosten, K. Hammond, L. Alderson, Maria Ramos, E. Fimland, Barbara Harlizius, J. N. Meyer, K. Siggens, Andy Law, Donato Matassino, Roberta Davoli, George C. Russell, Claude Chevalet, Gustavo Gandini, Y. Amigues, Magali SanCristobal, C. Désautés, David J. Milan, Jose Luis Vega-Pla, M.-Y. Boscher, M. G. M. van Schriek, ProdInra, Migration, San Cristobal M., Chevalet C., Peleman J., Heuven H., Brugmans B., Van Schriek M., Joosten R., Rattink A.P., Harlizius B., Groenen M.A.M., Amigues Y., Boscher M.-Y, Russel G., Law A., Davoli R., Russo V., Desautes C., Alderson L., Fimland E., Bagga M., Delgado J.V., Vega-Pla J., Martinez A.M., Ramos M., Glodeck P., Meyer J.N., Gandini G., Matassino D., Siggens K., Laval G., Archibald A., Milan D., Hammond K., Cardellino R., Haley C., Plastow G., Laboratoire de Génétique Cellulaire (LGC), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Vétérinaire de Toulouse (ENVT), Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Institut National Polytechnique (Toulouse) (Toulouse INP), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Laboratoire d'Analyse Génétique pour les Espèces Animales (LABOGENA), and Institut National de la Recherche Agronomique (INRA)

Subjects
pig, Genetic Markers, 0106 biological sciences, Heterozygote, Genotype, Swine, [SDV]Life Sciences [q-bio], AMPLIFIED FRAGMENT LENGTH POLYMORPHISM MARKERS, Breeding, Biology, 010603 evolutionary biology, 01 natural sciences, Loss of heterozygosity, 03 medical and health sciences, Genetics, Animals, Allele, Alleles, Phylogeny, 030304 developmental biology, 0303 health sciences, Genetic diversity, genetic distance, Polymorphism, Genetic, conservation, food and beverages, genetic diversity, General Medicine, [SDV] Life Sciences [q-bio], Europe, Genetic distance, Genetic marker, Microsatellite, Animal Science and Zoology, Amplified fragment length polymorphism, aflp marker, Microsatellite Repeats
Abstract

The use of DNA markers to evaluate genetic diversity is an important component of the management of animal genetic resources. The Food and Agriculture Organisation of the United Nations (FAO) has published a list of recommended microsatellite markers for such studies; however, other markers are potential alternatives. This paper describes results obtained with a set of amplified fragment length polymorphism (AFLP) markers as part of a genetic diversity study of European pig breeds that also utilized microsatellite markers. Data from 148 AFLP markers genotyped across samples from 58 European and one Chinese breed were analysed. The results were compared with previous analyses of data from 50 microsatellite markers genotyped on the same animals. The AFLP markers had an average within-breed heterozygosity of 0.124 but there was wide variation, with individual markers being monomorphic in 3-98% of the populations. The biallelic and dominant nature of AFLP markers creates a challenge for their use in genetic diversity studies as each individual marker contains limited information and AFLPs only provide indirect estimates of the allelic frequencies that are needed to estimate genetic distances. Nonetheless, AFLP marker-based characterization of genetic distances was consistent with expectations based on breed and regional distributions and produced a similar pattern to that obtained with microsatellites. Thus, data from AFLP markers can be combined with microsatellite data for measuring genetic diversity.

Published
2006
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