13 results on '"Doty S"'
Search Results
2. Diazotrophic Endophytes of Poplar and Willow for Growth Promotion of Rice Plants in Nitrogen‐Limited Conditions
- Author
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Kandel, S. L., primary, Herschberger, N., additional, Kim, S.H., additional, and Doty, S. L., additional
- Published
- 2015
- Full Text
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3. Molecular profiling of oral microbiota in jawbone samples of bisphosphonate-related osteonecrosis of the jaw
- Author
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Wei, X, primary, Pushalkar, S, additional, Estilo, C, additional, Wong, C, additional, Farooki, A, additional, Fornier, M, additional, Bohle, G, additional, Huryn, J, additional, Li, Y, additional, Doty, S, additional, and Saxena, D, additional
- Published
- 2012
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- View/download PDF
4. Characterization of skin abnormalities in a mouse model of osteogenesis imperfecta using high resolution magnetic resonance imaging and Fourier transform infrared imaging spectroscopy
- Author
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Canuto, H. C., primary, Fishbein, K. W., additional, Huang, A., additional, Doty, S. B., additional, Herbert, R. A., additional, Peckham, J., additional, Pleshko, N., additional, and Spencer, R. G., additional
- Published
- 2011
- Full Text
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5. Spectroscopic Characterization of Collagen Cross-Links in Bone
- Author
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Paschalis, E. P., primary, Verdelis, K., additional, Doty, S. B., additional, Boskey, A. L., additional, Mendelsohn, R., additional, and Yamauchi, M., additional
- Published
- 2001
- Full Text
- View/download PDF
6. Physicochemical study of plasma-sprayed hydroxyapatite-coated implants in humans
- Author
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MacDonald, D. E., primary, Betts, F., additional, Stranick, M., additional, Doty, S., additional, and Boskey, A. L., additional
- Published
- 2000
- Full Text
- View/download PDF
7. Neutrophil Extracellular Traps in Tissue and Periphery in Juvenile Dermatomyositis.
- Author
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Duvvuri B, Pachman LM, Morgan G, Khojah AM, Klein-Gitelman M, Curran ML, Doty S, and Lood C
- Subjects
- Child, Humans, Dermatomyositis immunology, Extracellular Traps, Neutrophils physiology, Neutrophils ultrastructure
- Abstract
Objective: Neutrophils are key immune cells participating in host defense through several mechanisms, including the formation of neutrophil extracellular traps (NETs). This study was undertaken to investigate the role of neutrophils in juvenile dermatomyositis (JDM)., Methods: Electron microscopy was used to identify neutrophils in tissue. NETs were also imaged using fluorescence microscopy and quantified using a myeloperoxidase-DNA enzyme-linked immunosorbent assay (ELISA) in plasma obtained from healthy children (n = 20), disease controls (n = 29), JDM patients (n = 66), and JDM patients with history of calcifications (n = 20). Clinical data included disease activity scores and complement C4 levels. Levels of immune complexes (ICs) and calprotectin were analyzed using ELISA., Results: Using electron microscopy, neutrophils were found to infiltrate affected muscle tissue, engulfing deposited calcium crystals. Uptake of the crystals led to neutrophil activation (P < 0.01) and subsequent phosphatidylinositol 3-kinase- and NADPH oxidase-dependent but peptidylarginine deiminase 4-independent formation of NETs, which contained mitochondrial DNA (P < 0.05), as confirmed in vivo (P < 0.001) and in vitro (P < 0.01). Peripheral NET levels were associated with calcinosis (P = 0.01), ICs (P = 0.008), and interleukin-8 levels (P = 0.004). Children with JDM had impaired NET clearance (P = 0.01), associated with autoantibody profiles including melanoma differentiation-associated protein 5 (P = 0.005), and depressed complement C4 levels (r = -0.72, P = 0.002). Furthermore, children with JDM showed evidence of neutrophil activation, with elevated levels of peroxidase activity (P = 0.02) and calprotectin (P < 0.01), which were associated with disease activity (P = 0.007), and dyslipidemia (odds ratio 4.7, P < 0.05)., Conclusion: We found novel mechanisms of both calcium crystal-mediated neutrophil activation and cell death in JDM pathophysiology. Targeting this pathway may reduce the frequency and extent of calcinosis, as well as prevent long-term development of comorbidities, including atherosclerosis., (© 2019, American College of Rheumatology.)
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- 2020
- Full Text
- View/download PDF
8. Characterization of skin abnormalities in a mouse model of osteogenesis imperfecta using high resolution magnetic resonance imaging and Fourier transform infrared imaging spectroscopy.
- Author
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Canuto HC, Fishbein KW, Huang A, Doty SB, Herbert RA, Peckham J, Pleshko N, and Spencer RG
- Subjects
- Animals, Biophysical Phenomena, Collagen metabolism, Disease Models, Animal, Mice, Mice, Inbred C57BL, Skin pathology, Staining and Labeling, Magnetic Resonance Imaging methods, Osteogenesis Imperfecta complications, Osteogenesis Imperfecta pathology, Skin Abnormalities complications, Skin Abnormalities pathology, Spectroscopy, Fourier Transform Infrared methods
- Abstract
Evaluation of the skin phenotype in osteogenesis imperfecta (OI) typically involves biochemical measurements, such as histologic or biochemical assessment of the collagen produced from biopsy-derived dermal fibroblasts. As an alternative, the current study utilized non-invasive magnetic resonance imaging (MRI) microscopy and optical spectroscopy to define biophysical characteristics of skin in an animal model of OI. MRI of skin harvested from control, homozygous oim/oim and heterozygous oim/+ mice demonstrated several differences in anatomic and biophysical properties. Fourier transform infrared imaging spectroscopy (FT-IRIS) was used to interpret observed MRI signal characteristics in terms of chemical composition. Differences between wild-type and OI mouse skin included the appearance of a collagen-depleted lower dermal layer containing prominent hair follicles in the oim/oim mice, accounting for 55% of skin thickness in these. The MRI magnetization transfer rate was lower by 50% in this layer as compared to the upper dermis, consistent with lower collagen content. The MRI transverse relaxation time, T2, was greater by 30% in the dermis of the oim/oim mice compared to controls, consistent with a more highly hydrated collagen network. Similarly, an FT-IRIS-defined measure of collagen integrity was 30% lower in the oim/oim mice. We conclude that characterization of phenotypic differences between the skin of OI and wild-type mice by MRI and FT-IRIS is feasible, and that these techniques provide powerful complementary approaches for the analysis of the skin phenotype in animal models of disease., (Copyright © 2011 John Wiley & Sons, Ltd.)
- Published
- 2012
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9. Mapping proteoglycan-bound water in cartilage: Improved specificity of matrix assessment using multiexponential transverse relaxation analysis.
- Author
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Reiter DA, Roque RA, Lin PC, Irrechukwu O, Doty S, Longo DL, Pleshko N, and Spencer RG
- Subjects
- Animals, Cattle, In Vitro Techniques, Patella, Spectroscopy, Fourier Transform Infrared, Cartilage, Articular metabolism, Magnetic Resonance Spectroscopy methods, Nasal Cartilages metabolism, Proteoglycans analysis
- Abstract
Association of MR parameters with cartilage matrix components remains an area of ongoing investigation. Multiexponential analysis of nonlocalized transverse relaxation data has previously been used to quantify water compartments associated with matrix macromolecules in cartilage. We extend this to mapping the proteoglycan (PG)-bound water fraction in cartilage, using mature and young bovine nasal cartilage model systems, toward the goal of matrix component-specific imaging. PG-bound water fraction from mature and young bovine nasal cartilage was 0.31 ± 0.04 and 0.22 ± 0.06, respectively, in agreement with biochemically derived PG content and PG-to-water weight ratios. Fourier transform infrared imaging spectroscopic-derived PG maps normalized by water content (IR-PG(ww) ) showed spatial correspondence with PG-bound water fraction maps. Extensive simulation analysis demonstrated that the accuracy and precision of our determination of PG-bound water fraction was within 2%, which is well-within the observed tissue differences. Our results demonstrate the feasibility of performing imaging-based multiexponential analysis of transverse relaxation data to map PG in cartilage., (Copyright © 2010 Wiley-Liss, Inc.)
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- 2011
- Full Text
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10. Expression of functional mammalian P450 2E1 in hairy root cultures.
- Author
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Banerjee S, Shang TQ, Wilson AM, Moore AL, Strand SE, Gordon MP, and Lafferty Doty S
- Subjects
- Animals, Atropa belladonna genetics, Atropa belladonna metabolism, Cytochrome P-450 CYP2E1 genetics, Environmental Pollutants metabolism, Gene Transfer Techniques, Organ Culture Techniques methods, Plant Roots enzymology, Plant Roots metabolism, Rabbits, Transgenes, Trichloroethylene metabolism, Atropa belladonna cytology, Cytochrome P-450 CYP2E1 biosynthesis, Gene Expression, Plant Roots genetics, Transformation, Genetic
- Abstract
P450 2E1 is an important mammalian liver enzyme known to metabolize a wide range of compounds including several common environmental pollutants. The medicinal plant, Atropa belladonna, was transformed with Agrobacterium rhizogenes containing a binary vector with rabbit P450 2E1 in either the sense or antisense orientation. The resulting "hairy roots" were isolated and grown in liquid medium. Production of P450 2E1 protein was verified in the roots containing the 2E1 gene in the sense orientation. Transgenic and control root cultures were dosed with the environmental pollutant, trichloroethylene (TCE), and were analyzed for the TCE metabolites, chloral and trichloroethanol. The root cultures expressing the mammalian P450 2E1 had increased levels of the metabolites compared to the levels in the control roots. This method represents a quick way to screen transformants for expression of foreign genes before regeneration of whole plants, and also as a possible source of foreign protein for purification., (Copyright 2002 John Wiley & Sons, Inc. Biotechnol Bioeng 77: 462-466, 2002; DOI 10.1002/bit.10151)
- Published
- 2002
- Full Text
- View/download PDF
11. Physicochemical study of plasma-sprayed hydroxyapatite-coated implants in humans.
- Author
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MacDonald DE, Betts F, Stranick M, Doty S, and Boskey AL
- Subjects
- Absorptiometry, Photon, Calcium analysis, Calcium Phosphates, Humans, Microscopy, Electron, Scanning, Phosphates analysis, Prosthesis Design, Prosthesis Failure, Spectroscopy, Fourier Transform Infrared, Surface Properties, Titanium, Coated Materials, Biocompatible, Dental Implants, Durapatite
- Abstract
This study represents the first report of the physical and chemical changes occurring in coatings of failed hydroxyapatite (HA)-coated titanium implants obtained from a comprehensive, multicenter human dental implant study. A total of 53 retrieved samples were obtained and compared with unimplanted controls with the same manufacturer and similar manufacture dates. Forty-five retrieved implants were examined for surface characteristics and bulk composition. Implants were staged based on implantation history: stage 1 (implants retrieved between surgical placement and surgical uncovering), stage 2 (implants retrieved at surgical uncovering and evaluation), stage 3 (implants retrieved between surgical uncovering evaluation and occlusal loading), and stage 4 (implants retrieved after occlusal loading). Scanning electron microscopy showed progressive coating thinning with implantation time. At later stages, bare Ti metal was detected by energy-dispersive X-ray analysis and electron spectroscopy for chemical analysis. Increases in Ti and Al (2-7.5 atm % each) were detected at the apical ends of all stage 4 samples. In unimplanted coatings, X-ray diffraction analysis demonstrated the presence of amorphous calcium phosphate, beta-tricalcium phosphate, tetracalcium phosphate, and calcium oxide in addition to large hydroxyapatite crystals (c axis size, D002 = 429 +/- 13 A; a axis size, D300 = 402 +/- 11 A, a/c aspect ratio 0.92). The nonapatitic phases disappeared with increased implantation time, although there was a persistence of amorphous calcium phosphate. Bulk coating chemical analysis showed that Ca/P ratios for implant controls (1.81 +/- 0.01) were greater than stoichiometric HA (1.67) and decreased for implant stages 3 and 4 (1.69 +/- 0.09 and 1.67 +/- 0.09, respectively), explained by the dissolution of the non apatitic phases. Crystal sizes also changed with implantation times, being smaller than the control at all but stage 4. Fourier transform infrared analyses agreed with these results, and also indicated the accumulation of bone (protein and carbonate-apatite) in the retrieved coatings. The accumulation of bone was not stage dependent. These findings indicate that there was some biointegration with the surrounding bone, but the greatest changes occurred with the HA coating materials, their loss, and chemical change.
- Published
- 2001
- Full Text
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12. Immunolocalization and expression of bone morphogenetic proteins 2 and 4 in fracture healing.
- Author
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Bostrom MP, Lane JM, Berberian WS, Missri AA, Tomin E, Weiland A, Doty SB, Glaser D, and Rosen VM
- Subjects
- Animals, Bone Morphogenetic Proteins, Cartilage physiopathology, Femoral Fractures pathology, Femoral Fractures physiopathology, Growth Substances metabolism, Immunohistochemistry, Osteogenesis, Rats, Rats, Inbred Lew, Fracture Healing physiology, Proteins metabolism
- Abstract
Recently, it has become increasingly evident that fracture healing involves a complex interaction of many local and systemic regulatory factors. The roles of some of these growth factors have been described; however, little is understood about the presence of the bone morphogenetic proteins in fracture repair, despite the fact that they are the most potent osteoinductive proteins known. This study defines and characterizes the physiologic presence, localization, and chronology of the bone morphogenetic proteins in fracture healing with an established rat fracture healing model. With use of a recently developed monoclonal antibody against bone morphogenetic proteins 2 and 4 developed with standard avidin-biotin complex/immunoperoxidase protocols, frozen undecalcified fracture calluses were analyzed semiquantitatively for the percentage of various types of fracture cells staining positively. During the early stages of fracture healing, only a minimum number of primitive cells stained positively in the fracture callus. As the process of endochondral ossification proceeded, the presence of bone morphogenetic proteins 2 and 4 increased dramatically, especially in the primitive mesenchymal and chondrocytic cells. While the cartilaginous component of the callus matured with a concomitant decrease in the number of primitive cells, there was a concomitant decrease in both the intensity and the number of positively staining cells. As osteoblasts started to lay down woven bone on the chondroid matrix, these osteoblastic cells exhibited strong positive staining. The intensity of this staining decreased, however, as lamellar bone replaced the primitive woven bone. A similar observation was noted for the areas of the callus undergoing intramembranous ossification. Initially, within several days after the fracture, periosteal cells and osteoblasts exhibited intense staining for bone morphogenetic proteins 2 and 4. As the woven bone was replaced with mature lamellar bone, this staining decreased. These data, and the awareness of the strong osteoinductive capacities of bone morphogenetic protein, suggest that bone morphogenetic proteins 2 and 4 are important regulators of cell differentiation during fracture repair.
- Published
- 1995
- Full Text
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13. Diminished material properties and altered bone structure in rat femora during pregnancy.
- Author
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Leopold SS, Boskey AL, Doty SB, Gertner JM, Peterson MG, and Torzilli PA
- Subjects
- Animals, Bone Density, Diaphyses anatomy & histology, Female, Microscopy, Electron, Scanning, Pregnancy, Rats, Rats, Sprague-Dawley, Time Factors, Weight-Bearing physiology, Femur anatomy & histology, Femur physiology, Pregnancy, Animal physiology
- Abstract
Pregnancy and lactation are known to cause structural and mechanical changes in bone, but the effects of pregnancy alone have not been evaluated thoroughly. This study used radiographic measurements, torsion testing, mineral analyses, and histological evaluation to determine whether there are changes in bone material and geometric properties during pregnancy in the growing rat, as implied by earlier biochemical and histological studies. The bones of pregnant 9 to 12-week-old rats and controls that were not pregnant and were matched by age (but not weight) were evaluated at times corresponding to 5, 10, 15, and 20 days of the 23-day gestation period to address the following questions: (a) How is the growth of whole bone affected by pregnancy in the growing rat (as determined by radiographic analyses)? (b) How are the mechanical properties (structural and material) of whole bone affected by pregnancy (as assessed by torsion testing)? (c) Are there changes in the characteristics of bone mineral during pregnancy (as determined by measurement of mineral content and x-ray diffraction analyses)? and (d) Are there detectable morphological or ultrastructural differences between the bones of pregnant and control rats (as assessed by analyses based on histology and back-scattered electron imaging)? The presence of statistically significant differences in this study was determined initially on the basis of a two-factor analysis of variance. In general, significant differences were noted only at late gestation (day 20), when the bones were longer and had a greater outer radius and cortical thickness; this indicates that more growth occurred during pregnancy.(ABSTRACT TRUNCATED AT 250 WORDS)
- Published
- 1995
- Full Text
- View/download PDF
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