1. A chromosome-level genome assembly enables the identification of the follicule stimulating hormone receptor as the master sex-determining gene in the flatfish Solea senegalensis
- Author
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Roberto de la Herrán, Miguel Hermida, Juan Andres Rubiolo, Jèssica Gómez‐Garrido, Fernando Cruz, Francisca Robles, Rafael Navajas‐Pérez, Andres Blanco, Paula Rodriguez Villamayor, Dorinda Torres, Pablo Sánchez‐Quinteiro, Daniel Ramirez, Maria Esther Rodríguez, Alberto Arias‐Pérez, Ismael Cross, Neil Duncan, Teresa Martínez‐Peña, Ana Riaza, Adrian Millán, M. Cristina De Rosa, Davide Pirolli, Marta Gut, Carmen Bouza, Diego Robledo, Laureana Rebordinos, Tyler Alioto, Carmelo Ruíz‐Rejón, Paulino Martínez, Universidade de Santiago de Compostela. Departamento de Anatomía e Produción Animal, Universidade de Santiago de Compostela. Departamento de Zooloxía, Xenética e Antropoloxía Física, Producció Animal, and Aqüicultura
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whole genome sequencing ,follicule stimulating hormone receptor ,sex determination ,Sex determination ,Genetic map ,Follicule stimulating hormone receptor ,Whole genome sequencing ,Genetics ,genetic map ,Senegalese sole ,Ecology, Evolution, Behavior and Systematics ,Biotechnology - Abstract
Data de publicació electrònica: 01-01-2023 Includes supplementary materials for the online appendix. Sex determination (SD) shows huge variation among fish and a high evolutionary rate, as illustrated by the Pleuronectiformes (flatfishes). This order is characterized by its adaptation to demersal life, compact genomes and diversity of SD mechanisms. Here, we assembled the Solea senegalensis genome, a flatfish of great commercial value, into 82 contigs (614 Mb) combining long- and short-read sequencing, which were next scaffolded using a highly dense genetic map (28,838 markers, 21 linkage groups), representing 98.9% of the assembly. Further, we established the correspondence between the assembly and the 21 chromosomes by using BAC-FISH. Whole genome resequencing of six males and six females enabled the identification of 41 single nucleotide polymorphism variants in the follicle stimulating hormone receptor (fshr) consistent with an XX/XY SD system. The observed sex association was validated in a broader independent sample, providing a novel molecular sexing tool. The fshr gene displayed differential expression between male and female gonads from 86 days post-fertilization, when the gonad is still an undifferentiated primordium, concomitant with the activation of amh and cyp19a1a, testis and ovary marker genes, respectively, in males and females. The Y-linked fshr allele, which included 24 nonsynonymous variants and showed a highly divergent 3D protein structure, was overexpressed in males compared to the X-linked allele at all stages of gonadal differentiation. We hypothesize a mechanism hampering the action of the follicle stimulating hormone driving the undifferentiated gonad toward testis. This study was supported by the Spanish Ministry of Economy and Competitiveness, FEDER Grants (RTI2018-096847-B-C21, RTI2018-096847-B-C22 and RTI2018-097110-B-C21), Junta de Andalucía-FEDER Grant (P20-00938) and the European Union's Horizon 2020 research and innovation programme under grant agreement No. 817923 (AQUA-FAANG). We thank Geneaqua SL for their participation and financial support of sequencing. We acknowledge the bioinformatic support of the Centro de Supercomputación de Galicia (CESGA).
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- 2023