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Phytophthora spp. encode large sets of effector proteins and distinct populations of small RNAs (sRNAs). Recent evidence has suggested that pathogen-derived sRNAs can modulate the expression of plant defense genes. Here, we studied the sRNA classes and functions associated with Phytophthora infestans Argonaute (Ago) proteins. sRNAs were co-immunoprecipitated with three PiAgo proteins and deep sequenced. Twenty- to twenty-two-nucleotide (nt) sRNAs were identified as the main interaction partners of PiAgo1 and high enrichment of 24-26-nt sRNAs was seen in the PiAgo4-bound sample. The frequencies and sizes of transposable element (TE)-derived sRNAs in the different PiAgo libraries suggested diversified roles of the PiAgo proteins in the control of different TE classes. We further provide evidence for the involvement of PiAgo1 in the P. infestans microRNA (miRNA) pathway. Protein-coding genes are probably regulated by the shared action of PiAgo1 and PiAgo5, as demonstrated by analysis of differential expression. An abundance of sRNAs from genes encoding host cell death-inducing Crinkler (CRN) effectors was bound to PiAgo1, implicating this protein in the regulation of the expanded CRN gene family. The data suggest that PiAgo1 plays an essential role in gene regulation and that at least two RNA silencing pathways regulate TEs in the plant-pathogenic oomycete P. infestans.

Gene silencing may have a direct or indirect impact on many biological processes in eukaryotic cells, and is a useful tool for the determination of the roles of specific genes. In this article, we report silencing in Phytophthora infestans, an oomycete pathogen of potato and tomato. Gene silencing is known to occur in P. infestans, but its genetic basis has yet to be determined. Genes encoding the major components of the RNA interference (RNAi) pathway, Dicer-like (Pidcl1), Argonaute (Piago1-5) and RNA-directed RNA polymerase (Pirdr1), were identified in the P. infestans genome by comparative genomics, together with families of other genes potentially involved in gene silencing, such as histone deacetylases, histone methyltransferases, DEAD helicases, chromodomain proteins and a class 1 RNaseIII. Real-time reverse transcription-polymerase chain reaction demonstrated transcript accumulation for all candidate genes throughout the asexual lifecycle and plant infection, but at different levels of mRNA abundance. A functional assay was developed in which silencing of the sporulation-associated Picdc14 gene was released by the treatment of protoplasts with in vitro-synthesized double-stranded RNAs homologous to Pidcl1, Piago1/2 and histone deacetylase Pihda1. These results suggest that the components of gene silencing, namely Dicer-like, Argonaute and histone deacetylase, are functional in P. infestans. Our data demonstrate that this oomycete possesses canonical gene silencing pathways similar to those of other eukaryotes.

A collection of Mycosphaerella fijiensis, in total 71 isolates from 11 countries, of which 54 isolates were derived from the Ugandan Lake Victoria region, were analysed with regard to molecular markers and benomyl resistance to characterize the population structure. Forty-seven alleles from seven restriction fragment length polymorphism (PCR-RFLP) and five microsatellite markers were scored and utilized in the study. Using analysis of molecular variance (AMOVA), no significant genetic differentiation could be found between isolates from different leaves compared to isolates from a single leaf (P = 0.07). Exact tests of the allelic frequencies revealed no differences between isolates from different districts or between single-leaf-derived isolates compared to isolates derived from different leaves (P > 0.05 in all cases except two, which, however, were shown to be of type-I error). Resistance to benomyl, analysed both by PCR and fungicide screening, revealed that all isolates were susceptible. Compiled information from the various datasets implied that the Ugandan M. fijiensis population in the Lake Victoria Basin constitutes a homogenous population, probably as the result of a recent founder event.

Spot blotch, caused by Bipolaris sorokiniana, has become an increasingly important disease on barley in Sweden. In order to enhance our knowledge of this disease, eight Swedish B. sorokiniana isolates were assessed for their virulence pathotype on 30 barley genotypes including eight lines of mutant origin, designated B. sorokiniana tolerant (bst). A leaf screen assay revealed the presence of virulence groups 1 and 7 in Sweden. Several mutant genotypes demonstrated enhanced resistance responses (P = 0.0001), of which bstl:3 had the lowest leaf scoring value to the most virulent isolate, Swe2 (virulence group 7). To evaluate the host root responses, two contrasting isolates Swe2 and Swe4 (virulence group 7 and 1) were used to inoculate a set of eight differential lines, including four promising mutant lines from the leaf screen. Mutant bstl:6 was significantly less susceptible (P = 0.001) compared with the other barley genotypes tested, independent of the two isolates used. Mutants bst1, bst1:3 and bstl:4, which displayed less or no spots, are also considered promising genotypes for further breeding attempts.

Here, we describe the rapid cloning of a plant gene, Leptosphaeria maculans 3 (RLM3(Col)), which encodes a putative Toll interleukin-1 receptor-nucleotide binding (TIR-NB) class protein, which is involved in defence against the fungal pathogen L. maculans and against three other necrotrophic fungi. We have, through microarray-based case control bulk segregant comparisons of transcriptomes in pools of Col-0 x An-1 progeny, identified the absence of a locus that causes susceptibility in An-1. The significance of this locus on chromosome 4 for L. maculans resistance was supported by PCR-based mapping, and denoted resistance to RLM3(Col). Differential susceptible phenotypes in four independent T-DNA insertion lines support the hypothesis that At4g16990 is required for RLM3(Col) function. The mutants in RLM3(Col) also exhibited an enhanced susceptibility to Botrytis cinerea, Alternaria brassicicola and Alternaria brassicae. Complementations of An-1 and T-DNA mutants using overexpression of a short transcript lacking the NB-ARC domain, or a genomic clone, restored resistance to all necrotrophic fungi. The elevated expression of RLM3(Col) on B. cinerea-susceptible mutants further suggested convergence in signalling and gene regulation between defence against B. cinerea and L. maculans. In the case of L. maculans, RLM3(Col) is required for efficient callose deposition downstream of RLM1(Col).

Verticillium wilt of oilseed rape (Brassica napus) is caused primarily by Verticillium longisporum and has become a serious problem in northern Europe. In order to evaluate whether V. longisporum and V. dahliae differ in their interaction with oilseed rape, phenotypical and molecular assessments were made. Oilseed rape plants for fungal assessments were inoculated with V. longisporum and V. dahliae via root-dipping and samples were taken from roots, stems, leaves, flowers, pods and seeds during plant development. The infection by V. longisporum was found to start mainly in lateral roots and root-hairs, followed by colonization of the xylem vessels and extensive spread in stems and leaves, whereas V. dahliae infected the main roots and remained in the region below the cotyledon node of the plants. Re-isolation studies, together with PCR analysis of samples taken from early growth stages through to fully ripe plants, showed that the onset of flowering was a critical phase for V. longisporum to colonize plants. No seeds infected with V. longisporum were found. Mycelial growth from V. dahliae but not V. longisporum was significantly reduced on media containing tissue from a low glucosinolate B. napus genotype compared with growth on media containing tissue from a high glucosinolate cultivar. The results of this study suggest that V. longisporum favours B. napus as host and that the transition from the vegetative to the generative phase is of importance for the spread of the fungus in oilseed rape plants.

Two hundred and ninety-nine accessions representing 11 cultivar groups of Brassica oleracea and eight additional accessions of the wild species B. cretica, B. incana, B. insularis and B. villosa were screened for resistance to Verticillium wilt. A disease index (DI) was calculated for each accession, and a correction of the DI was carried out to compensate for a fluctuating infection level between 11 independent trials. A total of 235, or 77% of the accessions tested, had a DIcorr less or equal to the oilseed rape cv. ‘Express’ (DIcorr= 2.81), the reference cultivar. Only one accession of the wild species, B. incana, showed an enhanced level of resistance (DIcorr= 2.01). Twenty-four accessions, distributed over eight cultivar groups of B. oleracea were selected for subsequent crosses involving B. rapa. Hybrid plants with 14 accessions were resultant and seed was obtained from crosses where the cultivar groups acephala, alboglabra, botrytis, capitata, gemmifera, italica and sabellica were used as female parents. When progeny of the produced resynthesized rapeseed lines were evaluated for Verticillium wilt resistance, three lines showed a significantly lower disease index (P ≥ 0.01) compared with the cv. ‘Express’. This source of resistance is now being crossed to advanced breeding material of oilseed rape.

Leptosphaeria maculans isolates have been assigned to one of two groups, A or B, on the basis of differences in their characteristics. Group A can further be divided into pathogenicity groups (PG) 2, 3 and 4 and group B into PG1. To determine if isolates belonging to the aggressive canker forming group A are present in Sweden, physiological and genetic characterisation of 120 isolates collected in the year 2000 were performed. Thirty-seven isolates were classified as belonging to pathogenicity group PG3 and 63 isolates as PG4, based on a cotyledon assay. Twenty isolates did not cause any symptoms at all, and were classified as PG1. When comparing two geographical regions, Skane and Ostergotland, equal numbers of PG3 and PG4 isolates were found. By analysing the isolates by PCR, the collection was further classified into 100 group A isolates and 20 group B isolates. A corresponding classification of the isolates was observed when the ability to produce pigments in Czapek Dox broth was examined. The results showed a clear predominance of group A. This was also the case for the isolate collection from 2001. In a detailed survey of disease development in a L. maculans infected winter oilseed rape field in southern Sweden (Skane), basal stem canker was not observed until early June Although the disease index value increased from 8.4 in June to 18.0 in July, few severely damaged plants were observed before harvest in mid-July, despite infection with group A isolates.

Eight isolates of Verticillium longisporum and seven of Verticillium dahliae were examined for their pathogenicity to Arabidopsis thaliana. Two-week-old seedlings of two A. thaliana ecotypes were inoculated with conidial suspensions (1.6 × 10 4 conidia/ml) and maintained in sterile conditions on microtitre plates for 25 days. The seedlings were assessed daily for flowering time, height at flowering and mortality. From this data the proportion of plants flowering was calculated and the susceptibility of each ecotype to individual isolate was quantified. The A. thaliana ecotypes were inoculated by several isolates of V. dahliae and V. longisporum with the disease symptoms observed being similar to those characteristic of Verticillium-infected Brassica napus. Responses to Verticillium isolates varied and for both ecotypes significant differences (P < 0.05) were recorded in days to flowering between the V. longisporum isolates VD6 and VD12 and the V. dahliae isolate INRA617 and all other isolates. There were no other significant effects correlated with isolate origin or Verticillium species.

The role of the glucosinolate-myrosinase system in resistance to Leptosphaeria maculans was studied by monitoring changes in glucosinolate profiles in leaf tissue surrounding the site of inoculation. Susceptible Brassica napus cv. Hanna, resistant B. nigra and near isogenic lines derived from interspecific hybrids between the two species were compared. Expression of myrosinase binding protein and presence of genetic markers were also assayed. No correlation between degree of resistance and amount of sinigrin or other aliphatic glucosinolates was found. However, in time course experiments the glucosinolate profile of the L. maculans inoculated plants differed significantly from the water-inoculated control plants in the amount of 4-methoxy-glucobrassicin observed. Five to eight days post-inoculation an increased level of 4-methoxy glucobrassicin, ranging from 30% to 47% on average, was found in the inoculated plants, whilst controls varied between 7.6% and 9.2%. This increase was seen both in susceptible and resistant material. Other changes observed could mainly be assigned as effects of wounding. Although inoculation with L. maculans elicited changes in the leaf indolyl glucosinolate profiles, in the material studied, these changes could not be correlated to resistance against the fungus.

The inheritance of resistance to Leptosphaeria maculans was studied in near-isogenic lines derived from asymmetric somatic hybrids between Brassica napus+Brassica nigra and Brassica napus+Brassica juncea, respectively. The hybrids had been backcrossed to B. napus for seven generations before the genetic segregation of the blackleg resistance was determined. The results of the inheritance studies suggested that one single dominant allele controls the resistance in the Brassica napojuncea line, whereas two independent dominant loci were found in the Brassica naponigra line. Total leaf DNA from the near-isogenic lines was isolated and 89 loci were detected by hybridization to 66 restriction fragment length polymorphism (RFLP) markers previously mapped in the B. nigra genome. Out of the 89 loci, eight loci were detected in the B. naponigra line and six were found in the B. napojuncea line. RFLP markers co-segregating with blackleg resistance in adult leaves were also found. Two markers associated with linkage group 5 and 8, respectively, of the B genome were found in the B. naponigra line and one marker was associated with linkage group 2 in the B. napojuncea line.

The ability to discriminate between self- and nonself-molecules is characteristic of all living organisms. This feature forms the basis for the activation of innate immune responses upon microbial attack. If microbes bypass the external physical barrier, plants have evolved two classes of immune receptors to detect nonself-molecules to prevent further pathogen progress. One class consists of membrane-resident pattern-recognition receptors that sense molecules from microbes, the so-called microbe-associated molecular patterns (MAMPs). The second class consists of plant resistance (R) proteins that have capacity to detect directly or indirectly isolate-specific pathogen effectors encoded by avirulence genes. These receptors are mainly intracellular. An alternative route is effector molecules that act as transcription factors. Signal transduction cascades link recognition and defence responses through second messengers, transcription factors and crosstalk between plant hormones to fine-tune the overall response. Keywords: effectors; hormones; MAMPs; signalling; transcription factors

Out of 400 reciprocal crosses made between Brassica napus and Arabidopsis thaliana, 200 maternal B. napus flowers produced 31 seeds and 10 seeds developed when A. thaliana was used as the female parent. Of the latter, three seeds successfully germinated but did not develop into mature plants. In contrast, plants from all 31 seeds generated from B. napus were established. DNA from these 31 plants was analysed by 18 probes mapped to the A. thaliana genome, two selectable marker genes and one A. thaliana species-specific repetitive probe. It was found that one plant had identical restriction fragments to A. thaliana with two of the 21 probes used. The gene flow within Brassicaceae is discussed in light of this result.