33 results on '"Carl A Anderson"'
Search Results
2. Rapid at‐line early cell death quantification using capacitance spectroscopy
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Suyang Wu, Stephanie A. Ketcham, Claudia C. Corredor, Douglas Both, James K. Drennen, and Carl A. Anderson
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Bioreactors ,Cricetulus ,Cell Death ,Cricetinae ,Spectrum Analysis ,Cell Culture Techniques ,Animals ,Bioengineering ,CHO Cells ,Electric Capacitance ,Applied Microbiology and Biotechnology ,Biotechnology - Abstract
Cell death is one of the failure modes of mammalian cell culture. Apoptosis is a regulated cell death process mainly observed in cell culture. Timely detection of apoptosis onset allows opportunities for preventive controls that ensure high productivity and consistent product quality. Capacitance spectroscopy captures the apoptosis-related cellular properties changes and thus quantifies the percentage of dying cells. This study demonstrated a quantification model that measures the percentage of apoptotic cells using a capacitance spectrometer in an at-line setup. When predicting the independent test set collected from bench-scale bioreactors, the root-mean-squared error of prediction was 8.8% (equivalent to 9.9% of the prediction range). The predicted culture evolution trajectory aligned with measured values from the flow cytometer. Furthermore, this method alarms cell death onset earlier than the traditional viability test, that is, the trypan blue exclusion test. Compared to flow cytometry (the traditional early cell death detection method), this method is rapid, simple, and less labor-intensive. In addition, this at-line setup can be easily transferred between scales (e.g., lab-scale for development to manufacturing scale), which benefits process transfers between facilities, scale-up, and other process transitions.
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- 2022
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3. Author response for 'Metabolic Trends of Chinese Hamster Ovary Cells in Biopharmaceutical Production under Batch and Fed‐Batch Conditions'
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Carl A. Anderson, Adam J. Rish, and James K. Drennen
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Biopharmaceutical ,Biochemistry ,Chinese hamster ovary cell ,Biology - Published
- 2021
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4. Author response for 'Rapid Serum-Free/Suspension Adaptation: Medium Development using a Definitive Screening Design for Chinese Hamster Ovary Cells'
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Yuxiang Zhao, Alec Skomo, Carl A. Anderson, Adam J. Rish, James K. Drennen, and Suyang Wu
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Serum free ,Chemistry ,Chinese hamster ovary cell ,Screening design ,Suspension (vehicle) ,Medium development ,Cell biology - Published
- 2021
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5. Factors Associated With Outcomes of Patients With Primary Sclerosing Cholangitis and Development and Validation of a Risk Scoring System
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Mette Vesterhus, Simon M. Rushbrook, Richard Sandford, Kate D. Lynch, Douglas Thorburn, George F. Mells, William Gelson, Edit Castren, Gideon M. Hirschfield, Palak J. Trivedi, Roger W. Chapman, Sun-Gou Ji, M. Aldersley, Mark Hudson, Michael A. Heneghan, Andrew Bathgate, Graeme J.M. Alexander, Brijesh Srivastava, Martine Walmsley, Carl A. Anderson, Tom H. Karlsen, Allan Clark, Elizabeth C. Goode, Kelly Spiess, Goode, Elizabeth C [0000-0002-8425-1530], Ji, Sun-Gou [0000-0001-8652-6318], and Apollo - University of Cambridge Repository
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Male ,medicine.medical_specialty ,medicine.medical_treatment ,Cholangitis, Sclerosing ,Liver transplantation ,Risk Assessment ,Primary sclerosing cholangitis ,Biliary disease ,03 medical and health sciences ,0302 clinical medicine ,Cholestasis ,HLA Antigens ,Internal medicine ,medicine ,Humans ,030304 developmental biology ,0303 health sciences ,Framingham Risk Score ,Hepatology ,business.industry ,Hazard ratio ,Original Articles ,Middle Aged ,medicine.disease ,Alkaline Phosphatase ,United Kingdom ,3. Good health ,Liver Transplantation ,Autoimmune, Cholestatic and Biliary Disease ,Cohort ,Original Article ,030211 gastroenterology & hepatology ,Female ,Risk assessment ,business - Abstract
We sought to identify factors that are predictive of liver transplantation or death in patients with primary sclerosing cholangitis (PSC), and to develop and validate a contemporaneous risk score for use in a real-world clinical setting. Analyzing data from 1,001 patients recruited to the UK-PSC research cohort, we evaluated clinical variables for their association with 2-year and 10-year outcome through Cox-proportional hazards and C-statistic analyses. We generated risk scores for short-term and long-term outcome prediction, validating their use in two independent cohorts totaling 451 patients. Thirty-six percent of the derivation cohort were transplanted or died over a cumulative follow-up of 7,904 years. Serum alkaline phosphatase of at least 2.4 × upper limit of normal at 1 year after diagnosis was predictive of 10-year outcome (hazard ratio [HR] = 3.05; C = 0.63; median transplant-free survival 63 versus 108 months; P < 0.0001), as was the presence of extrahepatic biliary disease (HR = 1.45; P = 0.01). We developed two risk scoring systems based on age, values of bilirubin, alkaline phosphatase, albumin, platelets, presence of extrahepatic biliary disease, and variceal hemorrhage, which predicted 2-year and 10-year outcomes with good discrimination (C statistic = 0.81 and 0.80, respectively). Both UK-PSC risk scores were well-validated in our external cohort and outperformed the Mayo Clinic and aspartate aminotransferase-to-platelet ratio index (APRI) scores (C statistic = 0.75 and 0.63, respectively). Although heterozygosity for the previously validated human leukocyte antigen (HLA)-DR*03:01 risk allele predicted increased risk of adverse outcome (HR = 1.33; P = 0.001), its addition did not improve the predictive accuracy of the UK-PSC risk scores. Conclusion: Our analyses, based on a detailed clinical evaluation of a large representative cohort of participants with PSC, furthers our understanding of clinical risk markers and reports the development and validation of a real-world scoring system to identify those patients most likely to die or require liver transplantation.
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- 2019
6. Chemical synthesis of phosphorylated peptides of the carboxy-terminal domain of human p53 by a segment condensation method
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Ettore Appella, Michio Kondo, Marc S. Lewis, Carl W. Anderson, Hiroaki Kodama, Hiroshi Sakamoto, Yuichiro Higashimoto, and Kazuyasu Sakaguchi
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Phosphopeptides ,chemistry.chemical_classification ,Circular dichroism ,Chemistry ,Stereochemistry ,Circular Dichroism ,Molecular Sequence Data ,Peptide ,Condensation reaction ,Biochemistry ,Chemical synthesis ,Peptide Fragments ,Amino acid ,Serine ,Residue (chemistry) ,Humans ,Organic chemistry ,Amino Acid Sequence ,Tumor Suppressor Protein p53 ,Peptide sequence - Abstract
A segment condensation method was developed for the chemical synthesis of large (> 90 amino acid) phosphopeptides and was used to produce phosphorylated and non-phosphorylated derivatives of the C-terminal tetramerization and regulatory domains of human p53 (residues 303-393). Efficient condensation synthesis of the 91 residue p53 domain was achieved in two steps. The non-phosphorylated N-terminal segment p53(303-334) (1) and its derivative phosphorylated at serine 315 (1P315), and the non-phosphorylated middle segment p53(335-360) (2), were synthesized as partially protected peptide thioesters in the solid phase using Boc chemistry. The C-terminal segment p53(361-393) (3) and its derivative phosphorylated at serine 392 (3P392) were synthesized as partially protected peptides in the solid phase using Fmoc chemistry. Phosphoamino acid was incorporated into the N-terminal segment (1P315) at the residue corresponding to p53 serine 315 as Boc-Ser(PO3(Bzl)2)-OH during synthesis. Serine 392 in the C-terminal segment was selectively phosphorylated after synthesis by phosphitylation followed by oxidation. A derivative phosphorylated at serine 378 was synthesized in a one-step condensation of the unphosphorylated N-terminal segment (1) and the phosphorylated long C-terminal segment p53(335-393) (2-3P378). Yields of the ligated peptides after removal of the protecting groups and HPLC purification averaged 60% for the first condensation and 35% for the second condensation. All five p53 peptides exhibited monomer-tetramer association as determined by analytical ultracentrifugation. Circular dichroism spectroscopy revealed that phosphorylation at Ser315 increased the alpha-helical content, which was abolished when Ser392 also was phosphorylated, suggesting an interaction between N-terminal and C-terminal residues of the C-terminal domain of p53.
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- 2009
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7. A genome-wide linkage study in families with major depression and co-morbid unexplained swelling
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Alan W Maclean, M.G. Dunnigan, V. Murray, Carl A. Anderson, Irene McKee, Peter M. Visscher, Walter J. Muir, Douglas Blackwood, David W. Burt, Anthony J. Pelosi, David R. Morrice, and George McDonald
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Adult ,Male ,Adolescent ,Genotype ,Genetic Linkage ,Locus (genetics) ,Genetic determinism ,Cellular and Molecular Neuroscience ,Gene mapping ,Genetic linkage ,medicine ,Edema ,Humans ,Family history ,Genetics (clinical) ,Aged ,Aged, 80 and over ,Genetics ,Depressive Disorder, Major ,Genome, Human ,Genetic heterogeneity ,business.industry ,Middle Aged ,medicine.disease ,Pedigree ,Psychiatry and Mental health ,Phenotype ,Major depressive disorder ,Microsatellite ,Female ,business - Abstract
Major depressive disorder (MDD) is a common heritable condition. The diversity of the phenotype coupled with aetiological and genetic heterogeneity present formidable obstacles in the search for causative genetic loci. Studies of large families with many affected individuals, and the selection of well-defined clinical subgroups of depression, are two ways to reduce this complexity. Unexplained swelling symptoms (USS) are common in women and many patients give a strong personal and family history of depression. Co-morbid depression and swelling symptoms define a useful sub-phenotype for investigating genetic factors in depression. We have completed a genome-wide linkage analysis using 371 microsatellite markers in four families where MDD is co-morbid with USS. Of 47 affected individuals, 28 had both MDD and unexplained swelling, 11 had symptoms of swelling alone, and 8 had MDD alone. Parametric marker-specific analysis identified one suggestive locus, D8S260 (LOD = 2.02) and non-parametric multipoint variance component analysis identified a region on 7p (LOD = 2.10). A 47 cM suggestive linkage region on chromosome 14q (identified by both parametric and non-parametric methods) was identified and investigated further with fine-mapping markers but the evidence for linkage to this region decreased with increased marker information content.
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- 2008
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8. D1 Dopamine Receptors in the Amygdala Exhibit Unique Properties
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Daniel H. Mooney, Jean E. Lachowicz, Richard B. Mailman, David W. Schulz, Carl M. Anderson, John M. Petitto, Clinton D. Kilts, and Sarah K. Leonard
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Dopamine receptor D1 ,History and Philosophy of Science ,Dopamine receptor D3 ,Dopamine receptor ,D2-like receptor ,Chemistry ,General Neuroscience ,Dopamine receptor D2 ,Dopaminergic ,D1-like receptor ,Neuroscience ,General Biochemistry, Genetics and Molecular Biology ,Endogenous agonist - Published
- 2006
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9. Amygdaloid D1 receptors are not linked to stimulation of adenylate cyclase
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David W. Schulz, Sarah K. Leonard, Carl M. Anderson, Richard B. Mailman, Clinton D. Kilts, and Jean E. Lachowicz
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Male ,medicine.medical_specialty ,Dopamine ,D1-like receptor ,Fenoldopam ,Biology ,Rats, Sprague-Dawley ,Radioligand Assay ,Cellular and Molecular Neuroscience ,Adenosine Triphosphate ,Dopamine receptor D1 ,Calmodulin ,Dopamine receptor D3 ,Internal medicine ,Dopamine receptor D2 ,Sulfur Isotopes ,Dopamine receptor D5 ,medicine ,Animals ,Drug Interactions ,Tissue Distribution ,Brain Chemistry ,Guanylyl Imidodiphosphate ,Binding Sites ,Dose-Response Relationship, Drug ,Receptors, Dopamine D1 ,Cell Membrane ,Colforsin ,Isoproterenol ,Adrenergic beta-Agonists ,Benzazepines ,Amygdala ,Rats ,Endocrinology ,nervous system ,D2-like receptor ,Dopamine receptor ,Dopamine Agonists ,Dopamine Antagonists ,Guanosine Triphosphate ,Caudate Nucleus ,Microdissection ,Cyclase activity ,Adenylyl Cyclases - Abstract
In contrast to the classic signal transduction of D1 dopamine receptors in striatum or molecular expression systems, it has been reported that D1 receptor agonists do not stimulate adenylate cyclase in homogenates of microdissected nuclei of the amygdaloid complex. This article examines this phenomenon in detail to determine if lack of cAMP signaling in the amygdaloid complex is an experimental artifact, or an indication of a marked difference from the well-studied basal ganglia terminal fields. Thus, whereas dopamine agonists failed to increase cAMP synthesis in the amygdala, forskolin, guanine nucleotides, or Mg2+ were able to stimulate adenylate cyclase activity in the same preparations. Under several different conditions, caudate preparations responded more robustly than amygdaloid preparations, while amygdala homogenates exhibited higher basal production of cAMP. Whereas the beta-adrenergic agonist isoproterenol was able to stimulate cAMP efflux in membranes from both the caudate and amygdala under a variety of tested conditions, neither dopamine nor fenoldopam (D1 agonist) could stimulate adenylate cyclase in the amygdala. Additionally, while manipulation of Ca2+ and calmodulin affected the differential actions of dopamine in the caudate, no change in these parameters restored sensitivity to dopamine in the amygdala. Together, these data challenge the commonly accepted notion that cAMP is a mandatory signaling pathway for D1 receptors. Because it is now proven that G protein-coupled receptors can signal promiscuously, elucidation of the non-cAMP-dependent signaling mechanisms resulting from D1 activation is clearly critical in understanding how this important receptor functions in situ.
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- 2003
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10. Post-translational modifications and activation of p53 by genotoxic stresses
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Carl W. Anderson and Ettore Appella
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Ubiquitin ,biology ,Biochemistry ,DNA damage ,Acetylation ,biology.protein ,Genotoxic Stress ,Nuclear transport ,Cell cycle ,Signal transduction ,Transcription factor ,Cell biology - Abstract
In unstressed cells, the tumor suppressor protein p53 is present in a latent state and is maintained at low levels through targeted degradation. A variety of genotoxic stresses initiate signaling pathways that transiently stabilize the p53 protein, cause it to accumulate in the nucleus, and activate it as a transcription factor. Activation leads either to growth arrest at the G1/S or G2/M transitions of the cell cycle or to apoptosis. Recent studies point to roles for multiple post-translational modifications in mediating these events in response to genotoxic stresses through several potentially interacting but distinct pathways. The approximately 100 amino-acid N-terminal and approximately 90 amino-acid C-terminal domains are highly modified by post-translational modifications. The N-terminus is heavily phosphorylated while the C-terminus contains phosphorylated, acetylated and sumoylated residues. Antibodies that recognize p53 only when it has been modified at specific sites have been developed, and studies with these reagents show that most known post-translational modifications are induced when cells are exposed to genotoxic stresses. These recent results, coupled with biochemical and genetic studies, suggest that N-terminal phosphorylations are important for stabilizing p53 and are crucial for acetylation of C-terminal sites, which in combination lead to the full p53-mediated response to genotoxic stresses. Modifications to the C-terminus inhibit the ability of this domain to negatively regulate sequence-specific DNA binding; additionally, they modulate the stability, the oligomerization state, the nuclear import/export process and the degree of ubiquitination of p53.
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- 2001
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11. Individual versus social complexity, with particular reference to ant colonies
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Daniel W. McShea and Carl M. Anderson
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Insecta ,Behavior, Animal ,Ants ,Ecology ,media_common.quotation_subject ,Caste ,Foraging ,Social complexity ,Biology ,Ant colony ,General Biochemistry, Genetics and Molecular Biology ,Polyphenism ,Trait ,Animals ,Social Behavior ,General Agricultural and Biological Sciences ,Autonomy ,Sociality ,media_common ,Cognitive psychology - Abstract
Insect societies – colonies of ants, bees, wasps and termites – vary enormously in their social complexity. Social complexity is a broadly used term that encompasses many individual and colony-level traits and characteristics such as colony size, polymorphism and foraging strategy. A number of earlier studies have considered the relationships among various correlates of social complexity in insect societies; in this review, we build upon those studies by proposing additional correlates and show how all correlates can be integrated in a common explanatory framework. The various correlates are divided among four broad categories (sections). Under ‘polyphenism’ we consider the differences among individuals, in particular focusing upon ‘caste’ and specialization of individuals. This is followed by a section on ‘totipotency’ in which we consider the autonomy and subjugation of individuals. Under this heading we consider various aspects such as intracolony conflict, worker reproductive potential and physiological or morphological restrictions which limit individuals’ capacities to perform a range of tasks or functions. A section entitled ‘organization of work’ considers a variety of aspects, e.g. the ability to tackle group, team or partitioned tasks, foraging strategies and colony reliability and efficiency. A final section,‘communication and functional integration’, considers how individual activity is coordinated to produce an integrated and adaptive colony. Within each section we use illustrative examples drawn from the social insect literature (mostly from ants, for which there is the best data) to illustrate concepts or trends and make a number of predictions concerning how a particular trait is expected to correlate with other aspects of social complexity. Within each section we also expand the scope of the arguments to consider these relationships in a much broader sense of'sociality’ by drawing parallels with other ‘social’ entities such as multicellular individuals, which can be understood as ‘societies’ of cells. The aim is to draw out any parallels and common causal relationships among the correlates. Two themes run through the study. The first is the role of colony size as an important factor affecting social complexity. The second is the complexity of individual workers in relation to the complexity of the colony. Consequently, this is an ideal opportunity to test a previously proposed hypothesis that ‘individuals of highly social ant species are less complex than individuals from simple ant species’ in light of numerous social correlates. Our findings support this hypothesis. In summary, we conclude that, in general, complex societies are characterized by large colony size, worker polymorphism, strong behavioural specialization and loss of totipotency in its workers, low individual complexity, decentralized colony control and high system redundancy, low individual competence, a high degree of worker cooperation when tackling tasks, group foraging strategies, high tempo, multi-chambered tailor-made nests, high functional integration, relatively greater use of cues and modulatory signals to coordinate individuals and heterogeneous patterns of worker-worker interaction. Key words: Ants, insect societies, individual complexity, social complexity, polyphenism, totitpotency, work organization, functional integration, sociality.
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- 2001
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12. Phosphorylation of human p53 by p38 kinase coordinates N-terminal phosphorylation and apoptosis in response to UV radiation
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Carl W. Anderson, Dmitry V. Bulavin, Ettore Appella, Shin'ichi Saito, Kazuyasu Sakaguchi, Albert J. Fornace, and M C Hollander
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Chloramphenicol O-Acetyltransferase ,Time Factors ,Transcription, Genetic ,Ultraviolet Rays ,Apoptosis ,Mitogen-activated protein kinase kinase ,p38 Mitogen-Activated Protein Kinases ,General Biochemistry, Genetics and Molecular Biology ,MAP2K7 ,Phosphorylation cascade ,Serine ,Tumor Cells, Cultured ,Humans ,ASK1 ,Phosphorylation ,Molecular Biology ,MAPK14 ,Alanine ,General Immunology and Microbiology ,MAP kinase kinase kinase ,biology ,General Neuroscience ,Cyclin-dependent kinase 2 ,Flow Cytometry ,Molecular biology ,Mutagenesis, Site-Directed ,biology.protein ,Cyclin-dependent kinase 9 ,Mitogen-Activated Protein Kinases ,Tumor Suppressor Protein p53 ,Research Article ,DNA Damage ,Plasmids - Abstract
Components of the ras signaling pathway contribute to activation of cellular p53. In MCF-7 cells, p38 kinase activated p53 more effectively than other members of the ras pathway. p53 and p38 kinase exist in the same physical complex, and co-expression of p38 stabilized p53 protein. In vitro, p38 kinase phosphorylated p53 at Ser33 and Ser46, a newly identified site. Mutation of these sites decreased p53-mediated and UV-induced apoptosis, and the reduction correlated with total abrogation of UV-induced phosphorylation on Ser37 and a significant decrease in Ser15 phosphorylation in mutant p53 containing alanine at Ser33 and Ser46. Inhibition of p38 activation after UV irradiation decreased phosphorylation of Ser33, Ser37 and Ser15, and also markedly reduced UV-induced apoptosis in a p53-dependent manner. These results suggest that p38 kinase plays a prominent role in an integrated regulation of N-terminal phosphorylation that regulates p53-mediated apoptosis after UV radiation.
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- 1999
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13. Redox-Mediated Regulation of p21Waf1/Cip1 Expression Involves a Post-Transcriptional Mechanism and Activation of the Mitogen-Activated Protein Kinase Pathway
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Franca Esposito, Marco Vanoni, Carl W. Anderson, Tommaso Russo, Ettore Appella, Franca Cuccovillo, Filiberto Cimino, Esposito, Franca, F., Cuccovillo, M., Vanoni, F., Cimino, C. W., Anderson, E., Appella, T., Russo, Esposito, F, Cuccovillo, F, Vanoni, M, Cimino, F, Anderson, C, Appella, E, and Russo, T
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Cyclin-Dependent Kinase Inhibitor p21 ,MAPK/ERK pathway ,DNA damage ,Calcium-Calmodulin-Dependent Protein Kinase ,Biology ,HeLa Cell ,medicine.disease_cause ,Biochemistry ,Cyclins ,medicine ,Humans ,RNA, Messenger ,RNA Processing, Post-Transcriptional ,Protein kinase A ,Regulation of gene expression ,Cell growth ,Oxidative Stre ,Molecular biology ,Cell biology ,Oxidative Stress ,Gene Expression Regulation ,Mitogen-activated protein kinase ,Calcium-Calmodulin-Dependent Protein Kinases ,biology.protein ,Tumor Suppressor Protein p53 ,Signal transduction ,Reactive Oxygen Specie ,Reactive Oxygen Species ,Oxidation-Reduction ,Oxidative stress ,Human ,HeLa Cells ,Signal Transduction - Abstract
p21(waf1/cip1) gene expression is induced by DNA damage in cells with wild-type p53 and contributes to the arrest of cell growth. It was demonstrated that under many experimental conditions, including oxidative stress, p21(waf1/cip1) expression can be induced through p53-independent pathways. Since most of these experimental conditions induce the phosphorylation of mitogen-activated protein kinase (MAPK) and thus its activation, we evaluated p21(waf1/cip1) mRNA levels in cells exposed to an oxidative stress, induced by diethylmaleate (Et2Mal), and in which the MAPK pathway was blocked. The expression of a dominant-negative mutant of MEK, the MAPK kinase that phosphorylates and activates MAPK, and of a dominant-negative [Asn17]Ras mutant prevented the Et2Mal-induced accumulation of p21(waf1/cip1) mRNA. Similarly, the expression of MEK- and of [Asn17]Ras mutants decreased the 12-O-tetradecanoyl-phorbol 13-acetate (TPA)-mediated p21(waf1/cip1) induction. Furthermore, TPA-induced and serum-induced p21(waf1/cip1) mRNA accumulation was blocked by pretreating the cells with the antioxidant compound N-acetylcysteine, suggesting that oxidative stress is involved in these responses. p21(waf1/cip1) mRNA levels reached a maximum within 2 h of adding Et2Mal or TPA; however, the rate of transcription from a p21(waf1/cip1)-promoter construct did not increase during this period. In contrast, cells treated with actinomycin D show an increase of p21(waf1/cip1) mRNA stability after Et2Mal treatment. This result suggests that the increase in p21(waf1/cip1) mRNA at early times results from post-transcriptional regulatory events. Longer exposure to TPA may activate p21(waf1/cip1) gene transcription through an Sp1-dependent mechanism, while Et2Mal treatment gradually inhibits p21(waf1/cip1) gene transcription through oxidative changes that affect Sp1 binding to DNA.
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- 1997
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14. Risk-Based Evaluation of Ground-Water Contamination by Agricultural Pesticides
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U. Sunday Tim, Peeyush Varshney, and Carl E. Anderson
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Alachlor ,Pesticide application ,Environmental engineering ,Simazine ,Pesticide ,chemistry.chemical_compound ,chemistry ,Maximum Contaminant Level ,Environmental science ,Water quality ,Atrazine ,Computers in Earth Sciences ,Risk assessment ,Water Science and Technology - Abstract
The recently completed National Pesticide Survey conducted by the United States Environmental Protection Agency (EPA) has identified the presence of various pesticides in ground water. The detection of pesticides in the nation's ground water has raised concerns for public health which has led resource managers in federal and state agencies to recognize that risk assessment is vital for water quality protection. This paper presents a methodology for risk-based evaluation of ground-water contamination by agricultural pesticides. The methodology utilizes the Risk of Unsaturated/Saturated Transport and Transformation of Chemical Concentrations (RUSTIC) model to provide simulations that yield the probable risks associated with a given pesticide. Risk is expressed in terms of the probability of predicted pesticide mass exceeding its recommended health standards. Three widely used agricultural herbicides, simazine, atrazine, and alachlor, were evaluated using long-term (1960–1986) meteorological data for Ames, Iowa. Results indicate that for a well 8 m deep located 200 m horizontally from a pesticide application area in an alluvial sand and gravel setting, the probability of exceeding the maximum contaminant level (MCL) for simazine is about 35%, whereas it is nearly zero for both atrazine and alachlor. Prudent use of simazine in very susceptible areas is recommended.
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- 1993
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15. Optical coefficient-based multivariate calibration on near-infrared spectroscopy
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Robert P. Cogdill, Zhenqi Shi, Harald Martens, and Carl A. Anderson
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Signal processing ,Chemistry ,Applied Mathematics ,Near-infrared spectroscopy ,Astrophysics::Instrumentation and Methods for Astrophysics ,Analytical chemistry ,Generalized least squares ,Signal ,Analytical Chemistry ,Chemometrics ,Interference (communication) ,Principal component analysis ,Calibration ,Biological system - Abstract
The time and expense of calibration development limit the feasibility of NIR spectroscopy for many industrial applications, with a major portion of the costs being related to creation of a sufficient set of calibration samples. Net analyte signal (NAS) and generalized least squares (GLS) pre-processing have been proposed in the literature as methods to simplify multivariate calibration by reducing the quantity of calibration samples by orthogonalizing or shrinking interference signals. Synthetic calibration has also been reported as a method to combine interference signals with pure component spectra to generate virtual calibration models, thereby reducing the number of real calibration samples required. The goals of this paper were to (1) compare theoretical and practical differences between NAS and GLS pre-processing and (2) explore the potential of simplified NIR calibrations, both empirical and synthetic, constructed using optical coefficient-based signal processing on predicting chemical compositions of pharmaceutical powder mixtures. A reduced calibration dataset including only one pharmaceutical powder mixture composition and pure component spectra was used for both empirical and synthetic calibrations. Absorption and reduced scattering coefficients, obtained from spatially-resolved spectroscopy, were used herein as interference signals in NAS/GLS pre-processing for both calibrations. As a result, NAS and GLS were shown to be equivalent in both theoretical and practical senses. After optical coefficient-based signal processing, simplified calibrations, both empirical and synthetic, were demonstrated to have similar model performance as generic pre-processing methods such as SNV and derivative, while requiring fewer principal components and achieving a lower prediction error. Copyright © 2010 John Wiley & Sons, Ltd.
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- 2010
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16. The retinoblastoma protein is phosphorylated on multiple sites by human cdc2
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Karen J. Buchkovich, Carl W. Anderson, Daniel R. Marshak, Jacqueline A. Lees, and Ed Harlow
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Phosphopeptides ,Molecular Sequence Data ,Peptide Mapping ,Retinoblastoma Protein ,Mass Spectrometry ,General Biochemistry, Genetics and Molecular Biology ,Substrate Specificity ,CDC2 Protein Kinase ,Humans ,Electrophoresis, Gel, Two-Dimensional ,Trypsin ,Protein phosphorylation ,Amino Acid Sequence ,Phosphorylation ,Nuclear protein ,E2F ,Molecular Biology ,Cells, Cultured ,Chromatography, High Pressure Liquid ,Cyclin-dependent kinase 1 ,General Immunology and Microbiology ,biology ,Kinase ,General Neuroscience ,Cell Cycle ,Retinoblastoma protein ,Precipitin Tests ,Biochemistry ,Phosphoprotein ,biology.protein ,Research Article - Abstract
The retinoblastoma gene product (pRB) is a nuclear phosphoprotein that is thought to play a key role in the negative regulation of cellular proliferation. pRB is phosphorylated in a cell cycle dependent manner, and studies in both actively dividing and differentiated cells suggest that this modification may be essential for cells to progress through the cell cycle. Using tryptic phosphopeptide mapping we have shown that pRB is phosphorylated on multiple serine and threonine residues in vivo and that many of these phosphorylation events can be mimicked in vitro using purified p34cdc2. Using synthetic peptides corresponding to potential cdc2 phosphorylation sites, we have developed a strategy which has allowed the identification of five sites. S249, T252, T373, S807 and S811 are phosphorylated in vivo, and in each case these sites correspond closely to the consensus sequence for phosphorylation by p34cdc2. This and the observation that pRB forms a specific complex with p34cdc2 in vivo suggests that p34cdc2 or a p34cdc2-related protein is a major pRB kinase.
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- 1991
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17. An exploratory study of the manufacturing strategy process in practice
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Carl R. Anderson, Ronald T. Pannesi, and Ann S. Marucheck
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Strategic planning ,Process management ,business.industry ,Strategy and Management ,media_common.quotation_subject ,Technology strategy ,Organizational culture ,Cost accounting ,Competitor analysis ,Management Science and Operations Research ,Marketing strategy ,Industrial and Manufacturing Engineering ,Economics ,Quality (business) ,Strategic management ,Marketing ,business ,media_common - Abstract
This work presents an exploratory empirical study of the process of formulating and implementing manufacturing strategy within the framework of overall corporate strategy, as practiced by a cross-sectional representation of leading-edge firms. A conference was held where executives representing six firms in the following industries—computer equipment, pharmaceuticals, valves, telecommunications, furniture, and electrical submersible pumps—described the process of manufacturing strategy formulation and implementation as practiced within their firms. Although the firms represented a diversity in terms of sales volume, longevity, and geographic location, they shared several commonalities including Class A use of MRP, excellent customer service records, and maintenance of accurate manufacturing data bases. In addition, despite increasingly competitive conditions within their respective industries, none of the firms considered itself to be the low cost producer in the industry. Competitive strength was sustained through innovation, quality, and service. The process of strategy formulation varied among the firms in terms of participants, complexity, and degree of formalization. Several findings emerged from the conference. First, all firms followed a traditional hierarchical top-down approach in formulating manufacturing strategy under the umbrella of corporate strategy. In general, the process was reactive to corporate strategy although the executives reported greater involvement on the part of manufacturing in corporate strategic planning through the identification of competitive strengths and weaknesses. Manufacturing strategy was also viewed as reactive to marketing strategy with marketing playing the role of boundary spanner in assessing competitors and customers to support the manufacturing strategy effort. Finally, some of the executives stated that several of the traditional manufacturing resource decision categories were constrained by corporate philosophy. Examples of constraining policies included facilities, capacity, vertical integration, and organization. On the other hand, all the firms were able to develop strategies for process choice/technology, quality, manufacturing planning and control, and people. The executives described the implementation process as one of gaining employee acceptance of the strategy through lower level involvement and teamwork. Although communication was a major concern in implementing the strategy, the executives all stated that the most difficult task was changing corporate culture, which was often entrenched in obsolete cost accounting systems, to make it supportive of the new strategy. Other problems confronted by the firms included maintaining consistency among managers across all levels in the organization, gaining top management support, and developing appropriate styles of leadership. The study shows that these firms' processes of formulating manufacturing strategy seem to follow the general conceptual models developed in the academic literature. However, the executives indicated that the real benefits of strategy come from implementation, which is a less structured and behaviorally oriented process. Future research must address infrastructural issues including culture, performance measurement, and managerial style.
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- 1990
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18. Crystallization and preliminary X-ray diffraction studies of the human adenovirus serotype 2 proteinase with peptide cofactor
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Stephan L. Ginell, Edwin M. Westbrook, Lisa J. Keefe, and Carl W. Anderson
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Protein Conformation ,Sodium ,Coenzymes ,chemistry.chemical_element ,Crystallography, X-Ray ,Biochemistry ,law.invention ,National Synchrotron Light Source ,chemistry.chemical_compound ,law ,Sodium citrate ,Escherichia coli ,Cloning, Molecular ,Serotyping ,Crystallization ,Molecular Biology ,Adenoviruses, Human ,Resolution (electron density) ,X-ray ,Cysteine Endopeptidases ,Crystallography ,chemistry ,X-ray crystallography ,Peptides ,Selenium ,Research Article - Abstract
Recombinant human adenovirus serotype 2 proteinase (both native and selenomethionine-substituted) has been crystallized in the presence of the serotype 12, 11-residue peptide cofactor. The crystals (space group P3(1)21 or P3(2)21, one molecule per asymmetric unit, a = b = 41.3 angstrum, c = 197.0 angstrum) grew in solutions containing 20-40% 2-methyl-2,4-pentanediol (MPD), 0.1-0.2 M sodium citrate, and 0.1 M sodium HEPES, pH 5.0-7.5. Diffraction data (84% complete to 2.2 angstrum resolution with Rmerge of 0.0335) have been measured from cryopreserved native enzyme crystals with the Argonne blue (1,024 x 1,024 pixel array) charge-coupled device detector at beamline X8C at the National Synchrotron Light Source (operated by Argonne National Laboratory's Structural Biology Center). Additionally, diffraction data from selenomethionine-substituted proteinase, 65% complete to 2.0 angstrum resolution with Rmerge values ranging 0.05-0.07, have been collected at three X-ray energies at and near the selenium absorption edge. We have determined three of the six selenium sites and are initiating a structure solution by the method of multiwavelength anomalous diffraction phasing.
- Published
- 1995
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19. Identifying protein interactions. Experimental approaches
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Carl W. Anderson and Ettore Appella
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Chemistry ,Cell Biology ,Computational biology ,Molecular Biology ,Biochemistry ,Protein–protein interaction - Published
- 2005
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20. Identifying protein interactions. Computational approaches
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Ettore Appella and Carl W. Anderson
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Text mining ,Computer science ,business.industry ,Cell Biology ,Computational biology ,business ,Molecular Biology ,Biochemistry ,Protein–protein interaction - Published
- 2005
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21. Self-organized behavior: Case studies
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Carl M. Anderson
- Subjects
World Wide Web ,Multidisciplinary ,Software ,General Computer Science ,Computer science ,business.industry ,business - Published
- 2001
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22. The extended organism: The physiology of animal-built structures
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Carl M. Anderson
- Subjects
Engineering ,Multidisciplinary ,General Computer Science ,business.industry ,Computational biology ,business ,Organism - Published
- 2000
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23. Dynamic interactions of proteins in complex networks
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Carl W. Anderson and Ettore Appella
- Subjects
chemistry.chemical_classification ,DNA ligase ,Amyloid ,biology ,Peptide ,Cell Biology ,Computational biology ,Biochemistry ,Protein–protein interaction ,Protein structure ,Ubiquitin ,chemistry ,BARD1 ,biology.protein ,Molecular Biology ,Binding selectivity - Abstract
Recent advances in techniques such as NMR and EPR spectroscopy have enabled the elucidation of how proteins undergo structural changes to act in concert in complex networks. The three minireviews in this series highlight current findings and the capabilities of new methodologies for unraveling the dynamic changes controlling diverse cellular functions. They represent a sampling of the cutting-edge research presented at the 17th Meeting of Methods in Protein Structure Analysis, MPSA2008, in Sapporo, Japan, 26-29 August, 2008 (http://www.iapsap.bnl.gov). The first minireview, by Christensen and Klevit, reports on a structure-based yeast two-hybrid method for identifying E2 ubiquitin-conjugating enzymes that interact with the E3 BRCA1/BARD1 heterodimer ligase to generate either mono- or polyubiquitinated products. This method demonstrated for the first time that the BRCA1/BARD1 E3 can interact with 10 different E2 enzymes. Interestingly, the interaction with multiple E2 enzymes displayed unique ubiquitin-transfer properties, a feature expected to be common among other RING and U-box E3s. Further characterization of new E3 ligases and the E2 enzymes that interact with them will greatly enhance our understanding of ubiquitin transfer and facilitate studies of roles of ubiquitin and ubiquitin-like proteins in protein processing and trafficking. Stein et al., in the second minireview, describe recent progressmore » in defining the binding specificity of different peptide-binding domains. The authors clearly point out that transient peptide interactions mediated by both post-translational modifications and disordered regions ensure a high level of specificity. They postulate that a regulatory code may dictate the number of combinations of domains and post-translational modifications needed to achieve the required level of interaction specificity. Moreover, recognition alone is not enough to obtain a stable complex, especially in a complex cellular environment. Increasing evidence indicates that disordered domains can acquire structural features that modulate the binding and strength of the signaling cascade. Whereas the first two minireviews describe ways in which protein interactions are modulated, the third, by Tompa, focuses on the importance of protein disorder in a subset of amyloid proteins. It is apparent that within this group, part of the polypeptide chain remains disordered during amyloid formation. Moreover, the disordered segments have different amino acid composition and physicochemical characteristics, which suggests that they may play a role in amyloid stability. The disordered region may serve as a linker to connect the ordered core and a globular domain, maintaining the stability and structure of the globular domain and minimizing protein refolding upon amyloid formation. As techniques in protein chemistry advance, we are learning more and more about the mechanisms that regulate and are regulated by protein interactions. The three minireviews in this series offer a glimpse of the complex dynamics fundamental to protein-protein interactions. In the future, we expect that the knowledge gained will help to augment our ability to control complex pathologies and treat diverse diseases states.« less
- Published
- 2009
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24. Introduction: Post-translational modifications - S-palmitoylation, proline isomerization, disulfide bond isomerization
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Carl W. Anderson and Ettore Appella
- Subjects
Palmitoylation ,Chemistry ,Stereochemistry ,Posttranslational modification ,Disulfide bond ,Cell Biology ,Proline ,Molecular Biology ,Biochemistry ,Isomerization - Published
- 2007
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25. The Line on I-Me-Mine
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M. B. Handspicker, Min Pai, Ellen S. Best, Ruth Housman, Carl R. Anderson, and B. Bower
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Optics ,business.industry ,General Engineering ,Line (text file) ,business ,Geology - Published
- 2001
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26. Frequency and duration of profitable hedging margins for texas cotton producers, 1980–1986
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Carl E. Shafer, Carl G. Anderson, and Wendell C. Wood
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Economics and Econometrics ,Labour economics ,Accounting ,Economics ,Monetary economics ,Duration (project management) ,General Business, Management and Accounting ,Finance - Published
- 1989
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27. CONTINGENCIES AFFECTING STRATEGY FORMULATION AND EFFECTIVENESS: AN EMPIRICAL STUDY
- Author
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Frank T. Paine and Carl R. Anderson
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Strategy making ,Process management ,Strategy and Management ,media_common.quotation_subject ,Mode (statistics) ,Quadrant (instrument) ,Variety (cybernetics) ,Empirical research ,Management of Technology and Innovation ,Perception ,Satisficing ,Business and International Management ,Marketing ,Risk taking ,Psychology ,media_common - Abstract
Recent attempts at clarifying the strategy formulation problem have centred around managerial perceptions of environmental uncertainty (the need for information) and perceptions of the need for internal change. This research empirically tests one such formulation, a four quadrant model incorporating these two perceptual variables. Data sources were sixty-two longitudinal case studies involving a variety of organizations and environments. Characteristics of strategy making in each quadrant and differences between successful and unsuccessful organizations were examined through quantification of nine strategic variables for each case. Results indicated each quadrant differed from the others on a number of important strategic properties including risk taking, role performance of the key policy-maker(s), degree of innovation, extent of futurity in planning, and success of the organization. Second, strategic properties which predicted differences in success within each quadrant included perception of uncertainty, maximizing versus satisficing behaviour, innovation, futurity of planning, and role performance of the policy-maker. Third, successful firms in each quadrant tended to follow a strategic mode appropriate for the conditions. The four successful modes were adaptive planning, planning, adaptive entrepreneurial, and entrepreneural or stress mode. Motivational aspects of these results and implications for future research are discussed.
- Published
- 1977
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28. Fatty acid composition at the 2-position of ether-linked and diacyl ethanolamine and choline phosphoglycerides of human brain tumors
- Author
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Carl E. Anderson and Daniel H. Albert
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Clinical chemistry ,Oligodendroglioma ,Brain tumor ,Ether ,Astrocytoma ,Biochemistry ,chemistry.chemical_compound ,Ethanolamine ,medicine ,Humans ,chemistry.chemical_classification ,Brain Neoplasms ,Phosphatidylethanolamines ,Fatty Acids ,Organic Chemistry ,Fatty acid ,Glioma ,Cell Biology ,Human brain ,medicine.disease ,Glycerylphosphorylcholine ,medicine.anatomical_structure ,chemistry ,Composition (visual arts) ,Meningioma ,Polyunsaturated fatty acid - Abstract
The acyl composition of ethanolamine and choline phosphoglycerides from a series of human brain tumors was determined and compared to that of normal human gray matter. Six glioblastomas, one astrocytoma, one oligodendroglioma, and one meningioma were analyzed. The total fatty acid composition of ethanolamine phosphoglycerides generally had a higher percentage of 18∶1, 18∶2ω6, and 22∶5ω3 and a lower percentage of 22∶6ω3 than that of normal gray matter. Choline phosphoglycerides from the tumors also contained a higher than normal percentage of 18∶2ω6. Separate analysis of the acyl groups at the 2 position of the diacyl and ether-linked components of the phosphoglycerides revealed that the diacyl component of ethanolamine phosphoglyceride from the tumors had lower than normal amount of 22∶6ω3 and a higher than normal amount of 18∶1 and 18∶2ω6. The acyl composition of ether-linked ethanolamine phosphoglycerides genearally contained a higher percentage of 20∶4ω6 and a lower percentage of 18∶1 compared to the corresponding fraction from normal gray matter. The astrocytoma analyzed had fatty acid profiles similar to those of the control with the exception of a greater 18∶2ω6 content. These data demonstrate that the composition of the acyl moiety at the 2 position of diacyl and ether-linked phosphoglycerides of brain tumors differs from the corresponding component from normal gray matter and that the ether-linked ethanolamine phosphoglycerides provide an important pool of polyunsaturated fatty acids from brain tumor phospholipids.
- Published
- 1977
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29. Reversal of Deafness After Renal Transplantation in Alport's Syndrome
- Author
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Horst Zincke, Norbert T. Ott, Carl F. Anderson, and Thomas J. McDonald
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Adult ,Male ,medicine.medical_specialty ,Adolescent ,Hearing loss ,Remission, Spontaneous ,Nephritis, Hereditary ,Cadaver kidney ,Deafness ,Kidney ,Cadaver ,otorhinolaryngologic diseases ,Humans ,Transplantation, Homologous ,Medicine ,Hearing improvement ,Child ,S syndrome ,business.industry ,Hearing Tests ,Kidney Transplantation ,Surgery ,Transplantation ,Otorhinolaryngology ,Ear, Inner ,Female ,medicine.symptom ,business - Abstract
Six patients (five men and one woman) with Alport's syndrome underwent successful renal transplantation (four received kidneys from cadaver donors and two received allografts from living, related donors). One patient who had received a cadaver kidney had substantial hearing improvement and the others had stabilization of hearing. Hearing loss in Alport's syndrome is progressive. The reversal of deafness in one of our patients and stabilization in the others made us wonder whether an inherited enzymopathy had been reversed, which then mitigated the deafness.
- Published
- 1978
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30. Studies of Artesian Waters in Chicago and Surrounding Territory
- Author
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Carl B. Anderson and F. W. DeWolf
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Geography ,Environmental protection ,Artesian aquifer ,General Chemistry ,Archaeology ,Water Science and Technology - Published
- 1915
- Full Text
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31. Metabolism of alkyl glyceryl ethers in the rat
- Author
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Claude Piantadosi, Carl E. Anderson, James Lim, and Edward O. Oswald
- Subjects
chemistry.chemical_classification ,organic chemicals ,Organic Chemistry ,Phospholipid ,Glyceryl Ethers ,Ether ,Alcohol ,Cell Biology ,Metabolism ,Biochemistry ,chemistry.chemical_compound ,Ethanolamine ,chemistry ,cardiovascular system ,Choline ,lipids (amino acids, peptides, and proteins) ,cardiovascular diseases ,Alkyl ,circulatory and respiratory physiology - Abstract
The metabolism of(14)C- and(3)H-labeled alkyl glyceryl ethers after intraperitoneal injections was examined in the liver and intestine of the rat. Additionally, in vitro experiments were conducted with intestinal homogenates and intetinal contents.From these investigations it was concluded that the liver and the intestine metabolize the alkyl glyceryl ethers very differently. Intestinal contents can alter alpha-batyl alcohol, as indicated by preliminary experiments, and intestinal cells contain enzyme systems which convert the alkyl glyceryl ethers to the mono- and di-acyl derivatives. Very little esterified glyceryl ethers were found in the liver lipids. The intestine contains an enzyme system which, although it has a greater specificity for chain length and for isomeric position of the ether than that of the liver system, does cleave the glyceryl ethers.From in vivo studies, of intestinal tissue it was concluded that all of the injected glyceryl ethers were converted intact the ethanolamine, serine, and choline alkyl glyceryl ether phospholipids; with the use of alpha-batyl alcohol, the phosphatidyl ethanolamine fraction, contained most of the labeled glyceryl ether phospholipid with beta-batyl alcohol, alpha-chimyl, and beta-chimyl alcohols, the phosphatidyl, choline fraction contained most of the labeled alkyl glyceryl ether phospholipid. No significant amount (
- Published
- 1968
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32. Phosphate transfer enzymes in cartilage
- Author
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Carl E. Anderson, Julio Ludowieg, and Edward J. Eyring
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chemistry.chemical_classification ,Cartilage ,Immunology ,Adenylate kinase ,Matrix (biology) ,Phosphate ,chemistry.chemical_compound ,medicine.anatomical_structure ,Enzyme ,Rheumatology ,chemistry ,Biochemistry ,medicine ,Immunology and Allergy ,Pharmacology (medical) ,Embryonic chick ,Pyruvate kinase - Abstract
An enzymically stable powder prepared from embryonic chick cartilage has permitted demonstration and partial purification of pyruvate kinase and adenylate kinase for the first time in cartilage. Pyruvate kinase from cartilage catalyzes synthesis of UTP, a process of potential usefulness to mucopolysaccharide synthesis. It has also been possible to conclusively demonstrate the presence of glucose-6-phosphatase in several fractions of cartilage extract, including one rich in matrix mucopolysaccharide. Un enzymaticamente stabile pulvere, preparate ab cartilagine de embryones de gallina, ha permittite pro le prime vice le demonstration e le purification partial de cinase de pyruvato e de cinase de adenylato in cartilagine. Cinase de pyruvato ab cartilagine age como catalysta in le synthese de triphosphato de uridina, un processo de utilitate potential in le synthese de mucopolysaccharido. Esseva etiam possibile demonstrar definitivemente le presentia de glucosa-6-phosphatase in plure fractiones de extracto de cartilagine, incluse un que esseva ric in mucopolysaccharido de matrice.
- Published
- 1963
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33. Water Binding Capacity of 22 L-Amino Acids from Water Activity 0.33 to 0.95
- Author
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Carl B. Anderson and Lloyd D. Witter
- Subjects
chemistry.chemical_classification ,Chromatography ,endocrine system diseases ,biology ,Water activity ,Monosodium glutamate ,Glutamate receptor ,nutritional and metabolic diseases ,biology.organism_classification ,Amino acid ,Monopotassium glutamate ,chemistry.chemical_compound ,chemistry ,Organic chemistry ,Proline ,Water binding ,hormones, hormone substitutes, and hormone antagonists ,Bacteria ,Food Science - Abstract
The water sorption isotherms of 22 L-amino acids were determined from a water activity of 0.331–0.946. In addition, water sorption isotherms of monosodium glutamate, monopotassium glutamate, monosodium aspartate, monopotassium aspartate, and hemimagnesium aspartate were determined over the same aw ranges. Proline and γ-aminobutyric acid had a greater capacity to bind water than the other free amino acids examined. The water binding capacity of glutamate and aspartate as the monosodium, monopotassium or the hemimagnesium salts was greatly enhanced. These data may be useful in screening amino acids as potential humectants and in understanding the mechanism by which bacteria cope with reduced
- Published
- 1982
- Full Text
- View/download PDF
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