123 results on '"Aebersold, Ruedi"'
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2. From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions
3. Phenotypic characterization of two novel cell line models of castration‐resistant prostate cancer
4. Deciphering MET‐dependent modulation of global cellular responses to DNA damage by quantitative phosphoproteomics
5. The interactome of KRAB zinc finger proteins reveals the evolutionary history of their functional diversification
6. High‐throughput proteomic analysis of FFPE tissue samples facilitates tumor stratification
7. Identification of Protein Abundance Changes in Hepatocellular Carcinoma Tissues Using PCT–SWATH
8. Application of SWATH Proteomics to Mouse Biology
9. Proteotyping Gene Dosage Effects in Genetic Diseases
10. Comprehensive proteome analysis of human skeletal muscle in cachexia and sarcopenia: a pilot study
11. Applications and Developments in Targeted Proteomics: From SRM to DIA/SWATH
12. Rapid and reproducible proteotype acquisition from biopsy level samples
13. Minimal sample requirement for highly multiplexed protein quantification in cell lines and tissues by PCT-SWATH mass spectrometry
14. Applications of targeted proteomics in systems biology and translational medicine
15. Surfaceome of classical Hodgkin and non-Hodgkin lymphoma
16. Using data-independent, high-resolution mass spectrometry in protein biomarker research: Perspectives and clinical applications
17. Enzymatic generation of peptides flanked by basic amino acids to obtain MS/MS spectra with 2× sequence coverage
18. Direct analytical sample quality assessment for biomarker investigation: Qualifying cerebrospinal fluid samples
19. Highlights of B/D-HPP and HPP Resource Pillar Workshops at 12th Annual HUPO World Congress of Proteomics
20. The calcineurin signaling network evolves via conserved kinase‐phosphatase modules that transcend substrate identity (586.3)
21. Genetic variability and the quantitative proteome (95.3)
22. pyOpenMS: A Python-based interface to the OpenMS mass-spectrometry algorithm library
23. Mass spectrometry-driven phosphoproteomics: patterning the systems biology mosaic
24. Quantitative measurements of N‐linked glycoproteins in human plasma by SWATH‐MS
25. A Bovine PeptideAtlas of milk and mammary gland proteomes
26. Range of protein detection by selected/multiple reaction monitoring mass spectrometry in an unfractionated human cell culture lysate
27. PASSEL: The PeptideAtlas SRMexperiment library
28. Targeted Proteomics
29. The HUPO initiative on Model Organism Proteomes, iMOP
30. Systematic quantification of peptides/proteins in urine using selected reaction monitoring
31. Recent Workshops of the HUPO Human Plasma Proteome Project (HPPP): A bridge with the HUPO CardioVascular Initiative and the emergence of SRM targeted proteomics
32. Quantitative proteomics of microbes: Principles and applications to virulence
33. Structural analysis of vascular endothelial growth factor receptor‐2/ligand complexes by small‐angle X‐ray solution scattering
34. Beyond ATM: The protein kinase landscape of the DNA damage response
35. AN INTEGRATED EXPERIMENTAL WORKFLOW TO INCREASE THROUGHPUT AND DATA ROBUSTNESS FOR ANALYSIS OF MAMMALIAN PROTEIN INTERACTION NETWORKS
36. The Protein Information and Property Explorer 2: Gaggle-like exploration of biological proteomic data within one webpage
37. Using Spectral Libraries for Peptide Identification from Tandem Mass Spectrometry (MS/MS) Data
38. AN INTEGRATED EXPERIMENTAL WORKFLOW TO INCREASE THROUGHPUT AND DATA ROBUSTNESS FOR ANALYSIS OF MAMMALIAN PROTEIN INTERACTION NETWORKS
39. Mapping and measuring molecular networks in cells
40. A guided tour of the Trans‐Proteomic Pipeline
41. Trans-Proteomic Pipeline supports and improves analysis of electron transfer dissociation data sets
42. Proteins that underlie neoplastic progression of ulcerative colitis
43. Getting a grip on proteomics data – Proteomics Data Collection (ProDaC)
44. BiomarkerDigger: A versatile disease proteome database and analysis platform for the identification of plasma cancer biomarkers
45. Quantitative proteomics investigation of pancreatic intraepithelial neoplasia
46. 7thHUPO World Congress of Proteomics: Launching the Second Phase of the HUPO Plasma Proteome Project (PPP-2) 16-20 August 2008, Amsterdam, The Netherlands
47. Approaches to labeling and identification of active site residues in glycosidases
48. Targeted proteomic strategy for clinical biomarker discovery
49. Report on EU-USA Workshop: How Systems Biology Can Advance Cancer Research (27 October 2008)
50. Proteome Analysis of Legionella Vacuoles Purified by Magnetic Immunoseparation Reveals Secretory and Endosomal GTPases
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