Includes bibliographical references., The Berg River, Western Cape, South Africa, is an example of a catchment region where human pressures and conservation of natural resources collide. The river receives effluents from two large settlements and several smaller adjacent villages, including that of industrial and extensive agricultural activity. The estuary is one of the largest in South Africa and rated as the third most important conservation zone in the country. In this study, the chemical speciation of heavy metals in the river sediment was determined in order to evaluate the extent of pollution. Chemical speciation using sequential chemical extraction of sediment samples was used to measure the mobility and bioavailability of cadmium (Cd), lead (Pb), arsenic (As), chromium (Cr), nickel (Ni), cobalt (Co), iron (Fe), copper (Cu), zinc (Zn) and manganese (Mn). The metals Cd and Zn were found to be the most mobile and bioavailable. The study also examined the vertical distribution of heavy metals in estuarine sediment cores to evaluate the extent of heavy metal contamination with time and the degree to which heavy metals are influenced by other sedimentological parameters such as grain size, sediment composition and organic matter. Three sediment cores, ranging from 160 to 240 em long, were collected using a mechanical vibrating corer. The vertical distribution of metals in the cores showed that the metal concentration was higher at the top and middle of the cores. Based on the enrichment factor (EF) and anthropogenic factor (AF) values, it is suggested that the sediments of the estuary are not polluted with Co, Mn, Cu, Ni, Zn and Fe but moderately to highly polluted with Pb, As, Cd and Cr. The data reported provide a useful baseline for establishing heavy metal concentrations in the estuary and will be an important consideration in future sediment quality studies. The spatial distribution of the metals was also studied to understand how location is linked to metal concentration. The average concentration of metals in the core sediment increased with increasing distance from the mouth of the river. The adsorption behaviour of the estuary sediment with micro-pollutants has a significant influence on the environmental quality of estuary waters. For this reason, the absorption of Pb, Cr, Cu, Ni, and Zn onto sediment was study. It was found that the sediments of the Berg River estuary have a low potential for absorption of Ni and Zn making these metals more mobile and bioavailable.