1. A High-Resolution PheWAS Approach To Elucidate Functional Influences Of Alcohol-Implicated Variants From Large-Scale GWAS
- Author
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School of Medicine, Wei Q. Deng, Joshua Gray, Kyla Belisario, Joshua Gray, Emily Levitt, Sandra Sanchez-Roige, Abraham A. Palmer, James MacKillop, School of Medicine, Wei Q. Deng, and Joshua Gray, Kyla Belisario, Joshua Gray, Emily Levitt, Sandra Sanchez-Roige, Abraham A. Palmer, James MacKillop
- Abstract
A high-resolution PheWAS approach to elucidate functional influences of alcohol-implicated variants from large-scale GWAS Wei Q. Deng1,2, Kyla Belisario1,2, Joshua Gray3, Emily Levitt1,2, Sandra Sanchez-Roige4, Abraham A. Palmer4, James MacKillop1,2,* 1. Peter Boris Centre for Addictions Research, St. Joseph’s Healthcare Hamilton, Hamilton, Ontario L8P 3R2, Canada; 2. Department of Psychiatry and Behavioural Neurosciences, McMaster University, Canada; 3. Department of Medical and Clinical Psychology, Uniformed Services University, Bethesda, MD 20814, USA; 4. Department of Psychiatry, University of California San Diego, San Diego, CA, USA Methodology PRS-association Results Strategy: a high-resolution phenome-wide (PheWAS) approach, parsing GWAS findings derived from coarser phenotypes; Analytical units: 448 robustly-implicated risk variants for alcohol phenotypes and the polygenic risk scores (PRS) for sub-scales of the AUDIT (Consumption/Severity); Phenotypic outcomes: 41 curated phenotypes in 7 categories: alcohol use, alcohol reinforcing value, drinking motives, other addictive behaviors, commonly comorbid psychiatric syndromes, impulsivity, and personality; Study population: a community-based sample of 1,534 individuals of European ancestry; Conclusions: evidence of multifarious nature of genetic risk for alcohol consumption and problematic use, with genetic influences that act on both alcohol-specific and non-alcohol specific mechanisms. Abstract Materials Conclusion Population Assessment for Tomorrow’s Health (PATH) Registry - a community study by PBCAR on health behaviors - Participants completed psychological measures, a small number of cognitive tests, and provided DNA sample. - No clinical conditions were required - N = 1,534 samples with adequate genetic and phenotypic data A priori alcohol phenotype SNPs: - GWAS catalogue - Alcohol phenotype codes - Sample size > 10,000 in at least one homogenous population; - association p < 5E-8; - 448 (out of 546) SNP, RITM0024964, Strategy: a high-resolution phenome-wide (PheWAS) approach, parsing GWAS findings derived from coarser phenotypes; Analytical units: 448 robustly-implicated risk variants for alcohol phenotypes and the polygenic risk scores (PRS) for sub-scales of the AUDIT (Consumption/Severity); Phenotypic outcomes: 41 curated phenotypes in 7 categories: alcohol use, alcohol reinforcing value, drinking motives, other addictive behaviors, commonly comorbid psychiatric syndromes, impulsivity, and personality; Study population: a community-based sample of 1,534 individuals of European ancestry; Conclusions: evidence of multifarious nature of genetic risk for alcohol consumption and problematic use, with genetic influences that act on both alcohol-specific and non-alcohol specific mechanisms.
- Published
- 2022