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In the 25 years since the first DNA sequences were obtained from the extinct moa, ancient DNA analyses have significantly advanced our understanding of New Zealand's unique fauna. Here, we review how DNA extracted from ancient faunal remains has provided new insights into the evolutionary histories and phylogenetic relationships of New Zealand animals, and the impacts of human activities upon their populations. Moreover, we review how ancient DNA has played a key role in improving our ability to taxonomically identify fragmentary animal remains, determine biological function within extinct species, reconstruct past faunas and communities based on DNA preserved in sediments, resolve aspects of the ecology of extinct animals and characterising prehistoric parasite faunas. As ancient DNA analyses continue to become increasingly applied, and sequencing technologies continue to improve, the next 25 years promises to provide many more exciting new insights and discoveries about New Zealand's unique fauna. [ABSTRACT FROM AUTHOR]

The generic placement of the enigmatic and extinct Logania depressa from New Zealand has been uncertain due to the paucity of available plant material. This diminutive plant has only been collected once from the central North Island, New Zealand, by William Colenso on 22 February 1847. Logania depressa is dioecious and the single collection comprises only male flowers and does not include female flowers or fruit that feature generic diagnostic characters. Previously its relationship to Geniostoma has been considered and its affinities to Orianthera are unknown. Orianthera has been recently recognised as a segregate of Logania. Using leaf material from a small fragment of L. depressa held in Allan Herbarium (CHR) we recovered 9,368 bp of plastid sequence data that mapped to Mitreola yangchuensis, with Mitreola being the closest generic relative of Logania for which whole genome data was available. Available genetic data for Loganiaceae is limited to several chloroplast markers, including the rps16 intron, petD intron, and petD–petB intergenic spacer. From the novel plastid sequence data for Logania depressa, 48 bp of the rps16 intron, 45 bp of the petD intron and 49 bp of the petD–petB intergenic spacer could be recovered to compare with available Loganiaceae sequences. Phylogenetic analysis of these sequences confirmed L. depressa as the only New Zealand member of Logania sens. str., but its relationships to Australian species are unresolved. [ABSTRACT FROM AUTHOR]

The generic relationships of the extinct Trilepidea adamsii (Cheeseman) Tiegh. from New Zealand have been uncertain due to the paucity and age of available plant material. Last seen nearly seventy years ago in 1954, fresh material has not been available for comparative studies. Trilepidea adamsii has morphological affinities to Alepis flavida (Hook.f.) Tiegh., Peraxilla colensoi (Hook.f.) Tiegh. and P. tetrapetala (L.f.) Tiegh. with all taxa being placed in subtribe Elytranthinae, but precise phylogenetic relationships have not been determined. Using leaf material of Trilepidea adamsii from a specimen in Allan Herbarium (CHR) collected in 1920 from near Thames, Coromandel Peninsula, North Island, we recovered approximately 93% of the plastid genome by mapping Illumina sequence reads to a plastid genome sequence of Elytranthe albida (Blume) Blume, with Elytranthe being another genus of Loranthaceae. We also sequenced plastid genomes of Alepis flavida, Peraxilla colensoi and Peraxilla tetrapetala and conducted a phylogenetic analysis using other Loranthaceae plastid genome sequences from GenBank. Phylogenetic analyses of the plastid genome sequences confirmed T. adamsii as sister to a clade comprising Alepis and Peraxilla. While the level of sequence divergence is low, we do not consider that the generic boundaries need to be reassessed. We suggest re-examination of anatomical and morphological traits is warranted to better understand evolution in this lineage of four endemic mistletoe species. [ABSTRACT FROM AUTHOR]

The arrival of humans in New Zealand around 750 years ago resulted in widespread faunal extinctions including the endemic Waitaha penguin (Megadyptes waitaha). Previously thought to have only bred on coastal South Island and Stewart Island, recent genetic reanalysis of prehistoric large penguin bones from the lower North Island indicates that the Waitaha penguin may have been a common resident. Here we synthesise previous studies and present new palaeontological and archaeological evidence to suggest that the Waitaha penguin was probably breeding in the lower North Island at the time of human arrival, and did not represent vagrant individuals from more southerly breeding colonies. The elimination of breeding Megadyptes from the North Island would add to the already significant avifaunal losses from New Zealand, of which the North Island suffered the greatest biodiversity loss after the arrival of humans. [ABSTRACT FROM AUTHOR]