1. Relationship of type 1 diabetes to ancestral proportions and HLA DR/DQ alleles in a sample of the admixed Cuban population.
- Author
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Diaz-Horta O, Cintado A, Fernandez-De-Cossio ME, Nazabal M, Ferrer A, Roca J, Camacho H, Benítez J, Ale M, Villarreal A, Molina G, Vera M, Cabrera-Rode E, and Novoa L
- Subjects
- Adult, Alleles, Case-Control Studies, Cuba, Diabetes Mellitus, Type 1 epidemiology, Disease Susceptibility, Female, Gene Frequency, Genetic Markers, Genetic Predisposition to Disease, Genotype, HLA-DQ Antigens immunology, HLA-DR Antigens immunology, Haplotypes, Humans, Male, Polymerase Chain Reaction, Polymorphism, Single Nucleotide, Risk Assessment, Diabetes Mellitus, Type 1 genetics, Diabetes Mellitus, Type 1 immunology, Genes, MHC Class II, HLA-DQ Antigens genetics, HLA-DR Antigens genetics
- Abstract
Background: Incidence of type 1 diabetes varies widely around the world, probably due to ethnic differences across populations among other factors., Aims: To determine whether there is an association between disease and ancestry proportions; and to control disease-HLA associations for possible confounding by admixture or population stratification., Subjects and Methods: 100 cases and 129 controls participated in the study. Ancestry informative markers, which have considerable differences in frequency between European, West African and Native American populations were used. Type 1 diabetes associated HLA susceptibility/protection alleles were ascertained by PCR using specific primers. Statistical analyses were conducted using STRUCTURE 2.1, ADMIXMAP 3.7, SPSS 16.0 and STRAT 1.0 packages., Results: The results of logistic regression implemented in ADMIXMAP 3.7 indicated that European ancestry was associated with type 1 diabetes mellitus with an odds ratio of 5.7 corresponding to one unit change in European admixture proportion. Association was found between HLA alleles and disease, DQA1*0501, *0301 DQB1*0201 and DRB1*0301, *0401 being susceptibility alleles and DRB1*1501, DQA1*0102/3 and DQB1*0602 being protective alleles., Conclusions: We found an association between European ancestry and type 1 diabetes in our sample, indicating the contribution of ethnicity to incidence differences. Previously reported associations of HLA DR/DQ alleles with disease are confirmed for the admixed Cuban population.
- Published
- 2010
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