1. Comparative Transcriptomic Analyses by RNA-seq to Elucidate Differentially Expressed Genes in the Muscle of Korean Thoroughbred Horses
- Author
-
Hak-Kyo Lee, Kyoung Tag Do, Neelesh Sharma, Do Luong Huynh, Jae-Young Choi, Dong-Kee Jeong, Young-Hwa Chung, Nam Eun Kim, Amit Kumar Singh, Mrinmoy Ghosh, Raj Kumar Mongre, Hyun-Woo Cho, Ki-Duk Song, Zhang Jiao Jiao, Jeong-Woong Park, and Byung-Wook Cho
- Subjects
0301 basic medicine ,Bioengineering ,RNA-Seq ,Biology ,Real-Time Polymerase Chain Reaction ,Selective breeding ,Applied Microbiology and Biotechnology ,Biochemistry ,Genome ,Transcriptome ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Physical Conditioning, Animal ,Animals ,Cluster Analysis ,Horses ,Molecular Biology ,Gene ,Genetics ,Regulation of gene expression ,Sequence Analysis, RNA ,Gene Expression Profiling ,Muscles ,Reproducibility of Results ,Molecular Sequence Annotation ,General Medicine ,Gene expression profiling ,Gene Ontology ,030104 developmental biology ,Gene Expression Regulation ,030217 neurology & neurosurgery ,Biotechnology - Abstract
The athletic abilities of the horse serve as a valuable model to understand the physiology and molecular mechanisms of adaptive responses to exercise. We analyzed differentially expressed genes in triceps brachii muscle tissues collected from Eonjena Taeyang and Jigusang Seryeok Thoroughbred horses and their co-expression networks in a large-scale RNA-sequence dataset comparing expression before and after exercise. High-quality horse transcriptome data were generated, with over 22 million 90-bp pair-end reads. By comparing the annotations, we found that MYH3, MPZ, and PDE8B genes in Eonjena Taeyang and PDE8B and KIF18A genes in Jigusang Seryeok were upregulated before exercise. Notably further, we observed that PPP1R27, NDUFA3, TNC, and ANK1 in Eonjena Taeyang and HIF1A, BDNF, ADRB2, OBSCN, and PER3 in Jigusang Seryeok have shown upregulation at the postexercise period. This investigation suggested that genes responsible for metabolism and oxidative phosphorylations associated with endurance and resistance exercise were highly expressed, whereas genes encoding structural proteins were generally suppressed. The expression profile of racehorses at pre- and postexercise will provide credible reference for further studies on biological effects such as responses to stress and adaption of other Thoroughbred horse, which might be useful for selective breeding for improvement of traits in commercial production.
- Published
- 2016
- Full Text
- View/download PDF