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Nanipora Miyazaki & Reimer, 2015 is a recently discovered genus of aragonite-skeleton producing octocorals closely related to the blue coral genus Heliopora de Blainville, 1830. Since its discovery, Nanipora has been reported from coral reefs in Okinawa, Japan, and Thailand, and from seagrass beds in the northern South China Sea. However, it remains little known and studied. Here, we report on the unexpected discovery of an abundance of Nanipora colonies in shallow waters less than 2-m deep around a CO2 vent from the uninhabited volcanic island of Iwotorishima, Okinawa, in southern Japan. Nanipora colonies were found covering both coral rubble and hard substrates, alongside a few soft coral and zoantharian species. Polyps were pale white in color with none brown or darker in coloration as in some recent reports. As the original description of N. kamurai from Zamami Island in Okinawa describes the species as azooxanthellate, as the current Iwotorishima specimens also appear to be, and recently reported specimens from Thailand, Dongsha Atoll, and Yaeyama are zooxanthellate, it may be that there are more than one Nanipora species; the type species N. kamurai that is also likely at Iwotorishima, and a zooxanthellate species that constitutes the other records. Although Nanipora is not well studied, its presence at this volcanic CO2 seep suggests it has the ability to survive under unique and extreme environmental conditions, rendering it as a potentially important subject of study in the face of increasing ocean acidification.

Atoll islands are small, low-lying and highly vulnerable to sea level rise (SLR). Because these islands are fully composed of the skeletons from coral reef creatures, the healthy coral ecosystem plays a pivotal role in island resilience against SLR. The environmental deterioration of reefs caused by increases in the human population has been recently reported, but the timing and process are unknown. We investigated the annual black bands in a coral boring core from Fongafale Island, the capital of Tuvalu, which is a symbolic atoll country that is being submerged due to SLR. The iron redox state and microbial gene segments in the coral skeleton might be new environmental indicators that reveal the linkage between anthropogenic activity and coral reef ecosystems. Our findings provide the first demonstration that iron sulfide has formed concentrated black layers since 1991 under the seasonal anoxic conditions inside coral annual bands. Since the 1990s, increasing human activity and domestic waste-induced eutrophication has promoted sludge and/or turf algae proliferation with the subsequent seasonal destruction, resulting in sulfate reduction by anaerobic bacteria. With the recent climate variability, these anthropogenic effects have induced the mass mortality of branching corals, deteriorated the coral reef ecosystem and deprived the resilience of the island against SLR.

Mass bleaching is the most significant threat to coral reefs. The United States National Oceanic and Atmospheric Administration monitors world sea surface temperature (SST) and releases warnings for bleaching based on degree heating weeks (DHW), which is the accumulation of temperature anomalies exceeding the monthly maximum mean SST for a given region. DHW values >4.0 °C-weeks are thought to induce bleaching, and those >8.0 °C-weeks are thought to result in widespread bleaching and some mortality. This study validates the effectiveness of DHW as a mass bleaching index by on-site historical observation at eight sites in the northwestern Pacific Ocean. The mass bleaching events occurred during different years at different sites. The recorded years of the bleaching events matched well with DHW values >8 °C-weeks, and the logistically projected probability of bleaching against DHW showed a positive relationship. DHW provides a reasonable threshold for bleaching.

Carbonate production by large benthic foraminifers is sometimes comparable to that of corals and coralline algae, and contributes to sedimentation on reef islands and beaches in the tropical Pacific. Population dynamic data, such as population density and size structure (size-frequency distribution), are vital for an accurate estimation of shell production of foraminifers. However, previous production estimates in tropical environments were based on a limited sampling period with no consideration of seasonality. In addition, no comparisons were made of various estimation methods to determine more accurate estimates. Here we present the annual gross shell production rate of Baculogypsina sphaerulata, estimated based on population dynamics studied over a 2-yr period on an ocean reef flat of Funafuti Atoll (Tuvalu, tropical South Pacific). The population density of B. sphaerulata increased from January to March, when northwest winds predominated and the study site was on the leeward side of reef islands, compared to other seasons when southeast trade winds predominated and the study site was on the windward side. This result suggested that wind-driven flows controlled the population density at the study site. The B. sphaerulata population had a relatively stationary size-frequency distribution throughout the study period, indicating no definite intensive reproductive period in the tropical population. Four methods were applied to estimate the annual gross shell production rates of B. sphaerulata. The production rates estimated by three of the four methods (using monthly biomass, life tables and growth increment rates) were in the order of hundreds of g CaCO3 m−2 yr−1 or cm−3 m−2 yr−1, and the simple method using turnover rates overestimated the values. This study suggests that seasonal surveys should be undertaken of population density and size structure as these can produce more accurate estimates of shell productivity of large benthic foraminifers.

Research combining the analysis of coral distribution in volcanically acidified waters with laboratory culture experiments indicates that reef communities may shift from reef-building hard corals to non-reef-building soft corals under CO2 partial pressure (pCO2) levels of 550–970 μatm that are predicted to occur by the end of this century.

Symbiont-bearing large benthic foraminifers (LBFs) are widely distributed around coral reefs. If the physiological responses of LBFs to environmental changes can be recognized at an individual level, LBFs could serve as highly accurate bioindicators. In this study, chlorophyll a, respiration, and photosynthesis of Baculogypsina sphaerulata individuals were measured, and whether these physiological traits could be estimated based on the color of the holobiont (foraminifera and the diatom symbionts) was examined. Chlorophyll a content was estimated using a* and b* values of holobiont color represented in CIE L*a*b* color space. Photosynthetic performance decreased significantly with increasing whiteness (L*). These results indicated chlorophyll content as well as photosynthetic performance of Baculogypsina could be directly estimated using the holobiont color. The increased whiteness in color and decreased photosynthetic performance were mainly observed under low-light environment, possibly indicating symbiotic algae were shrunk into the central part of the host shell due to prolonged exposure to adverse conditions.

In 2007, high-temperature-induced mass coral mortality was observed in a well-developed fringing reef area on the southeastern coast of Ishigaki Island, Japan. To analyze the response of the corals to thermal stress, the coral cover was examined using Quickbird data, taken across the reef flat just before and after the bleaching event and performing a reef scale horizontal 2-dimensional thermal model simulation. The Quickbird data consisted of multispectral (MSS) imagery, which had a spatial resolution of 2.4 m, and panchromatic (PAN)-fused multispectral imagery, which had a 0.6-m spatial resolution. The observed changes in coral cover implied that the delineation of partially bleached coral was more precise with PAN + MSS. The classification accuracy achieved using PAN + MSS (93%) was superior to that obtained using MSS (88%). The in situ water temperature observations and 2-dimensional thermal model simulation results indicated that the water temperature fluctuated greatly in the inner reef area in late July 2007. Different thermal stress indices, including daily average temperature, daily maximum excess temperature, and daily accumulated temperature, were examined to define a suitable index that represented the severity of the thermal stress on coral cover. The results suggested that the daily accumulated temperature that occurred during the maximum sea surface temperature period of the bleaching season provided the best predictor of bleaching. The changes in water temperature, bathymetry, and coral patch size affected the severity of bleaching; therefore, the spatial dependence of these variables was examined using Moran’s I and Lagrange multiplier tests. An investigation of the effect of coral patch sizes on coral bleaching indicated that large coral patches were less affected than the small patches, which were more likely to suffer bleaching and coral mortality.

Lanyu and Lutao Islands to the southeast of Taiwan are located in the northern extension of the Luzon Arc. Crustal deformation of these islands provides a key to understand the collision of the Luzon Arc against Taiwan. To clarify the style and the rate of vertical movement during the Holocene, uplifted coral reefs fringing these two islands were investigated. Living corals were also investigated for comparison with fossil corals. It was found that Isopora palifera lives dominantly in the upper slope of the present-day fringing coral reefs in Lanyu Island at an average depth of 101 ± 46 cm (one standard deviation) below mean sea level. Using I. palifera as an accurate indicator of paleo-sea levels, Holocene relative sea-level changes were reconstructed. Lanyu Island has been uplifted continuously at a rate of 2.0 mm yr−1, at least during the late Holocene from 2,269 cal. yr BP to the present. Lutao Island has been uplifted at an average rate of 1.2 mm yr−1, since at least 5,749 cal. yr BP, although it is unclear whether the uplift was continuous. The present observations, combined with the GPS displacement field and deep crustal structure, suggest that the continuous uplift is related to aseismic slip on the Longitudinal Valley Fault.

The distributions and population densities of large benthic foraminifers (LBFs) were investigated on reef flats of the Majuro Atoll, Marshall Islands. Annual sediment production by foraminifers was estimated based on population density data. Predominant LBFs were Calcarina and Amphistegina, and the population densities of these foraminifers varied with location and substratum type on reef flats. Both foraminifers primarily attached to macrophytes, particularly turf-forming algae, and were most abundant on an ocean reef flat (ORF) and in an inter-island channel near windward, sparsely populated islands. Calcarina density was higher on windward compared to leeward sides of ORFs, whereas Amphistegina density was similar on both sides of ORFs. These foraminifers were more common on the ocean side relative to the lagoon side of reef flats around a windward reef island, and both were rare or absent in nearshore zones around reef islands and on an ORF near windward, densely populated islands. Foraminiferal production rates varied with the degree to which habitats were subject to water motion and human influences. Highly productive sites (>103 g CaCO3 m−2 year−1) included an ORF and an inter-island channel near windward, sparsely populated islands, and a seaward area of a reef flat with no reef islands. Low-productivity sites (

A Geographic Information System (GIS)-aided flow-tracking technique was adopted to investigate nutrient exchange rates between specific benthic communities and overlying seawater in a fringing reef of Ishigaki Island, subtropical Northwestern Pacific. Net exchange rates of NO3 −, NO2 −, NH4 +, PO4 3−, Total-N and Total-P were estimated from concentration changes along the drogue trajectories, each of which was tracked by the Global Positioning System and plotted on a benthic map to determine the types of benthic habitat over which the drogue had passed. The observed nutrient exchange rates were compared between 5 typical benthic zones (branched-coral (B) and Heliopora communities (H), seaweed-reefrock zone (W), bare sand area (S), and seagrass meadow (G)). The dependence of nutrient exchange rates on nutrient concentrations, physical conditions and benthic characteristics was analyzed by multiple regression analysis with the aid of GIS. The spatial correlation between nutrient exchange rates and benthic characteristics was confirmed, especially for NO3 − and PO4 3−, which were usually absorbed in hydrographically upstream zones B and W and regenerated in downstream zones H and G. NO3 − uptake in zones B and W was concentration-dependent, and the uptake rate coefficient was estimated to be 0.58 and 0.67 m h−1, respectively. Both nutrient uptake in zone W and regeneration in zone H were enhanced in summer. The net regeneration ratio of NO3 −/PO4 3− in zone H in summer ranged 5.2 to 34 (mean, 17.4), which was somewhat higher than previously measured NO3 −/PO4 3− for sediment pore waters around this zone (1.1–8.5). Nutrient exchanges in zone S were relatively small, indicating semi-closed nutrient cycling at the sediment-water interface of this zone. NH4 + efflux from sediments was suggested in zone G. The data suggest that the spatial pattern of nutrient dynamics over the reef flat community was constrained by zonation of benthic biota, and that abiotic factors such as nutrient concentrations and flow rates, influenced nutrient exchange rates only in absorption-dominated communities such as zones B and W.

Larval dispersal and recruitment are important factors that determine the distribution of adult corals. The relationships between larval dispersal, recruitment, and the adult distribution of the blue octocoral, Heliopora coerulea, were investigated on Shiraho Reef, Ishigaki Island, southwest Japan. Heliopora coerulea is a surface brooder that releases planulae in June or July on Shiraho Reef. We observed planulae between 1998 and 2000 and found that they did not swim actively; instead, they crawled into their settlement positions after becoming grounded on the substratum. Planulae occurred throughout the water column and were dispersed by tidal and wind-driven currents around the parent population on the reef flat. Recruitment was observed only within 350 m of the parent populations, including areas between the branches of the adult colony. The planulae of H. coerulea had a narrow dispersal range as a result of their mostly benthic, shorter larval duration, and the influence of weaker currents. Thus, the dispersal distance of larvae is determined by their position in the water column, the currents that deliver the larvae, and the competency period of the larvae. The narrow dispersal range of H. coerulea was consistent with recruitment of sexually derived larvae onto their natal reef.

Groundwater discharge from adjacent terrestrial areas can be a potentially important nutrient source to coastal coral reefs, since adjacent lands are often overlaid with permeable bedrock such as limestone. The quantity of groundwater nitrogen discharged into the Shiraho and Kabira coral reefs from their namesake watersheds on Ishigaki Island southwest of the Ryukyu Islands, Japan (24°19′–37′N, 124°4′–21′E) was monitored. These watersheds were subject to different types of nitrogen loading. The groundwater nitrogen discharge was compared by two independent methods, one based on measuring dissolved inorganic nitrogen (DIN) concentrations in the groundwater near the coastline, the other by estimating nitrogen loading from various land uses within the watershed. For a common watershed, the two methods agreed within a factor of two. The Shiraho reef received 4- or 5.5-fold more nitrogen than the Kabira reef. Groundwater discharge contributes significantly to the reef nitrogen budget, and is potentially a key factor controlling the biomass and succession of aquatic vegetation of the reefs.

Larval dispersal and recruitment are important in determining adult coral distribution; however, few studies have been made of coral larval dispersal. This study examined the larval behavior, survivorship competency periods and settlement of two brooding corals, Heliopora coerulea and Pocillopora damicornis, in relation to different potential larval dispersal patterns. We also examined the lipid content of H. coerulea as a means of flotation and a source of energy. Planulae of H. coerulea were on average 3.7 mm in length, lacked zooxanthellae, and were mostly benthic, probably because of restricted movement and low lipid content (54% by dry weight). Planulae of P. damicornis were on average 1.0 mm in length, had zooxanthellae and swam actively. The competency period of H. coerulea was shorter (30 days) than that of P. damicornis (100 days). Forty percent of H. coerulea planulae crawled onto the substrata within 1 h of release, and 47% settled within 6 h. By contrast, fewer than 10% of P. damicornis planulae crawled onto the substrata within the first hour and 25% settled within 6 h of release. The planulae of H. coerulea may have a narrower dispersal range than those of P. damicornis, settling and recruiting near parent colonies. Thus, brooding corals exhibit variations in larval dispersal patterns, which are characterized by their position in the water column and competency periods.

A fully automated, continuous-flow-through type analyzer was developed to observe rapid changes in the concentration of total inorganic carbon (CT) in coastal zones. Seawater and an H3PO4 solution were fed into the analyzer's mixing coil by two high-precision valveless piston pumps. The CO2 was stripped from the seawater and moved into a carrier gas, using a newly developed continuous-flow-through CO2 extractor. A mass flow controller was used to assure a precise flow rate of the carrier gas. The CO2 concentration was then determined with a nondispersive infrared gas analyzer. This analyzer achieved a time-resolution of as good as 1 min. In field experiments on a shallow reef flat of Shiraho (Ishigaki Island, Southwest Japan), the analyzer detected short-term, yet extreme, variations in CT which manual sampling missed. Analytical values obtained by the analyzer on the boat were compared with those determined by potentiometric titration with a closed cell in a laboratory: CT(flow-through) = 0.980 x CT(titration) + 38.8 with r2 = 0.995 (n = 34; September 1998).

Kabira Reef is a well-developed fringing reef situated in a monsoon area where the dominant wind direction changes seasonally: south in summer and north in winter. Circulation in this reef shows a marked wind influence. The circulation pattern under calm wind conditions is characterized by an inflow of ocean waters into the moat over the reef crest and an outflow through a prominent channel. Current vectors change according to wind conditions, and this pattern is weakened and strengthened under southern and northern wind conditions, respectively. We establish a simple model to explain these circulation patterns with two factors: wind and a fundamental circulation pattern under calm conditions. We estimate the ratios of the component of wind to that of the fundamental circulation. The ratios reach 3 and 10 in absolute values under southern and northern wind conditions, respectively. These results can be applied to water circulation throughout the year, with the southern wind-driven circulation dominant in the summer, and the northern wind-driven circulation dominant in the winter. While trade wind conditions often result in a constant circulation pattern, monsoonal wind conditions make the circulation pattern vary according to the seasons.