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Collective behaviour is common in bacteria, plants and animals, and therefore occurs across ecosystems, from biofilms to cities. With collective behaviour, social interactions among individuals propagate to affect the behaviour of groups, whereas group-level responses in turn affect individual behaviour. These cross-scale feedback loops between individuals, populations and their environments can provide fitness benefits, such as the efficient exploitation of uncertain resources, as well as costs, such as increased resource competition. Although the social mechanics of collective behaviour are increasingly well-studied, its role in ecosystems remains poorly understood. Here we introduce collective movement into a model of consumer-resource dynamics to demonstrate that collective behaviour can attenuate consumer-resource cycles and promote species coexistence. We focus on collective movement as a particularly well-understood example of collective behaviour. Adding collective movement to canonical unstable ecological scenarios causes emergent social-ecological feedback, which mitigates conditions that would otherwise result in extinction. Collective behaviour could play a key part in the maintenance of biodiversity.

Background Comorbidities such as undernutrition and parasitic infections are widespread in India and other tuberculosis (TB)-endemic countries. This study examines how these conditions as well as food supplementation and parasite treatment might alter immune responses to Mycobacterium tuberculosis (Mtb) infection and risk of progression to TB disease. Methods This is a 5-year prospective clinical trial at Jawaharlal Institute of Post Graduate Medical Education and Research in Puducherry, Tamil Nadu, India. We aim to enroll 760 household contacts (HHC) of adults with active TB in order to identify 120 who are followed prospectively for 2 years: Thirty QuantiFERON-TB Gold Plus (QFT-Plus) positive HHCs ≥ 18 years of age in four proposed groups: (1) undernourished (body mass index [BMI] 2); (2) participants with a BMI ≥ 18.5 kg/m2 who have a parasitic infection (3) undernourished participants with a parasitic infection and (4) controls—participants with BMI ≥ 18.5 kg/m2 and without parasitic infection. We assess immune response at baseline and after food supplementation (for participants with BMI 2) and parasite treatment (for participants with parasites). Detailed nutritional assessments, anthropometry, and parasite testing through polymerase chain reaction (PCR) and microscopy are performed. In addition, at serial time points, these samples will be further analyzed using flow cytometry and whole blood transcriptomics to elucidate the immune mechanisms involved in disease progression. Conclusions This study will help determine whether undernutrition and parasite infection are associated with gene signatures that predict risk of TB and whether providing nutritional supplementation and/or treating parasitic infections improves immune response towards this infection. This study transcends individual level care and presents the opportunity to benefit the population at large by analyzing factors that affect disease progression potentially reducing the overall burden of people who progress to TB disease. Trial registration ClinicalTrials.gov; NCT03598842; Registered on July 26, 2018; https://clinicaltrials.gov/ct2/show/NCT03598842

In life histories with generation overlap, selection that acts differently on different life-stages can produce reservoirs of genetic variation, for example, in long-lived iteroparous adults or long-lived dormant propagules. Such reservoirs provide “migration from the past” to the current population, and depending on the trend of environmental change, they have the potential either to slow adaptive evolution or accelerate it by re-introducing genotypes not affected by recent selection (e.g., through storage effect in a fluctuating environment). That is, the effect of generation overlap is a “double-edged sword,” with each edge cutting in a different direction. Here, we use sexual (quantitative trait) and asexual (clonal) models to explore the effects of generation overlap on adaptive evolution in a fluctuating environment, either with or without a trend in the mean environment state. Our analyses show that when environmental stochasticity scaled by strength of selection is intermediate and when the trend in mean environment is slow, intermediate values of generation overlap can maximize the rate of response to selection and minimize the adaptation lag between the trait mean and the environmental trend. Otherwise, increased generation overlap results in smaller selection response and larger adaptation lag. In the former case, low generation overlap results in low heritable trait variance, while high generation overlap increases the “migration load” from the past. Therefore, to understand the importance of rapid evolution and eco-evolutionary dynamics in the wild for organisms with overlapping generations, we need to understand the interaction of generation overlap, environmental stochasticity, and strength of selection.

Infections of maize with phytopathogenic and toxinogenic Fusarium spp. may occur throughout the cultivation period. This can cause different types of diseases in vegetative and generative organs of the plant. Along with these infections, mycotoxins are often produced and accumulated in affected tissues, which could pose a significant risk on human and animal health when entering the food and feed chain. Most important fungal species infecting European maize belong to the Fusarium sections Discolour and Liseola, the first being more prevalent in cooler and humid climate regions than the second predominating in warmer and dryer areas. Coexistence of several Fusarium spp. pathogens in growing maize under field conditions is the usual case and may lead to multi-contamination with mycotoxins like trichothecenes, zearalenone and fumonisins. The pathways how the fungi gain access to the target organs of the plant are extensively described in relation to specific symptoms of typical rot diseases regarding ears, kernels, rudimentary ears, roots, stem, leaves, seed and seedlings. Both Gibberella and Fusarium ear rots are of major importance in affecting the toxinogenic quality of grain or ear-based products as well as forage maize used for human or animal nutrition. Although rudimentary ears may contain high amounts of Fusarium toxins, the contribution to the contamination of forage maize is minor due to their small proportion on the whole plant dry matter yield. The impact of foliar diseases on forage maize contamination is regarded to be low, as Fusarium infections are restricted to some parts on the leaf sheaths and husks. Mycotoxins produced in rotted basal part of the stem may contribute to forage maize contamination, but usually remain in the stubbles after harvest. As the probability of a more severe disease progression is increasing with a prolonged cultivation period, maize should be harvested at the appropriate maturity stage to keep Fusarium toxin contamination as low as possible. Ongoing surveillance and research is needed to recognise changes in the spectrum of dominating Fusarium pathogens involved in mycotoxin contamination of maize to ensure safety in the food and feed chain.

Background Malnutrition and diabetes are risk factors for active tuberculosis (TB), possible risk factors for latent TB infection (LTBI), and may interact to alter their effect on these outcomes. Studies to date have not investigated this interaction. Methods We enrolled 919 newly diagnosed active TB patients and 1113 household contacts at Primary Health Centres in Puducherry and Tamil Nadu, India from 2014 to 2018. In cross-sectional analyses, we used generalized estimating equations to measure additive and multiplicative interaction of body mass index (BMI) and diabetes on two outcomes, active TB and LTBI. Results Among overweight or obese adults, active TB prevalence was 12-times higher in diabetic compared to non-diabetic participants, 2.5-times higher among normal weight adults, and no different among underweight adults (P for interaction

Background Reducing delay to accessing care is necessary to reduce the Tuberculosis (TB) burden in high incidence countries such as India. This study aimed to identify factors associated with delays in seeking care for TB in Southern India. Methods We analyzed data from newly diagnosed, smear-positive, culture-confirmed, pulmonary TB patients in the Regional Prospective Observational Research for TB (RePORT) cohort in Puducherry and Tamil Nadu, India. Data were collected on demographic characteristics, symptom duration, and TB knowledge, among other factors. Delay was defined as cough ≥4 weeks before treatment initiation. Risky alcohol use was defined by the AUDIT-C score which incorporates information about regular alcohol use and binge drinking. TB knowledge was assessed by knowing transmission mode or potential curability. Results Of 501 TB patients, 369 (73.7%) subjects delayed seeking care. In multivariable analysis, risky alcohol use was significantly associated with delay (aOR 2.20, 95% CI: 1.31, 3.68). Delay was less likely in lower versus higher income groups (10,000 rupees/month, aOR 0.31, 95% CI: 0.12, 0.78). TB knowledge was not significantly associated with delay. Conclusions Local TB programs should consider that risky alcohol users may delay seeking care for TB. Further studies will be needed to determine why patients with higher income delay in seeking care. Electronic supplementary material The online version of this article (doi:10.1186/s12879-017-2629-9) contains supplementary material, which is available to authorized users.

Nonhost species can strongly affect the timing and progression of epidemics. One central interaction—between hosts, their resources, and parasites—remains surprisingly underdeveloped from a theoretical perspective. Furthermore, key epidemiological traits that govern disease spread are known to depend on resource density. We tackle both issues here using models that fuse consumer–resource and epidemiological theory. Motivated by recent studies of a phytoplankton–zooplankton–fungus system, we derive and analyze a family of dynamic models for parasite spread among consumers in which transmission depends on consumer (host) and resource densities. These models yield four key insights. First, host–resource cycling can lower mean host density and inhibit parasite invasion. Second, host–resource cycling can create Allee effects (bistability) if parasites increase mean host density by reducing the amplitude of host–resource cycles. Third, parasites can stabilize host–resource cycles; however, host–resource cycling can also cause disease cycling. Fourth, resource dependence of epidemiological traits helps to govern the relative dominance of these different behaviors. However, these resource dependencies largely have quantitative rather than qualitative effects on these three-species dynamics. Given the extent of these results, host–resource–parasite interactions should become more fundamental components of the burgeoning theory for the community ecology of infectious diseases.

The ongoing radicalization over an extended period under the presidency of Hugo Chavez contrasts with revolutions elsewhere. The Chavez government has passed through increasingly radical stages beginning with moderate policies in 1999–2000, and leading to widespread expropriations after 2007. Political victories initiated each new stage. The escalations from one stage to the next helped identify “enemies” of the process of change. Government victories and radicalization infused rank-and-file Chavistas with a sense of optimism. The Venezuelan process recalls the concept of permanent revolution espoused by Leon Trotsky, but there are areas of divergence: First, in contrast to the Venezuelan case, Trotsky insisted that the working class and its vanguard party play the lead role untied to their class enemies. Second, Chavez throughout his 12 years of rule has occasionally accepted compromise arrangements with the adversaries of change.

Models of infectious disease dynamics focus on describing the temporal and spatial variations in disease prevalence, and on understanding the factors that affect how many cases will occur in each time period and which individuals are likely to become infected. Classical methods for selecting and fitting models, mostly motivated by human diseases, are almost always based solely on raw counts of infected and uninfected individuals. We begin by reviewing the main classical approaches to parameter estimation, and some of their applications. We then review recently developed methods which enable representation of component processes such as infection and recovery, with observation models that acknowledge the complexities of the sampling and detection processes. We demonstrate the need to account for detectability in modeling disease dynamics, and explore a number of mark–recapture and occupancy study designs for estimating disease parameters while simultaneously accounting for variation in detectability. We highlight the utility of different modeling approaches and also consider the typically strong assumptions that may actually serve to limit their utility in general application to the study of disease dynamics (e.g., assignment of individuals to discrete disease states when underlying state space is more generally continuous; transitions assumed to be simple first-order Markov; temporal separation of hazard and transition events).

Traits affecting ecological interactions can evolve on the same time scale as population and community dynamics, creating the potential for feedbacks between evolutionary and ecological dynamics. Theory and experiments have shown in particular that rapid evolution of traits conferring defense against predation can radically change the qualitative dynamics of a predator–prey food chain. Here, we ask whether such dramatic effects are likely to be seen in more complex food webs having two predators rather than one, or whether the greater complexity of the ecological interactions will mask any potential impacts of rapid evolution. If one prey genotype can be well-defended against both predators, the dynamics are like those of a predator–prey food chain. But if defense traits are predator-specific and incompatible, so that each genotype is vulnerable to attack by at least one predator, then rapid evolution produces distinctive behaviors at the population level: population typically oscillate in ways very different from either the food chain or a two-predator food web without rapid prey evolution. When many prey genotypes coexist, chaotic dynamics become likely. The effects of rapid evolution can still be detected by analyzing relationships between prey abundance and predator population growth rates using methods from functional data analysis.

As a contribution to the occurrence of ergot alkaloids in ergot from German rye and triticale, samples from the 2007 and 2008 harvests were analyzed. Twelve alkaloids-six pairs of main alkaloids and their corresponding epimers-were determined in extracts prepared under alkaline conditions by HPLC with fluorescence detection without preceding purification. The total alkaloid content was found to be 0.03-0.18% in ergot from rye (n = 19) and 0.06-0.22% in ergot from triticale (n = 4), respectively. Furthermore, single sclerotia (n = 40) were investigated in terms of alkaloid content and distributional pattern. The main alkaloids in ergot were ergocristine, ergotamine and ergocornine, although the alkaloid composition was highly variable.

Mycobacterium avium-intracellulare (MAI) is a ubiquitous environmental pathogen that causes disseminated infection in immunocompromised patients, such as those with human immunodeficiency virus, interleukin-12 deficiency, or interferon-gamma receptor mutation. Colony morphotypes are associated with MAI pathogenicity. Our previous studies have reported that smooth-transparent (SmT) morphotypes are more virulent and induce less cytokine (interleukin-1beta and tumor necrosis factor-alpha) production by human monocytes than the smooth-domed (SmD) morphotypes. Mitogen-activated protein (MAP) kinases such as extracellular-regulated kinase (ERK) are activated by the phagocytosis of particle antigens in macrophages, and this ERK activation subsequently influences cytokine expression and the control of intracellular pathogen growth. The influence of MAP kinase activation on MAI replication in human monocytes was examined. Peripheral blood monocytes isolated from healthy subjects by Ficoll-Hypaque sedimentation were infected with virulent SmT or avirulent SmD MAI without or with MAP kinase inhibitors. MAP kinase activities were determined by in vitro kinase assay, intracellular MAI growth by CFU assay, and cytokines by enzyme-linked immunosorbent assay. MAI infection induced ERK and p38 activation. Inhibition of ERK by PD98059, but not p38, significantly increased intracellular MAI growth. Tumor necrosis factor-alpha release and interleukin-1beta production in response to MAI were reduced by MAP kinase inhibition. p38 inhibition tended to reduce cytokine production more substantially. These data suggest that ERK activation limits intra-monocytic MAI replication and enhances monocytic cytokine release, whereas p38 activation influences only cytokine release. The effect of MAP kinases on MAI growth might thus be mediated by the modulation of cytokine production.

Mehr als 11Fusarium sambucinum-Isolate wurden aus trockenfaulen Kartoffelknollen isoliert, die zum Zeitpunkt der Probenahme im Januar und Februar 2004 aus verschieden Lagern in Brandenburg und Sachen-Anhalt stammten. Alle Isolate produzierten im faulen Gewebe Diacetoxyscripenol. Zwei Isolate produzierten zusatzlich T2- und HT-2-Toxin. Es traten zwischen den beiden verwendeten Kartoffel-Sorten ‘Sieglinde’ und ‘Berber’ Unterschiede hinsichtlich der Virulenz und der Mykotoxinproduktion auf. Es konnte eine enge Korrelation zwischen der Faulnisauspragung und der Diacetoxyscripenol-Konzentration nachgewiesen werden.

Lymphoseek is a molecular imaging agent specifically designed for sentinel lymph node mapping. We conducted a phase I clinical trial in which Lymphoseek was compared with filtered [(99m)Tc]sulfur colloid (fTcSC) for melanoma sentinel lymph node detection.Twenty-four patients (33-81 years) with melanoma participated in this study. Four groups of six patients received an intradermal administration (.5 mCi) of 1.0, 5.0, or 10.0 nmol of (99m)Tc-labeled Lymphoseek or filtered [(99m)Tc]sulfur colloid. The injection site clearance was monitored by nuclear imaging for 3 hours. Lymph nodes obtained by gamma-guided biopsy (4.0-8.7 hours after injection) were assayed for radioactivity. Clinical chemistry values were monitored (before injection, before surgery, and 4 and 24 hours), and whole-body scans were acquired at 1 and 12 hours after injection.Lymphoseek exhibited a significantly (P.001) faster injection site clearance at all dose levels. The mean Lymphoseek clearance half-time was 2.17 +/- .96 hours (n = 18) compared with 14.7 +/- 6.3 hours for fTcSC (n = 6). The mean sentinel lymph node uptakes of Lymphoseek (.73% +/- .94%) and fTcSC (.85% +/- 1.19%) were statistically equivalent (P = .68). Lymphoseek exhibited a lower mean number of sentinel lymph nodes per basin (1.6) than fTcSC (1.9). No adverse events were observed, nor were any clinically significant alterations in laboratory parameters. Radiation absorbed doses were lower than filtered [(99m)Tc]sulfur colloid.The molecular imaging agent Lymphoseek demonstrated faster injection site clearance and equivalent primary sentinel node uptake when compared with filtered [(99m)Tc]sulfur colloid.

The composition dependence of the average atomic volume, as well as of the enthalpy of formation, was investigated for the palladium-containing binary systems with the 3d metals. The partial atomic volume and the partial molar enthalpy of formation of the 3d metals were determined for the palladium-based solid solutions (Pearson symbol cF4, space group $$Fm\bar 3m$$ , Cu type). The 3d early transition metals (scandium, titanium, and vanadium) as well as the 3d104s2 … 3d104s24p metals (zinc and gallium) show (1) the partial atomic volume for the palladium-based solid solutions smaller than is their atomic volume in the nonbonded state and (2) significantly large (negative) values of the partial molar enthalpy of formation indicating a strong bond energy between atoms of palladium and those of the 3d early transition metals (as well as a strong bond energy between atoms of palladium and zinc or gallium atoms). The 3d late transition metals (and chromium) show (1) the partial atomic volume for the palladium-based solid solutions larger than is their atomic volume in the nonbonded state and (2) low (negative) values of the partial molar enthalpy of formation indicating weak bond energy between atoms of palladium and those of the 3d late transition metals.

Ecological and evolutionary dynamics can occur on similar timescales. However, theoretical predictions of how rapid evolution can affect ecological dynamics are inconclusive and often depend on untested model assumptions. Here we report that rapid prey evolution in response to oscillating predator density affects predator-prey (rotifer-algal) cycles in laboratory microcosms. Our experiments tested explicit predictions from a model for our system that allows prey evolution. We verified the predicted existence of an evolutionary tradeoff between algal competitive ability and defence against consumption, and examined its effects on cycle dynamics by manipulating the evolutionary potential of the prey population. Single-clone algal cultures (lacking genetic variability) produced short cycle periods and typical quarter-period phase lags between prey and predator densities, whereas multi-clonal (genetically variable) algal cultures produced long cycles with prey and predator densities nearly out of phase, exactly as predicted. These results confirm that prey evolution can substantially alter predator-prey dynamics, and therefore that attempts to understand population oscillations in nature cannot neglect potential effects from ongoing rapid evolution.

The composition dependence of the average atomic volume, as well as of the enthalpy of formation, was investigated for the aluminum-containing systems with the 3d transition metals and copper. The partial atomic volume of aluminum and the partial molar enthalpy of aluminum were determined for the transition metal-based solid solutions. Independent of the type of solid-solution structure, the (negative) partial molar enthalpy of aluminum increases and the partial atomic volume of aluminum decreases with increasing filling of the 3d band. The charge transfer and the bonding in solid solutions exhibiting close-packed structures (coordination number (CN)=12) is substantially higher than in solid solutions, based on the bcc structure (CN=8). The s electron of copper, though, reduces the charge transfer and the bonding in the fcc solid-solution Cu(Al) significantly.

The binary system Ti-Al has been reinvestigated in the composition range of 50 to 76 at. pct Al by X-ray diffraction, metallography, electron probe microanalysis (EPMA), and differential thermal analysis (DTA). Heat-treated alloys (600°C to 1300°C) as well as the as-cast alloys were investigated. Seven stable intermetallic phases were observed: TiAl, Ti1−x Al1+x , Ti3Al5, TiAl2, Ti5Al11, TiAl3 (h), and TiAl3 (1); two metastable phases, TiAl2 (m) and TiAl3 (m), were also found. For each of these phases, the homogeneity range and the crystal chemical parameters were determined. The temperatures of the solid-state phase reactions were re-established. On the basis of the experimental results, an improved version of the equilibrium phase diagram has been drawn and critically compared with earlier versions presented in the literature.

Continuing the monitoring ofFusarium toxins in cereals, we investigated 245 samples of wheat, barley, triticale and oats in 1999. 84 samples out of 100 analysed forFusarium could be found to be infected. The most prominentFusarium species detected whereF. avenaceum, F. poae, F. detected whereF. avenaceum, F. poae, F. graminearum, andF. sporotrichoides. The level of mycotoxin contamination of the samples varied depending on their origins and was in general very low in comparison with the result obtained in samples of the previous year. There where only some wheat samples with deoxynivalenol (DON) concentrations beyond existing advisory levels. The average DON concentration of all samples was 0.35 mg/kg with a median of 0.007 mg/kg. 3-Acetyldeoxynivalenol and zearalenone (ZEA) could only be detected at minor concentrations (below 0.1 and 0.05 mg/kg, respectively) in less than 10% of the samples. The analysis of commercial cereal flour reflects this situation. Flour bought in the first quarter of 1999, which was suspected to contain a high portion of the 1998 harvest, was contaminated by DON to a higher extent than those purchased in 2000. The average DON concentration in the flour samples of 1999 and 2000 was 0.35 mg/kg and 0.23 mg/kg, respectively. Although the general mycotoxin level in the 1999 harvest was lower as in 1998 there were some highly contaminated samples that had mainly been grown in fields with either maize or other cereals as previous crop and reduced tillage. The combination of maize as previous crop and non-tillage could be stated as most unsuitable, which promotes enhanced mycotoxin contamination, and should therefore be avoided.

Smallpox represents both the acme of man's efforts to combat infectious diseases and one of his greatest fears. The disease emerged in prehistoric times to spread throughout the world causing blindness and death in millions of people. An acute infection caused by variola virus, one of the Orthopoxviruses, with skin eruption and marked toxemia had an average case fatality rate of 30%. Variola minor, a milder form of the disease, had a case fatality of one percent. Humans are the sole host, and survival confers lifelong immunity. Immunization was practiced since ancient times by inoculation with the variola virus until Jenner's demonstration of the efficacy and safety of vaccination with vaccinia virus. Following an intensive eradication effort by the World Health Organization, the world was declared to be free of smallpox in 1979. The decision to destroy all remaining stocks of variola virus in 1999 has met with some controversy.

We propose a simple approach to approximating the speed of invasion in lattice population models. Approximate critical parameter values for successful invasion are then found by solving for zero wave speed. The approximation is based on describing the occupied region by the ordinary pair approximation, and using quasi-steady-state pair approximations to describe the leading edge of the wave front. We illustrate this idea using the basic contact process on the 1 and 2 dimensional lattice (with and without nearest-neighbor migration), finding very good agreement between the approximation and simulation results. The approximate critical values obtained by our approximation are significantly more accurate than those obtained by the ordinary pair approximation.

The pathophysiologic basis for the exuberant intracellular growth of Mycobacterium avium complex (MAC) in AIDS patients is unclear but may relate to altered expression of modulatory cytokines. Interleukin (IL)-1, IL-6, and TNF-α expression by monocytes from AIDS patients and healthy subjects (HS) stimulated with isogeneic MAC strains (SmT, smooth-transparent, virulent; SmD, smooth-domed, avirulent) was examined. Spontaneous cytokine production was not observed in patients with AIDS. MAC strains induced less IL-1α and IL-1β release in AIDS patients than HS (P < 0.05). The ratio of cell-associated to supernatant IL-1α also was increased in AIDS patients (P = 0.03). IL-1β mRNA expression paralleled protein release in either group of subjects. In both HS and AIDS patients, stimulation with SmD induced more IL-1 and TNF-α release by monocytes compared to SmT. In AIDS patients, SmD also induced greater IL-6 release than SmT (P < 0.01). Alterations in monocyte expression and compartmentalization of the regulatory cytokines IL-1 and IL-6 may enhance bacterial replication and contribute to the patho-genesis of MAC infection in AIDS.

The deoxynivalenol concentrations found in forage maize ranged between 0.24 and 14.29 mg/kg DM (detected by ELISA). When highly contaminated samples were analysed for deoxynivalenol by HPLC or LC-MS the resulting concentrations were in the mean about 50% lower. Furthermore, using LC-MS other type-A and type-B trichothecenes, zearalenone and α-zearalenol were found in these samples. The differences between ELISA and HPLC/LC-MS data for deoxynivalenol are assumed to result from cross-reactions of other trichothecenes with the antibodies used in ELISA and toxin losses from sample purification procedures needed for HPLC and LC-MS analysis.