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Metal pollution is a subject of growing concern as it affects the whole food chain of an ecosystem by bioaccumulation. Growing industrialization and anthropogenic intervention have put tremendous pressure on self-sustaining ecosystems worldwide. Sundarbans mangrove estuary, being a UNESCO World Heritage site, suffers severely from anthropogenic stress, urbanization, ecotourism, overexploitation of natural resources and discharges of industrial as well as municipal waste products. Our study unfolds the extent of metal pollution in the sediment of this estuarine mangrove ecosystem and also investigates the source and distribution of these metals. Extensive samplings were performed during three major seasons, namely pre-monsoon, monsoon, and post-monsoon for two consecutive years at ten sampling stations along the major river networks of the mangrove estuary. Seasonal variations of these metals, physicochemical properties, and soil texture studies were performed to explore the sediment quality of the study area. Positive correlation was observed between the pollutants and siltation. Several environmental indices were investigated to explore the degree of metal pollution which revealed contamination of Cd, Cr, and Pb to cross the permitted safe index in the study area. Pollution load index indicates the spatial as well as seasonal variation of eco toxic metal load along the course of the rivers. Statistical analyses such as principal component analysis and correlation matrix identified different sources for metal contamination. Almost 700 tannery industries are located in the upstream region of the rivers, and several small- and large-scale battery industries seem to be the main possible source for Cd, Cr, and Pb pollution. Analysis of the results indicates the alarming condition of this heritage site. The metal concentrations beyond toxicity thresholds are responsible for gradual deterioration of this estuarine mangrove which may only be protected by developing sustainable management planning.

Microbial synthesis of gold nanoparticles (GNPs) has attracted considerable attention in recent times due to their exceptional capability for the bioremediation of industrial wastes and also for the treatment of wastewater. A bacterial strain Staphylococcus warneri, isolated from the estuarine mangroves of Sundarbans region produced highly stable GNPs by reducing hydrogen auric chloride (HAucl4) salt using intracellular protein extract. The nanoparticles were characterized utilizing ultraviolet-visible spectrophotometry, transmission electron microscopy, scanning electron microscopy, atomic force microscopy, X-ray diffraction, and surface enhanced Raman scattering. Highly dispersed, spherically shaped GNPs varied around 15–25 nm in size and were highly crystalline with face-centered cubic structures. Recyclable catalytic activity of as-synthesized GNPs was evidenced by complete degradation of nitro aromatic pollutants like 2-nitroaniline, 4-nitroaniline, 2-nitrophenol and 4-nitrophenol. Our GNPs show excellent and efficient catalytic activity with significantly high rate constant (10−1 order) and high turnover frequency (103 order) in recyclable manner up to three times. To our knowledge, this is the first report of Staphylococcus warneri in the production of gold nanoparticles. This green technology for bioremediation of toxic nitro aromatic pollutants is safe and economically beneficial to challenge the development and sustainability issue.

Media is abuzz with advertisements of multitude of antibacterial products ranging from toothpastes, toilet soaps, and handwashes to disinfectants and cosmetics. While, almost every manufacturer claims that their product has 100% efficiency in eliminating microbes, the truth really is questionable. On 2 September 2016, the Food and Drug Administration of USA, banned 19 compounds used in antibacterial products. These ingredients, as per FDA experts, are not effective as antibacterials as they are claimed to be, and few of them even have adverse effects on humans. India is the largest consumer of such antibacterial products, but is yet to take any regulatory measures against these products. This article focus on the need of creating large scale public awareness about these products.

ErbB-3 binding protein 1 (Ebp1) is a host protein which binds ErbB-3 receptor to induce signalling events for cell growth regulation. In addition, Ebp1 also interacts with ribonucleoprotein complexes. In recent times, Ebp1 was found to play an antagonistic role in viral infections caused by Influenza and Rinderpest viruses. In our present work we have tried to understand the role of Ebp1 in Chandipura virus (CHPV) infection. We have observed an induction in Ebp1 expression upon CHPV infection similar to other viruses. However, unlike other viruses an overexpressed Ebp1 only reduces viral protein expression, but does not affect its progeny formation. Additionally, this effect is being carried out in an indirect manner, as there is no interaction between Ebp1 and viral proteins. This is despite Ebp1's presence in viral inclusion bodies.

Recent studies show that nearly 40% of the 118 elements that make up everything – from the chemist’s arsenal to a variety of consumer products, are facing depleting supplies. Based on this data, in 2011, Mike Pitts and his colleagues at the Chemistry Innovation Knowledge Transfer Network developed a new type of periodic table. Their analysis revealed that 44 elements are facing limited supply, or are under the threat of becoming scarce or inaccessible. These includes all of the rare earth elements, as well as zinc, gallium, germanium, helium, silver, and even phosphorus. The Royal Society of Chemistry has also published a color-coded periodic table, indicating the ‘endangered elements’. The objective of this article is to draw attention to this issue, and create awareness about the scientific, social and economic impacts of this problem.

Environmental degradation due to petroleum contamination is a widespread phenomenon and can cause irreparable damage to the ecosystem if not contained. Microbial bioremediation has been established as an ecologically and economically viable method for the restoration of environments afflicted with xenobiotic and anthropogenic pollution. Effective execution of bioremediation strategies however, require a thorough understanding of the resident microbial community structure and function along with critical environmental factors. Recent innovative advances such as massively parallel sequencing, coupled with the development of robust bioinformatics tools have provided critical insights into the process of microbial bioremediation in the environment through elucidation of microbial community structures in uncontaminated and contaminated and/or bioaugmented systems with unprecedented efficiency and reproducibility. Aided by next-generation sequencing applications like metagenomics, metatranscriptomics and metagenomic shotgun sequencing, microbiologists have been able to investigate microbial responses to oil pollution with unparalleled completeness, even from extreme environments. The elucidation of the contribution of non-cultivable but viable microbes in oil contaminated sites have furnished us with essential information about the complex microbial associations and interdependencies that are required to facilitate effective remediation of contaminated environments. The current review focuses on microbial responses to oil contamination in various key environments unraveled through the use of NGS technologies, the characteristic features of such responses, and identification of critical factors necessary to facilitate efficient and systemic bioremediation of these polluted environments.

Tumor relapse in triple negative breast cancer patients has been implicated to chemoresistant cancer stem cells (CSCs), which under favorable conditions culminate in tumor re-formation and metastasis. Hence, eradication of CSCs during systemic chemotherapy is imperative. CSCs were sorted using immuno-phenotyping and aldefluor assay. Gene expression profiling of normal breast stem cells and breast CSCs from chemo-treated patients were carried out. Silencing SOX2 was achieved by siRNA method. Mammosphere culture and wound healing assays were carried out to assess efficacy of CSCs. Microarray analysis revealed elevated expression of SOX2, ABCG2 and TWIST1, unraveling an intertwined pluripotency-chemoresistance-EMT axis. Although paclitaxel treatment led to temporary arrest of cell migration, invasiveness resumed after drug removal. The ‘twist in the tale’ was a consistently elevated expression of TWIST1, substantiating that TWIST1 can also promote stemness and chemoresistance in tumors; hence, its eradication was imperative. Silencing SOX2 increased chemo-sensitivity and diminished sphere formation, and led to TWIST1 down regulation. This study eventually established that SOX2 silencing of CSCs along with paclitaxel treatment reduced SOX2-ABCG2-TWIST1 expression, disrupted sphere forming capacity and also reduced invasiveness by retaining epithelial-like properties of the cells, thereby suggesting a more comprehensive therapy for TNBC patients in future.

The influence of temporal and spatial variations on the microbial community composition was assessed in the unique coastal mangrove of Sundarbans using parallel 16S rRNA gene pyrosequencing. The total sediment DNA was extracted and subjected to the 16S rRNA gene pyrosequencing, which resulted in 117 Mbp of data from three experimental stations. The taxonomic analysis of the pyrosequencing data was grouped into 24 different phyla. In general, Proteobacteria were the most dominant phyla with predominance of Deltaproteobacteria, Alphaproteobacteria, and Gammaproteobacteria within the sediments. Besides Proteobacteria, there are a number of sequences affiliated to the following major phyla detected in all three stations in both the sampling seasons: Actinobacteria, Bacteroidetes, Planctomycetes, Acidobacteria, Chloroflexi, Cyanobacteria, Nitrospira, and Firmicutes. Further taxonomic analysis revealed abundance of micro-aerophilic and anaerobic microbial population in the surface layers, suggesting anaerobic nature of the sediments in Sundarbans. The results of this study add valuable information about the composition of microbial communities in Sundarbans mangrove and shed light on possible transformations promoted by bacterial communities in the sediments.

After 24 h of incubation with only purified pectate lyase isolated from Bacillus pumilus DKS1 (EF467045), the weight loss of the ramie fibre was found to be 25%. To know the catalytic residue of pectate lyase the pel gene encoding a pectate lyase from the strain Bacillus pumilus DKS1 was cloned in E. coli XL1Blue and expressed in E. coli BL21 (DE3) pLysS. The pel gene was sequenced and showed 1032 bp length. After purification using CM-Sepharose the enzyme showed molecular weight of 35 kDa and maximal enzymatic activity was observed at 60°C and a pH range of 8.5-9.0. Both Ca²(+) and Mn²(+) ions were required for activity on Na-pectate salt substrates, while the enzyme was strongly inhibited by Zn²(+) and EDTA. The deduced nucleotide sequence of the DKS1 pectate lyase (EU652988) showed 90% homology to pectate lyases from Bacillus pumilus SAFR-032 (CP000813). The 3D structure as well as the catalytic residues was predicted using EasyPred software and Catalytic Site Atlas (CSA), respectively. Site directed mutagenesis confirmed that arginine is an essential catalytic residue of DKS1 pectate lyase.

Human placental extracts are known to help wound healing. Rapid migration of neutrophils to the wound site is a prerequisite to the wound healing process. Gel filtration analysis of heat-treated placental extract gave the initial cue to the small nature of the migration promoting factor of the extract. HPLC analysis of the extract revealed glutamate to be the predominant free amino acid. Our studies show that glutamate at an optimum concentration of 8 microM induced phenotypic neutrophil chemotaxis, as seen in the time lapse and transwell assays. Glutamate was also found to induce chemokinesis of the neutrophil, though the stimulation of chemotaxis was more pronounced. The glutamate induced chemotaxis was accompanied by polarization of the actin cytoskeleton, and by polymerization of F-actin. These data indicate that glutamate has a strong chemotactic functionality in the neutrophil, which could be of interest both therapeutically and in further investigation of the molecular basis of chemotaxis.

A study was conducted to determine the effect of metals on soil microbial biomass and activities in landfill soils as well as normal background soil. The microbial biomass and activities were consistently higher in the landfill soils than in the background soil. Significant positive correlations existed between the microbial parameters and soil organic carbon. The landfill soils contained higher concentrations of metals (iron, manganese, copper, cadmium, lead and zinc) than did the background soil. Microbial parameters were negatively correlated with the metals, with inhibition increasing with the bioavailability of the metals. It is suggested that the metals affected microbial biomass and activities by behaving synergistically or additively with each other. Although the landfill soils had higher microbial biomass and activities than the background soil, due to higher organic matter content, the ratios of microbial parameters/organic carbon indicated that inhibition of microbial growth and activities had occurred due to metal stress.

The phosphoprotein gene of vesicular stomatitis virus, a Rhabdovirus, has been inserted into bacterial expression plasmids containing the Escherichia coli tac promoter and ribosome binding site (RBS). A low level of expression of the protein was detected. Sequence analysis showed the presence of 15 nucleotides in the spacer region i.e., between the Shine-Dalgarno sequence and ATG. Alteration of the distance and the sequence in the spacer region by oligonucleotide-directed mutagenesis revealed a correlation among the expression levels, accessibility of the RBS and requirement for a minimum spacing of at least 7 nucleotides between the Shine-Dalgarno sequence and ATG for optimal gene expression.

The nucleocaPsid Protein (49 Kd) of vesicular stomatitis virus is tightly bound to the genome rendering the latter transcriPtionally comPetent. Controlled digestion with chymotryPsin removed a 12 Kd PePtide from the comPlex. The resulting comPlex failed to serve as temPlate for genome transcriPtionin vitro when the Polymerase comPonents L and NS Proteins were added. A temPlate-associated Protein kinase activity was also lost uPon chymotryPsin treatment. However, the cleaved nucleocaPsid Protein (37 Kd) was still caPable of binding tightly with the genome temPlate and retained the ePitoPe recognized by a monoclonal antibody. These results suggest that the nucleocaPsid Protein Possesses seParate domains that mediate binding to Polymerase comPlex and maintain the structural integrity of the template.

Monte-Carlo results on the velocity-field characteristics, ac diffusion-constant and thermal-noise voltages are presented for In0.765Ga0.235As0.5P0.5 at 300K. Recently available values of physical constants have been used in the calculations. The values of diffusion constants are close to those of InP but the thermal noise voltages are found to increase faster with the field. The peak velocity is 1.9 × 107 cm/s and the threshold field for negative differential mobility is about 6 kV/cm.