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Of the 52 Sites of Special Scientific Interest in the Outer Hebrides of Scotland, 12 are separated from the main islands at high tide. Within these 12 sites, only one of which (St Kilda) has any human inhabitants, there are a further eight islands or groups of islands more than 2 km apart, so that within the Outer Hebrides, there are - for practical purposes - 20 separate offshore designated sites requiring survey, monitoring and management input. This presents challenges of resource allocation and logistics for the small team of conservation staff based within the two Outer Hebrides offices of Scottish Natural Heritage, Scotland’s statutory nature conservation agency. There are also challenges for the other agencies and managers involved in these sites, which in some cases allow the pooling of resources, but in others, lead to new sets of problems with conservation implications. These problems are discussed and reviewed with regard to future management and the obligations placed on Scottish Natural Heritage.