Search

This study investigated the relationship between phytoplankton biomass and taxonomic composition and hydrographic variables in the Northeastern Tropical Pacific for June 2015, March 2016, and September 2016. Hydrographic data were measured between surface and 100 m; samples were collected at the surface and the deep chlorophyll maximum (DCM) along one or two transects. Pigments were quantified by high-performance liquid chromatography; the CHEMTAX software was used to determine the relative contribution to chlorophyll a of the main taxonomic groups. Our results show that the studied region is characterized by a stable vertical distribution of phytoplankton biomass regardless of the season (winter, spring or summer). A subsurface maximum (DCM) is always observed close to the bottom of the mixed layer where there is a higher abundance of larger groups (diatoms and Prymnesiophytes) while at the surface community, composition was generally dominated by picoplankton (Cyanobacteria and Prochlorococcus), and occasionally Prymnesiophytes. However, during the spring cruise (June 2015), affected by the 2015–2016 El Nino, phytoplankton biomass at the DCM markedly decreased along with an increase in the abundance of Chlorophytes. On the other hand, in September 2016, there was an unexpected increase in phytoplankton biomass at the DCM, although stratification was strong, and Prymnesiophytes comprised 60% of the community at the surface. The evaluation of nutrient and light will be necessary in future studies to determine their role in this temporal variability. Finally, chemotaxonomy (HPLC/CHEMTAX) proved to be a valuable tool for describing phytoplankton distribution at group level in this region and its relationship with physical processes.

Xanthomonas citri pv. citri (X. citri pv. citri) is the causal agent of Asiatic citrus canker and infects economically important citrus crops. X. citri pv. citri contains one type VI secretion system (T6SS) required for resistance to predation by the soil amoeba Dictyostelium discoideum and induced by the ECF sigma factor EcfK in the presence of amoeba. In this work, we describe the analysis of T6SS gene expression during interaction with host plants. We show that T6SS genes and the cognate positive regulator ecfK are upregulated during growth in the plant surface (epiphytic) and maintain low expression levels during growth inside plant mesophyll. In addition, expression of the virulence-associated T3SS is also induced during epiphytic growth and shows a temporal induction pattern during growth inside plant leaves. The T6SS is not required for adhesion to leaf surface and biofilm formation during the first stages of plant colonization nor for killing of yeasts cells. Since the phyllosphere is colonized by eukaryotic predators of bacteria, induction of the X. citri pv. citri anti-amoeba T6SS during epiphytic growth suggests the presence of an environmental signal that triggers the resistance phenotype.

Staphylococcus epidermidis is a Gram-positive saprophytic bacterium found in the microaerobic/anaerobic layers of the skin that becomes a health hazard when it is carried across the skin through punctures or wounds. Pathogenicity is enhanced by the ability of S. epidermidis to associate into biofilms, where it avoids attacks by the host and antibiotics. To test the effect of oxygen on metabolism and biofilm generation, cells were cultured at different oxygen concentrations ([O2]). As [O2] decreased, S. epidermidis metabolism went from respiratory to fermentative. Remarkably, the rate of growth decreased at low [O2] while a high concentration of ATP ([ATP]) was kept. Under hypoxic conditions bacteria associated into biofilms. Aerobic activity sensitized the cell to hydrogen peroxide-mediated damage. In the presence of metabolic inhibitors, biofilm formation decreased. It is suggested that at low [O2] S. epidermidis limits its growth and develops the ability to form biofilms.

Ubiquinone derivatives modulate the mammalian mitochondrial Permeability Transition Pore (PTP). Yeast mitochondria harbor a similar structure: the respiration- and ATP-induced Saccharomyces cerevisiae Mitochondrial Unselective Channel ( Sc MUC). Here we show that decylubiquinone, a well-characterized inhibitor of the PTP, suppresses Sc MUC opening in diverse strains and independently of respiratory chain modulation or redox-state. We also found that naturally occurring derivatives such as hexaprenyl and decaprenyl ubiquinones lacked effects on the Sc MUC. The PTP-inactive ubiquinone 5 (Ub5) promoted the Sc MUC-independent activation of the respiratory chain in most strains tested. In an industrial strain however, Ub5 blocked the protection elicited by dUb. The results indicate the presence of a ubiquinone-binding site in the Sc MUC.

First results of a multi-disciplinary hyporheic monitoring study are presented from the newly established Steinlach Test Site in Southern Germany. The site is located in a bend of the River Steinlach (mean discharge of 1.8 m³/s) underlain by an alluvial sandy gravel aquifer connected to the stream. The overall objective is a better understanding of hyporheic exchange processes at the site and their interrelations with microbial community dynamics and biochemical reactions at the stream–groundwater interface. The present paper focuses on the distribution of lateral hyporheic exchange fluxes and their associated travel times at the Steinlach Test Site. Water level dynamics in various piezometers correspond to the different domains of hydraulic conductivity in the shallow aquifer and confirms hyporheic exchange of infiltrated stream water across the test site. Hydrochemical compositions as well as increased damping of continuous time series of electrical conductivity (EC) and temperature at the respective piezometers confirmed the inferred distribution of hyporheic flowpaths. Mean travel times ranging from 0.5 days close to the stream to more than 8 days in the upstream part of the test site could be estimated from deconvolution of EC and δ18O–H2O data. The travel times agree well with the presumed flowpaths. Mg/Ca ratios as well as model fits to the EC and δ18O data indicate the presence of an additional water component in the western part of the test site which most likely consists of hillslope water or groundwater. Based on the mean travel times, the total lateral hyporheic exchange flux at the site was estimated to be of the order of 1–2 L/s.