6 results on '"Ali M. Somily"'
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2. Are mosque carpets’ reservoirs for fungi causing superficial foot mycosis? A cross-sectional study in Riyadh, Saudi Arabia
- Author
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Amal Balbeesi, Fahad Alsaif, Ghadah Alhammad, Afnan Almutawa, Ali M. Somily, and Lama Altawil
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Veterinary medicine ,Cross-sectional study ,Health, Toxicology and Mutagenesis ,media_common.quotation_subject ,education ,Saudi Arabia ,010501 environmental sciences ,01 natural sciences ,Foot Diseases ,Mycosis Fungoides ,Hygiene ,Floors and Floorcoverings ,medicine ,Humans ,Environmental Chemistry ,Mycosis ,0105 earth and related environmental sciences ,media_common ,biology ,Fungi ,General Medicine ,Bipolaris ,biology.organism_classification ,Alternaria ,medicine.disease ,Pollution ,Cross-Sectional Studies ,Geography ,Curvularia ,Foot (unit) ,Cladosporium - Abstract
The possibility of superficial foot mycoses to spread through contaminated mosque carpets between worshipers imposes a great health burden and is never addressed in Riyadh, SA. We aimed to assess the prevalence of fungal infections, especially human dermatophytosis acquired from mosque carpets, in five different regions of Riyadh, Saudi Arabia and establish a means of contamination control. A cross-sectional study of 100 mosques in Riyadh, Saudi Arabia, was conducted, using a multistage random cluster sampling technique. The study included mosques that had an ablution area and regularly hosted five prayers a day. Sterile swabs were used for sampling, and the samples were transported to the laboratory for culture and analysis using a micro-scan system. A total of 199 (65%) samples contained several fungal species. Rhodotorula (74%), Cladosporium (47%), Bipolaris (46.6%), other yeasts (43.7%), Alternaria (40%), dematiaceous molds (34%), Curvularia (32.4%), and Candida (31%) were the most frequently isolated species. Species belonging to several other genera were also detected. This study revealed a relatively high prevalence of fungal organisms in mosque carpets in Riyadh, suggesting the need for implementing new strategies and laws to increase the level of hygiene awareness among worshipers and mosque caretakers to limit the spread of foot fungal infections.
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- 2020
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3. Characterisation of S. aureus/MRSA CC1153 and review of mobile genetic elements carrying the fusidic acid resistance gene fusC
- Author
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Mayada Gwida, Annett Reissig, Ralf Ehricht, Abiola Senok, Sascha D. Braun, Samar S. Boswihi, Rania Nassar, Helmut Hotzel, Maged El-Ashker, Edet E. Udo, Ali M. Somily, Ines Engelmann, Antje Ruppelt-Lorz, Elke Müller, M. Armengol-Porta, Stefan Monecke, Michèle Bes, and Darius Gawlik
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Methicillin-Resistant Staphylococcus aureus ,0301 basic medicine ,Lineage (genetic) ,Molecular biology ,Science ,Fusidic acid ,030106 microbiology ,Diseases ,Biology ,Microbiology ,Article ,Middle East ,03 medical and health sciences ,Bacterial Proteins ,Drug Resistance, Bacterial ,Recombinase ,medicine ,Animals ,Humans ,Gene ,Phylogeny ,Oligonucleotide Array Sequence Analysis ,Genetics ,Multidisciplinary ,Whole Genome Sequencing ,Molecular epidemiology ,SCCmec ,Sequence Analysis, DNA ,biochemical phenomena, metabolism, and nutrition ,bacterial infections and mycoses ,Interspersed Repetitive Sequences ,Nanopore Sequencing ,B vitamins ,030104 developmental biology ,Medicine ,Cattle ,Mobile genetic elements ,Fusidic Acid ,medicine.drug - Abstract
While many data on molecular epidemiology of MRSA are available for North America, Western Europe and Australia, much less is known on the distribution of MRSA clones elsewhere. Here, we describe a poorly known lineage from the Middle East, CC1153, to which several strains from humans and livestock belong. Isolates were characterised using DNA microarrays and one isolate from the United Arab Emirates was sequenced using Nanopore technology. CC1153 carries agr II and capsule type 5 genes. Enterotoxin genes are rarely present, but PVL is common. Associated spa types include t504, t903 and t13507. PVL-positive CC1153-MSSA were found in Egyptian cattle suffering from mastitis. It was also identified among humans with skin and soft tissue infections in Saudi Arabia, France and Germany. CC1153-MRSA were mainly observed in Arabian Gulf countries. Some isolates presented with a previously unknown SCCmec/SCCfus chimeric element in which a mec B complex was found together with the fusidic acid resistance gene fusC and accompanying genes including ccrA/B-1 recombinase genes. Other isolates carried SCCmec V elements that usually also included fusC. Distribution and emergence of CC1153-MRSA show the necessity of molecular characterization of MRSA that are resistant to fusidic acid. These strains pose a public health threat as they combine resistance to beta-lactams used in hospitals as well as to fusidic acid used in the community. Because of the high prevalence of fusC-positive MRSA in the Middle East, sequences and descriptions of SCC elements harbouring fusC and/or mecA are reviewed. When comparing fusC and its surrounding regions from the CC1153 strain to available published sequences, it became obvious that there are four fusC alleles and five distinct types of fusC gene complexes reminiscent to the mec complexes in SCCmec elements. Likewise, they are associated with different sets of ccrA/B recombinase genes and additional payload that might include entire mec complexes or SCCmec elements.
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- 2021
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4. Hamstring autografts are associated with a high rate of contamination in anterior cruciate ligament reconstruction
- Author
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Saud M. Alfayez, Abdulaziz Z. Alomar, and Ali M. Somily
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Staphylococcus aureus ,medicine.medical_specialty ,Anterior cruciate ligament reconstruction ,medicine.medical_treatment ,Anterior cruciate ligament ,Saudi Arabia ,Transplantation, Autologous ,Intraoperative Period ,03 medical and health sciences ,0302 clinical medicine ,Staphylococcus epidermidis ,Humans ,Surgical Wound Infection ,Medicine ,Orthopedics and Sports Medicine ,Fixation (histology) ,030222 orthopedics ,Anterior Cruciate Ligament Reconstruction ,biology ,business.industry ,Anterior Cruciate Ligament Injuries ,Incidence ,Hamstring Tendons ,Clinical course ,030229 sport sciences ,Staphylococcal Infections ,Contamination ,biology.organism_classification ,Surgery ,medicine.anatomical_structure ,Orthopedic surgery ,Equipment Contamination ,business ,Hamstring ,Follow-Up Studies - Abstract
To quantitatively evaluate the rate, type, and level of contamination of anterior cruciate ligament (ACL) hamstring autografts after harvesting and preparation or dropping onto the operating room (OR) floor. Two hamstring autograft specimens were prospectively retrieved from each graft in a consecutive series of 50 patients undergoing primary isolated ACL reconstruction (100 specimens total). One specimen was retrieved immediately after harvesting and dropped onto the OR floor (dropped group). The other was retrieved just after graft implantation and before fixation (control group). Each specimen was incubated for aerobic and anaerobic growth, and the number of colony-forming units (CFU)/g was measured. Patients’ clinical course was monitored for signs of surgical site infection (SSI). The control and dropped groups had positive culture rates of 11/50 (22%) and 16/50 (32%), respectively, with no significant difference between groups (n.s.). The most common organism in the control group was Staphylococcus epidermidis (45.5%) followed by S. aureus (36.4%). In the dropped group, the most common organism was S. epidermidis (31.3%) followed by Bacillus species (25%). The median (range) CFU/g among positive specimens in the dropped and control groups was 65 (8–150) and 10 (2–60), respectively (P = 0.0003). No patient developed postoperative SSI. Intraoperative hamstring autograft contamination rates were high. Hence, routine prophylactic decontamination of all hamstring autografts after harvesting and preparation and before implantation is recommended. Controlled laboratory study.
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- 2017
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5. Outcomes from a Canadian Public Health Prenatal Screening Program for Hepatitis B
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Sabrina Plitt, Ali M. Somily, and Ameeta E. Singh
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Hepatitis B virus ,medicine.medical_specialty ,business.industry ,Transmission (medicine) ,Public health ,Public Health, Environmental and Occupational Health ,virus diseases ,Viral hepatitis b ,General Medicine ,Prenatal care ,Hepatitis B ,medicine.disease_cause ,medicine.disease ,digestive system diseases ,Prenatal screening ,Family medicine ,medicine ,Viral disease ,business - Abstract
Background Without appropriate prophylaxis, the rate of vertical transmission of hepatitis B virus (HBV) can be as high as 95%. Alberta’s provincial prenatal program screens all pregnant women for HBV, and provides prophylaxis to infants born to HBV-infected women. Canadian data on the outcomes of such programs are limited.
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- 2007
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6. Introducing integrated laboratory classes in a PBL curriculum: impact on student’s learning and satisfaction
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Muslim M. Alsaadi, Rana Hasanato, Ali M. Somily, Samy A. Azer, and Sami A Al-Nassar
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Medical education ,Impact on learning ,Medical curriculum ,Educational measurement ,Integrated laboratory classes ,Laboratory Procedure ,education ,Saudi Arabia ,Biochemistry ,Microbiology ,Education ,Medical Laboratory Science ,Pathology ,Humans ,Medicine ,Students’ learning ,Curriculum ,Laboratory procedures ,Medicine(all) ,Education, Medical ,business.industry ,Problem-Based Learning ,General Medicine ,Class (biology) ,Problem-based learning ,Needs assessment ,Applying knowledge ,Educational Measurement ,business ,Needs Assessment ,Research Article - Abstract
Background With the introduction of integrated problem-based learning (PBL) program in the medical curriculum, there is a need to create laboratory classes that suit students’ learning needs and the changes introduced to the curriculum. This paper outlines the development and implementation of four integrated laboratory classes (ILCs) at King Saud University College of Medicine. It also examines whether core concepts addressed in these classes were learned and retained and how the students perceived the ILCs. Methods ILCs are based on enhancing enquiry-based learning, and encouraging students to work on tasks in small groups (apply and integrate knowledge from biochemistry, pathology and microbiology) and conduct a laboratory procedure (practical part). In two of these ILCs, a pretest comprising 15 multiple-choice questions were administrated at the start of the class and an identical posttest was administrated at the end of these classes. Performance of the students in the Objective Structured Practical Examination (OSPE) at the end of the blocks was also evaluated. Students’ perceptions were evaluated using a questionnaire completed at the end of each class. Results A total of 247, 252, 238, and 244 students participated in practical classes covering cerebrospinal fluid infection, small intestine, liver function tests and adrenal gland function, respectively. Students got higher scores in posttests compared to pre-test scores in two classes (12.68 ± 2.03 vs 6.58 ± 3.39 and 13.02 ± 2.03 vs 7.43 ± 2.68, respectively). Paired t-test showed that the difference was significant (P
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- 2013
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