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Coprological studies on the prevalence of gastrointestinal helminth (GI) parasites in domestic ruminants from Srikakulam district of Andhra Pradesh, India, were carried out for a period of one year from January 2019 to December 2019. Fecal examination was done using direct smear, sedimentation and floatation methods. Altogether 3527 fecal samples were examined including 595 from cows, 485 from buffaloes, 1342 from sheep and 1105 from goat. Out of 3527 fecal samples examined, 1084 were found to be positive with three groups of gastrointestinal parasites (GI) showing an overall prevalence of 30.7%. Maximum infection was noted with nematodes (39.1%) and trematodes (37.3%), least infection was noted with cestodes (3.5%) and mixed infections were found to be moderate (20.01%). Host wise prevalence of parasitic infection has shown highest in the case of cattle recording 43.03%, followed by 40.8% in buffaloes, 29.4% in sheep, and 21.4% in goats. Total six varieties of parasites were recorded, the predominant being Haemonchus (Strongyle group) (29.25%), followed by Paramphistomum (25.5%), Fasciola (11.9%), Strongyloides (7.6%), Moniezia (3.5%) and Trichuris (2.2%). Season wise data on prevalence showed, high rate of infection in summer season (32.0%) when compared to winter (30.2%) and rainy (29.9%) seasons. Further studies are needed to design a rational for sustainable management of GI parasite infections in domestic animals of local regions. [ABSTRACT FROM AUTHOR]

The Siberian flying squirrel population is experiencing a continuous decline in Estonia and Finland. Hence, the flying squirrel is listed in Annexes II and IV of the EU Habitat directive and is regarded as a priority species for protection by the European Community. So far, only a limited number of genetic studies have been conducted on this species—all using invasively collected tissue samples and most focusing on the Finnish population only. Our aim was to describe the genetic diversity of the Estonian flying squirrel population and its relatedness to the nearest populations from Finland and Karelia by using, for the first time, non-invasively collected faecal samples. Based on mitochondrial markers' analysis, the Estonian population appeared more homogenous in comparison with the other two populations. Mitochondrial markers did not reveal essential genetic dissimilarities between Estonian, Finnish, and Karelian populations as they all shared the same mitochondrial haplotypes. Combined data from both mitochondrial and microsatellite markers indicated that the flying squirrel population in Estonia is genetically less diverse compared with the other populations. Finally, signs of inbreeding and heterozygote deficiency were detected in the Estonian flying squirrel population. [ABSTRACT FROM AUTHOR]

Genetic sampling from faeces is a useful method for obtaining DNA samples non-invasively. The quantity and quality of DNA isolated from faecal samples is, however, an important factor affecting the success of downstream analyses. Commercial DNA isolation kits offer an efficient and convenient means for recovering DNA, but the kit methodology can influence the quantity and quality of DNA obtained. Comparisons of kit performance for the isolation of DNA from non-invasive sources for ecological studies based on genetic analysis are uncommon in the literature. This study compared the quantity and quality of DNA isolated from surface washings of fresh koala (Phascolarctos cinereus) faecal pellets (scats) using four commercial DNA isolation kits: Axygen® AxyPrep™ MAG Soil, Stool, and Water DNA Kit (AX), Bioline ISOLATE Fecal DNA Kit (BL), Qiagen QIAamp® Fast DNA Stool Mini Kit (QFS), and Qiagen QIAamp® DNA Stool Mini Kit (QS). DNA quantitation, standard PCR and electrophoresis, real time PCR and replicate genotyping using capillary electrophoresis were used to compare the performance of resultant DNA isolates. The performance of DNA isolated from koala scats varied substantially with the DNA kit utilised. All kits provided accurate genotypes but with differing amounts of missing data. Overall, kit AX performed best, providing DNA isolates of higher quantity and quality compared to kit QS, which has previously been thoroughly assessed for genotyping reliability using DNA from koala scats. Given the high variability noted, assessing kit performance is an important way to maximise data quality from non-invasively sourced DNA. [ABSTRACT FROM AUTHOR]

Ancylostoma caninum, a blood feeding nematode parasite (Family: Ancylostomatidae, Superfamily: Ancylostomatoidea) can cause anaemia, dark reddish-brown to black haemorrhagic diarrhoea, dehydration, wasting and deaths due to heavy blood loss. Adult hook worm parasites recovered from the intestine of a stray dog at the time of necropsy were identified as A. caninum based on morphological characters and morphometric observations involving scanning electron microscopy (SEM). Different developmental stages of hookworm eggs viz. 8 cell stage, morula, gastrula and vermiform were observed during the culture process of faecal sample. High quality SEM photographs showed teeth of dimensions 52.5, 42.3 and 23.5 μm on one side and 55.4, 43.8 and 21.0 μm on the other side along with the presence of characteristic transverse cuticular striations on body surface of A. caninum parasites. [ABSTRACT FROM AUTHOR]

A case study of strategies for use of suiformes conservation DNA utilization. Topics discussed include evolution and sustainable management of specific wildlife species, genomic DNA extraction from muscular tissue, and using innovative MDA methods to amplify human DNA from various sources, including blood.

Pathogenic diseases may threaten the viability of wild animal populations, especially when already vulnerable. The mitigation of risks associated with pathogenic infections in populations is an important factor in conservation strategies. Koalas are of conservation concern across the north of their range and are affected by two main pathogens; Chlamydia pecorum and the koala retrovirus (KoRV). This study tested whether DNA from C. pecorum and KoRV could be detected in genetic material isolated from koala scats. Detection of C. pecorum in scat isolated DNA samples was compared with results obtained from urogenital swabs collected from the same individuals as part of an independent study. The ability to detect KoRV in scats from both northern and southern regions of the koala's range was also assessed. There was a high level of concordance (5/6) between the detection of C. pecorum in DNA isolated from scats and urogenital swabs from the same individual. In positive samples, C. pecorum ompA genotypes were identical between DNA from scats and urogenital swabs in two out of three cases. In samples from the south of the koala's range, KoRV copy number was higher in DNA isolated from scats compared to DNA isolated from ear tissue, potentially indicating the detection of horizontally acquired infections. Our results demonstrate the ability to detect C. pecorum and KoRV in DNA isolated from koala scats. This method will be useful for studying the prevalence, transmission and impact of these pathogens in wild populations which may subsequently inform conservation management strategies. [ABSTRACT FROM AUTHOR]

The prevalence of gastrointestinal parasites and risk factors for shedding of Toxocara eggs were determined for 916 Dutch household dogs older than 6 months. Additionally, the owners answered a questionnaire about their dogs and their attitude towards routine deworming was assessed. Faecal samples were examined using the centrifugal sedimentation flotation method. The overall prevalence of dogs shedding Toxocara eggs was 4.6 %. Multivariable logistic regression analysis revealed that the risk for 1-7-year-old dogs to shed Toxocara eggs was significantly lower (OR 0.38) than that of 6-12-month-old dogs. Compared to dogs walking ≤20 % of the time off-leash, those ranging freely 50-80 % and 80-100 % of the time had a significantly higher risk (OR 10.49 and 13.52, respectively) of shedding Toxocara eggs. Other risk factors were coprophagy (OR 2.44) and recently being kenneled (OR 2.76). Although the applied deworming frequency was not significantly associated with shedding Toxocara eggs, there was a trend towards no shedding in dogs under strict supervision that were dewormed 3-4 times a year. Most dog owners (68 %) recognized 'dog's health' as the main reason for deworming. Only 16 % of dogs were dewormed four times a year. It was concluded that the prevalence of Toxocara egg-shedding household dogs is almost unchanged over recent years and that the knowledge of owners is insufficient to expect sound decisions on routine deworming. [ABSTRACT FROM AUTHOR]

Sampling methods that allow DNA collection without the physical handling of animals are popular in conservation genetics, but DNA isolated from faecal samples may be degraded, potentially leading to erroneous microsatellite genotyping results. We collected baboon faecal samples from fresh to 1-week post-defecation in a controlled sampling environment and preserved these using three storage techniques. After DNA isolation and quantification, the samples were genotyped at eight microsatellite loci. Quantitatively, DNA yield was highest when using silica as storage medium. However, microsatellite amplification from samples stored in 95% ETOH were most successful, with 100% success for fresh samples and dropping only marginally to 87.5% of loci for samples collected after 1 week. This disparity between quantitative and qualitative results suggests that total DNA concentrations do not necessarily provide a reliable indication of the amount of target DNA present in a DNA isolate. Our results nevertheless confirm that microsatellite fragments can successfully be amplified from faecal samples up to 1 week post-defecation, with careful selection of storage protocols and loci. [ABSTRACT FROM AUTHOR]

Living in complex social systems requires perceptual and cognitive capacities for the recognition of group membership and individual competitors. Olfaction is one means by which this can be achieved. Many animals can identify individual proteins in urine, skin secretions, or saliva by scent. Additionally, marking behaviour in several mammals and especially in horses indicates the importance of sniffing conspecifics' faeces for olfactory recognition. To test this hypothesis, we conducted two separate experiments: Experiment 1 addressed the question of whether horses can recognise the group membership of other horses by sniffing their faeces. The horses were presented with four faecal samples: (1) their own, (2) those of other members of their own group, (3) those of unfamiliar mares, and (4) those of unfamiliar geldings. Experiment two was designed to assess whether horses can identify the group member from whom a faecal sample came. Here, we presented two groups of horses with faecal samples from their group mates in random distribution. As controls, soil heaps and sheep faecal samples were used. In experiment one, horses distinguished their own from their conspecifics' faeces, but did not differentiate between familiarity and sex. In experiment two, the horses from both groups paid most attention to the faeces of the horses from which they received the highest amount of aggressive behaviours. We therefore suggest that horses of both sexes can distinguish individual competitors among their group mates by the smell of their faeces. [ABSTRACT FROM AUTHOR]

The use of non-invasive genetic sampling (NGS) is becoming increasingly important in the study of wild animal populations. Obtaining DNA from faecal samples is of particular interest because faeces can be collected without deploying sample capture devices. However, PCR amplification of DNA extracted from faeces is problematic because of high concentrations of inhibitors. Here we present a method for increasing the successful application of donor DNA extracted from faecal samples through inhibitor reduction. After standard extraction with a DNA stool kit we used a 'Concentrated Chelex Treatment' (CCT) that increased the amplification success from 31.7 to 61.4% of loci. Our results suggest that darker supernatant and samples with more precipitate contain more inhibitors than lighter samples and samples with little or no precipitate. We expect the use of this technique to have wide applicability within conservation biology for research and management that relies on NGS of wild animal populations. [ABSTRACT FROM AUTHOR]