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Fruit color is a genetic trait and a key factor for consumer acceptability and is therefore receiving increasing importance in several breeding programs. Plant pigments offer plants with a variety of colored organs that attract animals for pollination, favoring seed dispersers and conservation of species. The pigments inside plant cells not only play a light-harvesting role but also provide protection against light damage and exhibit nutritional and ecological value for health and visual pleasure in humans. Tomato (Solanum lycopersicum) is a leading vegetable crop; its fruit color formation is associated with the accumulation of several natural pigments, which include carotenoids in the pericarp, flavonoids in the peel, as well as the breakdown of chlorophyll during fruit ripening. To improve tomato fruit quality, several techniques, such as genetic engineering and genome editing, have been used to alter fruit color and regulate the accumulation of secondary metabolites in related pathways. Recently, clustered regularly interspaced short palindromic repeat (CRISPR)-based systems have been extensively used for genome editing in many crops, including tomatoes, and promising results have been achieved using modified CRISPR systems, including CAS9 (CRISPR/CRISPR-associated-protein) and CRISPR/Cas12a systems. These advanced tools in biotechnology and whole genome sequencing of various tomato species will certainly advance the breeding of tomato fruit color with a high degree of precision. Here, we attempt to summarize the current advancement and effective application of genetic engineering techniques that provide further flexibility for fruit color formation. Furthermore, we have also discussed the challenges and opportunities of genetic engineering and genome editing to improve tomato fruit color. [ABSTRACT FROM AUTHOR]

Diabetic peripheral neuropathy (DPN) is one of the most important complications in diabetes mellitus (DM), which has been reported to be modulated by long non-coding RNAs (lncRNAs). The purpose of the current study is to explore the regulatory mechanism of lncRNA HCG18 on DPN in vitro. The expression of lncRNA HCG18, miR-146a, TRAF6, CD11c, and iNOS was detected by qRT-PCR. Through Enzyme-linked immunosorbent assay, the levels of inflammatory factors (TNF-α, IL-1β, and IL-6) were determined. M1 macrophage polarization was measured by flow cytometry analysis. The interactions between miR-146a and HCG18/TRAF6 were predicted by Starbase/Targetscan software and verified by the dual luciferase reporter assay. Western blot assay was performed to determine the protein expression of TRAF6. LncRNA HCG18 was highly expressed in DPN model and HG-induced macrophages. The levels of inflammatory factors (TNF-α, IL-1β, and IL-6) were elevated in DPN model. The expression of M1 markers (CD11c and iNOS) was visibly up-regulated in DPN model and was positively correlated with HCG18 expression. LncRNA HCG18 facilitated M1 macrophage polarization. In addition, miR-146a was identified as a target of lncRNA HCG18. Overexpression of miR-146a reversed the promoting effect of HCG18 on M1 macrophage polarization. Simultaneously, TRAF6 was a target gene of miR-146a TRAF6 expression was positively modulated by HCG18 and was negatively modulated by miR-146a. Down-regulation of TRAF6 reversed the promoting effect of HCG18 on M1 macrophage polarization. LncRNA HCG18 promotes M1 macrophage polarization via regulating the miR-146a/TRAF6 axis, facilitating the progression of DPN. This study provides a possible therapeutic strategy for DPN. [ABSTRACT FROM AUTHOR]

Key message: Found a trans-splicing of PHYTOENE SYNTHASE 1 alters tomato fruit color by map-based cloning, functional complementation and RACE providing an insight into fruit color development. Color is an important fruit quality trait and a major determinant of the economic value of tomato (Solanum lycopersicum). Fruit color inheritance in a yellow-fruited cherry tomato (cv. No. 22), named yellow-fruited tomato 2 (yft2), was shown to be controlled by a single recessive gene, YFT2. The YFT2 gene was mapped in a 95.7 kb region on chromosome 3, and the candidate gene, PHYTOENE SYNTHASE 1 (PSY1), was confirmed by functional complementation analysis. Constitutive over expression of PSY1 in yft2 increased the accumulation of carotenoids and resulted in a red fruit color, while no causal mutation was detected in the YFT2 allele of yft2, compared with red-fruited SL1995 cherry tomato or cultivated variety (cv. M82). Expression of YFT2 3′ region in yft2 was significantly lower than in SL1995, and further studies revealed a difference in YFT2 post-transcriptional processing in yft2 compared with SL1995 and cv. M82, resulting in a longer YFT2 transcript. The alternatively trans-spliced allele of YFT2 in yft2 is predicted to encode a novel LT-YFT2 protein of 432 amino acid (AA) residues, compared to the 412 AA YFT2 protein of SL1995. The trans-spliced event also resulted in significantly down regulated expression of YFT2 in yft2 tomato, and the YFT2 allele suppressed expression of the downstream genes involved in the carotenoid biosynthesis pathway and carotenoids synthesis by a mechanism of the feed-forward regulation. In conclusion, we found that trans-splicing of YFT2 alters tomato fruit color, providing new insights into fruit color development. [ABSTRACT FROM AUTHOR]

Key message: The isolated yft1 allele controls the formation of fruit color in n3122 via the regulation of response to ethylene, carotenoid accumulation and chromoplast development. Abstract: Fruit color is one of the most important quality traits of tomato ( Solanum lycopersicum) and is closely associated with both nutritional and market value. In this study, we characterized a tomato fruit color mutant n3122, named as yellow-fruited tomato 1 ( yft1), which produces yellow colored mature fruit. Fruit color segregation of the progeny from an intra-specific cross (M82 × n3122) and an inter-specific cross ( n3122 × LA1585) revealed that a single recessive nuclear gene determined the yellow fruit phenotype. Through map-based cloning, the yft1 locus was assigned to an 88.2 kb region at the top of chromosome 9 that was annotated as containing 12 genes. Sequencing revealed that one gene, Solyc09g007870, which encodes ETHYLENE INSENSITIVE2 ( EIN2), contained two mutations in yft1: a 13 bp deletion and a 573 bp insertion at position −318 bp upstream of the translation initiation site. We detected that EIN2 expression was substantially lower in yft1 than in the red-fruited M82 wild type and that, in addition, carotenoid accumulation was decreased, ethylene synthesis and perception were impaired and chromoplast development was delayed. The results implied that the reduced expression of EIN2 in yft1 leads to suppressed ethylene signaling which results in abnormal carotenoid production. [ABSTRACT FROM AUTHOR]

Biostimulation of petroleum reservoir to improve oil recovery has been conducted in a large number of oilfields. However, the roles and linkages of organic nutrients, inorganic salts and oxygen content during biostimulation have not been effectively elucidated. Therefore, we investigated the relationships between carbon source, nitrogen source, phosphorus source, oxygen content, and microbial stimulation, oil emulsification, and oil degradation. The organic nutrients (molasses) accelerated microbial growth, and promoted oil emulsification under aerobic conditions. The added molasses also promoted metabolites production (CO, CH and acetic acid) and microbial anaerobic hydrocarbon degradation under anaerobic conditions. (NH)HPO improved gases production by neutralizing the acidic production and molasses. NaNO could also improve gases production by inhibiting sulfate-reducing bacteria to adjust pH value. Oxygen supply was necessary for oil emulsification, but bountiful supply of oxygen aggravated oil degradation, leading the entire ranges of alkanes and some aromatic hydrocarbons were degraded. Core-flooding experiments showed an oil displacement efficiency of 13.81 % in test with air package injected, 8.56 % without air package injection, and 4.77 % in control test with air package injection and 3.61 % without air package injection. The results suggest that the combined effect of organic nutrients, inorganic salts and oxygen content determines microbial growth, while production of metabolites, oil emulsification and biodegradation alter the reservoir biochemical characters and influence oil recovery during stimulation. [ABSTRACT FROM AUTHOR]

The diversity and distribution of bacterial and archaeal communities in four different water flooding oil reservoirs with different geological properties were investigated using 16S rDNA clone library construction method. Canonical correspondence analysis was used to analyze microbial community clustering and the correlation with environmental factors. The results indicated that the diversity and abundance in the bacterial communities were significantly higher than the archaeal communities, while both of them had high similarity within the communities respectively. Phylogenetic analysis showed that of compositions of bacterial communities were distinctly different both at phylum and genus level. Proteobacteria dominated in each bacterial community, ranging from 61.35 to 75.83 %, in which α-proteobacteria and γ-proteobacteria were the main groups. In comparison to bacterial communities, the compositions of archaeal communities were similar at phylum level, while varied at genus level, and the dominant population was Methanomicrobia, ranging from 65.91 to 92.74 % in the single oil reservoir. The factor that most significantly influenced the microbial communities in these reservoirs was found to be temperature. Other environmental factors also influenced the microbial communities but not significantly. It is therefore assumed that microbial communities are formed by an accumulated effect of several factors. These results are essential for understanding ecological environment of the water flooding oil reservoirs and providing scientific guidance to the performance of MEOR technology. [ABSTRACT FROM AUTHOR]

Periodicity of Retzius lines is a key factor in dental development. In this study, we examined the periodicity of Retzius lines in fossil Pongo from South China using polarized light microscope observation of dental ground sections. The periodicities all of the 15 teeth were 9 d. Comparisons of periodicity were made with extant primates, fossil apes and hominins. Periodicity of fossil Pongo from South China was relatively long but fell within the variation of extant Pongo, Gorilla and modern human, and longer than periodicity of Pan and other extant primates. Fossil Pongo from South China was similar to Lufengpithecus and Sivapithecus, shorter than Gigantopithecus and longer than European and African fossil apes and most early hominins in periodicity. Generally, the periodicities of Asian large-body fossil apes were longer than the periodicities of European and African large-body fossil apes in Miocene. Difference among species and trend of evolution in periodicity were analyzed and discussed. We found that periodicity might gradually increase from Proconsul in early Miocene to several fossil apes in Miocene and then Gigantopithecus in Pleistocene. In addition, this study made correlate analysis between periodicity and body mass respectively in males and females of six extant apes and five fossil apes, and found that periodicity positively correlated with body mass. [ABSTRACT FROM AUTHOR]

Enamel stable carbon isotope analyses were conducted on the large fossil ape Gigantopithecus blacki and an associated mammalian megafauna from Longgudong Cave in Jianshi and Juyuandong Cave in Liucheng, South China. The range in δC values (−18.8‰ to −14.1‰) indicates that G. blacki and other large mammals fed on solely C3 biomass, and lived in forest habitats, and not open country or savannas. These results are consistent with other faunal and floral analyses for that time. The diet and habitat of G. blacki were significantly different from those of early hominins ( Australopithecus and Paranthropus) from South and East Africa. Extinction of G. blacki probably was a result of forest habitat fragmentation and deterioration. [ABSTRACT FROM AUTHOR]

Thymosin α1 (Tα1) was widely used for the treatment of hepatitis (B and C) and several cancers. However, current production of Tα1 is difficultly meeting clinical needs. To develop a novel and safety approach for Tα1 production, we synthesized a Tα1 gene (124 bp) based on the plant codon usage bias and constructed a four-copy Tα1 gene concatemer (408 bp) by using isocaudamer technique. This 4 × Tα1 structure was cloned into plant binary expression vector pCAMBIA2300 with twin transfer deoxyribonucleic acids (T-DNAs) and integrated into lettuce genome via Agrobacterium-mediated transformation. Thirteen positive plants were identified by polymerase chain reaction and confirmed by Southern blot analysis, and 11 marker-free lettuce plants were obtained in T2 generation. The content of recombined Tα1 (rTα1) protein reached 1798.317 ± 87.312 ng/g in fresh leaves of transgenic lettuce. 3-(4,5-Dimethylthiazol-2-yl)-2,5-diphenyl-2 H-tetrazolium bromide (MTT) assay demonstrated that rTα1 protein stimulated mouse splenic lymphocyte proliferation in vitro. These data suggest that biologically active rTα1 was successfully expressed in marker-free transgenic lettuce, and this method could provide an alternative choice for large-scale production of Tα1 in the future. [ABSTRACT FROM AUTHOR]

Fossil records indicate orangutan-like hominoids have been widely distributed in south China during Pleistocene, although currently only surviving in the tropical forests of Kalimantan and Sumatra in Indonesia. This paper describes the recently discovered hominoid fossil teeth from human site of Mulanshan cave in Chongzuo of Guangxi, whose geological age is the Late Pleistocene, about 11000 yeas age based on associated mammal fauna and U-series dating. Compared with those of modern and subfossil orangutans from Indonesia, other fossil great apes from China, the hominoid teeth from Mulanshan cave are orangutan-like, but show somehow different from Indonesia's orangutans, the average sizes of cheek teeth larger and occlusal enamel wrinkles less and simpler. They are classified temporarily as the subspecies of Pongo pygmaeus weidenreichi. Concerning the variations of morphological features and dental sizes of orangutan-like teeth from southern China and neighboring northern Vietnam, different subspecies or species or genus possibly, but the key evidence is necessary to be identified. [ABSTRACT FROM AUTHOR]

The taxonomy, age and environment status of the Yuanmou hominoids had been controversial since their discovery. We launched new excavations and investigations in the Yuanmou Basin and analyzed both old and newly collected data. We conclude that all hominoids from the Yuanmou Basin and the so-called Pliocene hominids can be attributed into a single species, and its valid nomination is Lufengpithecus hudienensis. It is different from Lufengpithecus lufengensis and Lufengpithecus keiyuanensis. Based on the faunal comparison and paleomagnetic correlation, the strata yielding the Yuanmou hominoids are older than those of Lufeng hominoids and younger than those of the Kaiyuan hominoids. The age of the Yuanmou hominoids is Late Miocene. The environments of the Yuanmou hominoids were subtropical, hilly, with some dense forestry and partial transitional bushes and seasonal climate. [ABSTRACT FROM AUTHOR]

Preliminary study on enamel microstructure of 5 lower permanent incisors of Late Miocene Yuanmou hominoids was conducted using a scanning electron microscope (SEM). The enamel incremental markings, as well as perikymata spacing and its periodicity were observed and counted. Using the perikymata number and periodicity, the crown formation times of the incisors are estimated. The transverse and longitudinal microstructures of the enamel prisms are also observed. Comparison of the dental development and enamel microstructure features of Yuanmou hominoids with those of Lufeng hominoids shows that there are similarities and also some differences between them. The relationship between Yuanmou hominoids and early hominids is discussed. [ABSTRACT FROM AUTHOR]

A hydrophobic cuticle consisting of waxes and the polyester cutin covers the aerial epidermis of all land plants, providing essential protection from desiccation and other stresses. We have determined the enzymatic basis of cutin polymerization through characterization of a tomato extracellular acyltransferase, CD1, and its substrate, 2-mono(10,16-dihydroxyhexadecanoyl)glycerol. CD1 has in vitro polyester synthesis activity and is required for cutin accumulation in vivo, indicating that it is a cutin synthase. [ABSTRACT FROM AUTHOR]