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The perennial grain intermediate wheatgrass (Thinopyrum intermedium, commercial name KernzaTM) has been proposed as a diversification crop for producing forage and grain and providing ecosystem services to farmers. Although a few studies have addressed farmers' interests in the crop, information is lacking about the links between farmers' goals and crop management, i.e., how farmers aim at integrating this crop in their systems. Closing this gap, this paper analyzes for the first time the introduction of intermediate wheatgrass (IWG) from a farmer perspective, as a set of decision plans and goals. The overarching orientations of the farm and organization of the production system, referred as strategic decisions, interact with short-term crop management (i.e., tactical decisions) and farmers' goals for IWG. In total, 17 individual semi-structured interviews and 2 collective crop management prototyping workshops in France were used to analyze farmers' rationales as a function of their farm systems, agronomic constraints, and know-how. The study demonstrates that farmers' interests in IWG revolved around multiple ecosystem services and financial returns. Three ideal-types of farms testing IWG emerged from the relationships between existing farming systems and goals for IWG. The strategic and tactical decisions regarding the integration and management of IWG were contingent on the farming systems, the goals for IWG, the farmers' know-how, and their ability to mitigate risks. Implications for the future development of intermediate wheatgrass as a niche innovation are considered based on farmers' points of view. This study provides insights into the ideas and concerns of French farmers regarding IWG and proposes a framework for discussing the introduction of a new crop in a farm system. [ABSTRACT FROM AUTHOR]

Main conclusion : New molecular markers were developed for targeting Thinopyrum intermedium 1St#2 chromosome, and novel FISH probe representing the terminal repeats was produced for identification of Thinopyrum chromosomes. Thinopyrum intermedium has been used as a valuable resource for improving the disease resistance and yield potential of wheat. A wheat- Th. intermedium ssp. trichophorum chromosome 1St#2 substitution and translocation has displayed superior grain protein and wet gluten content. With the aim to develop a number of chromosome 1St#2 specific molecular and cytogenetic markers, a high throughput, low-cost specific-locus amplified fragment sequencing (SLAF-seq) technology was used to compare the sequences between a wheat- Thinopyrum 1St#2 (1D) substitution and the related species Pseudoroegneria spicata (St genome, 2 n = 14). A total of 5142 polymorphic fragments were analyzed and 359 different SLAF markers for 1St#2 were predicted. Thirty-seven specific molecular markers were validated by PCR from 50 randomly selected SLAFs. Meanwhile, the distribution of transposable elements (TEs) at the family level between wheat and St genomes was compared using the SLAFs. A new oligo-nucleotide probe named Oligo-pSt122 from high SLAF reads was produced for fluorescence in situ hybridization (FISH), and was observed to hybridize to the terminal region of 1St#L and also onto the terminal heterochromatic region of Th. intermedium genomes. The genome-wide markers and repetitive based probe Oligo-pSt122 will be valuable for identifying Thinopyrum chromosome segments in wheat backgrounds. [ABSTRACT FROM AUTHOR]

Wheatgrass Thinopyrum intermedium (Host), or Agropyron intermedium (Host) (2 n = 42; genome formula, EEEEStSt) is one of the most valuable sources of highly effective resistance genes in wheat breeding. Bread wheat cultivars Tulaikovskaya 5, Tulaikovskaya 10, and Tulaikovskaya 100 derived from wheat- Thinopyrum crosses are highly resistant to leaf rust and powdery mildew, and moderately resistant to stem and yellow rust. C-banding, in situ hybridization, and assays with PLUG and SSR markers have demonstrated that wheat chromosome 6D in all three cultivars is substituted by the Th. intermedium homoeologous chromosome, 6Ai. This chromosome was designated 6Ai#2, because it differs from the earlier described homoeologous chromosome 6Ai#1. In situ hybridization with Pseudoroegneria spicata and Dasypyrum villosum genomic DNAs has allowed chromosome 6Ai#2 to be assigned to the E (=J) subgenome. Chromosome 6Ai#2 remained intact over long-term breeding efforts. Tests of leaf rust resistance of in F and F populations from a cross of a leaf rust-susceptible cultivar with Tulaikovskaya 10 has demonstrated that chromosome 6Ai#2 carries at least one gene locus for leaf rust resistance. This locus was designated Lr6Ai#2. It must be different from the known gene locus Lr38, located on the long arm of chromosome 7Ai#2 and now present in many translocation variants in bread wheat. The effect of a chromosome from the Th. intermedium subgenome E on resistance to powdery mildew, stem and yellow rust in Tulaikovskaya 5, Tulaikovskaya 10, and Tulaikovskaya 100 is discussed. [ABSTRACT FROM AUTHOR]

The wheat curl mite (WCM), Aceria tosichella Keifer (Trombidiformes: Eriophyidae), is a major pest in cropping regions of the world and is recognised as the primary vector of several yield-reducing pathogens, primarily affecting wheat. Management of WCM is complicated due to several aspects of the mite's biology and ecology; however, commercially viable mite resistant wheat varieties may offer practical long-term management options. Unfortunately, mite populations have adapted to previously identified sources of resistance, highlighting the need for further sources of resistance and the value of stacking different resistances to give greater degrees and longevity of control. In this study we assessed the susceptibility of 42 wheat-derived genotypes to mite population growth using a new experimental method that overcomes methodological limitations of previous studies. Experimental wheat lines included a variety of wheat genotypes, related Triticeae species, wheat-alien chromosome amphiploids, and chromosome addition or substitution lines. From these we identify new promising sources of WCM resistance associated with Thinopyrum intermedium, Th. ponticum and Hordeum marinum chromosomes. More specifically we identify group 1J and 5J chromosomes of the L3 and L5 wheat- Th. intermedium addition lines as new sources of resistance that could be exploited to transfer resistance onto homoeologous wheat chromosomes. This study offers new methods for reliable in situ estimations of mite abundance on cereal plants, and new sources of WCM resistance that may assist management of WCM and associated viruses in wheat. [ABSTRACT FROM AUTHOR]

Powdery mildew caused by Blumeria graminis (DC) Speer f. sp. tritici Em. Marchal is a serious disease of wheat ( Triticum aestivum L.) in Southwestern China. A line of common wheat designated 08-723 isolated from the progeny of a hybrid between common wheat and Thinopyrum intermedium (Host) Barkworth & Dewey, was highly resistant to the existing powdery mildew races in the region. This line had a similar phenotype to its wheat parent, and it showed normal bivalent pairing at metaphase I of meiosis. It was analyzed by genomic in situ hybridization, fluorescence in situ hybridization and sequential C-banding-GISH to determine the amount, location and origin of the alien chromatin present. The results revealed that line 08-723 is homozygous for a two-point translocation replacing chromosome 6A of wheat. The translocation chromosome appears to have a normal 6AL arm; its short arm has a short terminal segment of ca. 10 % in length originating from an unidentified B-genome chromosome of wheat and a long proximal segment of ca. 90 % of the arms' length originating from one of the St-genome chromosomes of Th. intermedium. Genetic analysis of powdery mildew resistance in F, F and F populations from a cross of 08-723 with a susceptible wheat line indicated that the resistance was controlled by a single dominant gene and in a sample of F2 plants it always associated with the translocated chromosome. The gene responsible for resistance on the translocated chromosome may provide an alternate source of resistance in wheat breeding programs. [ABSTRACT FROM AUTHOR]

Thinopyrum intermedium was identified previously as resistant to Tapesia yallundae, cause of eyespot of wheat. Using GUS-transformed isolates of T. yallundae as inoculum, we determined that wheat lines carrying Th. intermedium chromosome 4Ai#2 or the short arm of chromosome 4Ai#2 were as resistant to the pathogen as the eyespot-resistant wheat- Th. ponticum chromosome substitution line SS767 (PI 611939) and winter wheat cultivar Madsen, which carries gene Pch1 for eyespot resistance. Chromosome 4E from Th. elongatum and chromosome 4J from Th. bessarabicum did not confer resistance to T. yallundae. Genome-specific PCR primers confirmed the presence of Thinopyrum chromatin in these wheat- Thinopyrum lines. Genomic in situ hybridization using an St genomic probe from Pseudoroegneria strigosa demonstrated that chromosome 4Ai#2 belongs to the Js genome of Thinopyrum. The eyespot resistance in the wheat- Th. intermedium lines is thus controlled by the short arm of this Js chromosome. This is the first report of resistance to T. yallundae controlled by a Js genome chromosome of Th. intermedium. [ABSTRACT FROM AUTHOR]

We developed some wheat- Th. intermedium translocation lines,Yw642, Yw443 and Yw243, etc., showing good BYDV resistance from L1by induced homoeologous pairing using CS ph mutant. Characterization ofthese wheat lines was carried out by GISH and RFLP analysis. The resultsof GISH showed that the lines, YWw42, Yw443 and Yw243, etc., arehomozygous wheat- Th. intermedium translocation lines, in which thechromosome segments of Th. intermedium were transferred to thedistal end of a pair of wheat chromosomes. RFLP analysis indicated that thetranslocation chromosome of the wheat lines is T7DS · 7DL-7XL. Thebreakpoint of the translocation is located on the distal end of 7DL, betweenXpsr965 and Xpsr680 about 90–99 cm from the centromere. The BYDVgene is located on the distal end of 7XL around Xpsr680, Xpsr687 andXwg380. The RFLP markers of psr680, psr687 and wg380 werecosegregated with the BYDV resistance respectively and could be used formolecular assisted selection (MAS) in wheat breeding program for BYDVresistance. [ABSTRACT FROM AUTHOR]

Barley yellow dwarf (BYD) is the most important viral disease of small cereal grains. True resistance to the disease is not found in wheat (Triticum aestivum L.), but it has been introgressed from Thinopyrum intermedium (Ti) on chromosome 7DL of recombinant wheat lines designated TC. The objectives of our study were to identify a high through-put scoring tool for the presence of the translocated Th. intermedium fragment and to assess its suitability for evaluating resistance to BYDV in segregating populations. Segregation of the Ti fragment was followed in the F2 population of an Anza (bread wheat) by TC14/2*Spear (TC14) cross. Resistance to BYDV isolates PAV-Mex and MAV-Mex in F3, F4, and F5 populations was evaluated under field and/or greenhouse conditions by measuring the virus titers of infected plants using ELISA, and the number of infected plants per plot. The SSR marker gwm37 was polymorphic for the translocation. In F4 lines it was associated with the physical presence of an intact translocation on chromosome 7DL and with low virus titers of BYDV-PAV. Reductions in virus titer of 27% and 55% in the F3 and 18% and 45% in the F5 populations were observed when the fragment was present in the heterozygous and homozygous states, respectively, confirming a dosage effect of the resistance allele. A lower proportion of infected individuals in the field was associated with the presence of the fragment, indicating a mechanism that may interfere with aphid feeding or virus translocation within infected plants. Despite significant differences between groups with and without the fragment, the OD values of infected lines overlapped, and it was not possible to definitively detect the fragment based solely on ELISA. We conclude that gwm37 is a reliable marker for the Ti translocation that will allow efficient detection of the translocation in breeding populations and greatly assist in selecting BYDV-resistant wheats in the absence of the disease. [ABSTRACT FROM AUTHOR]

Intergeneric hybrids (ABDJJsS genomes) were made between Triticum aestivum cv. Chinese Spring (CS) and Thinopyrum intermedium. Genomic in situ hybridization (GISH) using genomic DNA probes from Pseudoroegneria libanotica (Hackel) D.R. Dewey (genome S, 2n = 14) was used to study chromosome pairing among J, Js, S and wheat ABD genomes in the hybrids. It was shown that in the hexaploid (ABDJJsS) hybrids, high pairing occurred among wheat chromosomes and among Thinopyrum chromosomes. A closer relationship was observed among the three genomes of Th. intermedium than among the three genomes of T. aestivum. It was further discerned that S genome chromosomes paired with J- and Js-genome chromosomes at a high frequency. The frequency of heterologous pairing between S and J or S and Js chromosomes was higher than those between J and Js chromosomes, indicating that the S-genome was more closely related with these two genomes. Our results provided direct molecular cytogenetic evidence for the hypothesis that S-genome chromosomes are genetically similar to the J-genome chromosomes and, therefore, genetic exchange between these genomes is possible. The discovery of a close relationship among S, J and Js genomes provides valuable markers for molecular cytogenetic analyses using S-genomic DNA probes in monitoring the transfer of useful traits from Thinopyrum species into wheat. [ABSTRACT FROM AUTHOR]

Genomic in situhybridization (GISH) to root-tip cells at mitotic metaphase, using genomic DNA probes from Thinopyrum intermedium and Pseudoroegneria strigosa, was used to examine the genomic constitution of Th. intermedium, the 56-chromosome partial amphiploid to wheat called Zhong 5 and disease-resistant derivatives of Zhong 5, in a wheat background. Evidence from GISH indicated that Th. intermedium contained seven pairs of St, seven JS and 21 J chromosomes; three pairs of Th. intermedium chromosomes with satellites in their short arms belonging to the St, J, J genomes and homoeologous groups 1, 1, and 5 respectively. GISH results using different materials and different probes showed that seven pairs of added Th. intermedium chromosomes in Zhong 5 included three pairs of St chromosomes, two pairs of JS chromosomes and two pairs of St-JS reciprocal tanslocation chromosomes. A pair of chromosomes, which substituted a pair of wheat chromosomes in Yi 4212 and in HG 295 and was added to 21 pairs of wheat chromosomes in the disomic additions Z1, Z2 and Z6, conferred BYDV-resistance and was identical to a pair of St-JS tanslocation chromosomes (StJS) in Zhong 5. The StJS chromosome had a special GISH signal pattern and could be easily distinguished from other added chromosomes in Zhong 5; it has not yet been possible to locate the BYDV-resistant gene(s) of this translocated chromosome either in the St chromosome portion belonging to homoeologous group 2 or in the JS chromosome portion whose homoeologous group relationship is still uncertain. Among 22 chromosome pairs in disomic addition line Z3, the added chromosome pair had satellites and belonged to the St genome and homoeologous group 1. Disomic addition line Z4 carried a pair of added chromosomes which was composed of a group-7 JS chromosome translocated with a wheat chromosome; this chromosome was different to 7 Ai-1, but was identical to 7 Ai-2. The leaf rust and stem rust resistance genes were located in the distal region of the long arm, whereas the stripe rust resistance gene(s) was located in the short arm or in the proximal region of the long arm of 7 Ai-2. A pair of JS-wheat translocation chromosomes, which originated from the WJS chromosomes in Z4, was added to the disomic addition line Z5; the added chromosomes of Z5 carried leaf and stem rust resistance but not stripe rust resistance; Z5 is a potentially useful source for rust resistance genes in wheat breeding and for cloning these novel rust-resistant genes. GISH analysis using the St genome as a probe has proved advantageous in identifying alien Th. intermedium in wheat. [ABSTRACT FROM AUTHOR]

The wheat line H960642 is a homozygous wheat- Thinopyrum intermedium translocation line with resistance to BYDV by genomic in situ hybridization (GISH) and RFLP analysis. The genomic DNA of Th. intermedium was used as a probe, and common wheat genomic DNA as a blocking in GISH experiment. The results showed that the chromosome segments of Th. intermedium were transferred to the distal end of a pair of wheat chromosomes. RFLP analysis indicated that the translocation line H960642 is a T7DS-7DL-7XL translocation by using 8 probes mapped on the homoeologous group 7 in wheat. The translocation breakpoint is located between Xpsr680 and Xpsr965 about 90–99 cM from the centromere. The RFLP markers psr680 and psr687 were closely linked with the BYDV resistance gene. The gene is located on the distal end of 7XL around Xpsr680 and Xpsr687. [ABSTRACT FROM AUTHOR]

Thinopyrum intermedium is a promising source of resistance to wheat streak mosaic virus (WSMV), a devastating disease of wheat. Three wheat germplasm lines possessing resistance to WSMV, derived from Triticum aestivum× Th. intermedium crosses, are analyzed by C-banding and genomic in situ hybridization (GISH) to determine the amount and location of alien chromatin in the transfer lines. Line CI15092 was confirmed as a disomic substitution line in which wheat chromosome 4A was replaced by Th. intermedium chromosome 4Ai?2. The other two lines, CI17766 and A29-13-3, carry an identical Robertsonian translocation chromosome in which the complete short arm of chromosome 4Ai?2 was transferred to the long arm of wheat chromosome 4A. Fluorescence in situ hybridization (FISH) using ABD genomic DNA from wheat as a probe and S genomic DNA from Pseudoroegneria stipifolia as the blocker, and vice versa, revealed that the entire short arm of the translocation was derived from the short arm of chromosome 4Ai?2 and the breakpoint was located at the centromere. Chromosomal arm ratios (L/S) of 2.12 in CI17766 and 2.15 in A29-13-3 showed that the translocated chromosome is submetacentric. This translocated chromosome is designated as T4AL ⋅ 4Ai?2S as suggested by Friebe et al. (1991). [ABSTRACT FROM AUTHOR]

A wheat line 14-569 developed from a hybrid of common wheat cv. Chuannong 10 with the wheat-Thinopyrum intermedium partial amphiploid TAI7045 exhibits stable double spikelets per node character in the lower middle portion of a spike, is highly resistant to stripe rust, and produces kernels with a higher 1000-kernel weight than those of its wheat parent. Chromosome counting and an analysis of meiosis demonstrated that line 14-569 is a disomic addition line with 2n = 44, 22II. Sequential genomic in situ hybridization and non-denaturing fluorescence in situ hybridization analyses indicated that one pair of St-genomic chromosomes from Th. intermedium was added to the wheat complement and that the wheat complement included one pair of 1RS/1BL wheat-rye translocation chromosomes. PCR-based landmark unique gene molecular marker analysis revealed that the added pair of chromosomes comprised 3St chromosomes, which suggested that the added 3St chromosomes from Th. intermedium might carry the genes to control the high yield-related characters and stripe rust resistance. This addition line will potentially be useful resource for improvements in wheat yields and stripe rust resistance. [ABSTRACT FROM AUTHOR]