26 results on '"Podoviridae"'
Search Results
2. A new Streptomyces scabies-infecting bacteriophage from Egypt with promising biocontrol traits.
- Author
-
Abdelrhim, Abdelrazek S., Ahmad, Abdelmonim Ali, Omar, Maha O. A., Hammad, Adel M. M., and Huang, Qi
- Subjects
- *
POTATOES , *PHYTOPATHOGENIC bacteria , *STREPTOMYCES , *BACTERIOPHAGES , *BIOLOGICAL pest control agents , *POTATO quality , *TUBERS - Abstract
Potato common scab caused by Streptomyces scabies is one of the most economically important diseases infecting potato. It reduces the quality of potato tubers, which subsequently decreases the tuber prices and causes significant economic losses for potato growers. Biological control using bacteriophages is a promising strategy for controlling this disease. In this study, a novel bacteriophage with high lytic efficacy against S. scabies was isolated from a potato field at El-Minya, Egypt, and was designated SscP1EGY. The phage has an icosahedral head of 55 nm and a short tail of 7.5 nm, typical of a podovirus. Its infection cycle was 90 min, including 50 min of latent time and 40 min of rise period with a burst size of approximately 200 PFU per infected cell. The genome of SscP1EGY consists 51,751 nucleotides with 76 predicted genes. SscP1EGY infected and completely lysed seven tested S. scabies strains but showed no lytic activity against three beneficial Streptomyces species, other beneficial bacterial species, and non-target plant pathogenic bacteria. In greenhouse experiments, treatment of S. scabies-inoculated potato tubers with phage SscP1EGY resulted in reductions of (1) the severity of scab, (2) the number of lesions, and (3) the percentage of lesion surface, as compared to the inoculated tubers without phage treatment. Also, scab lesions appeared superficial in phage-treated tubers but pitted in non-phage-treated tubers. Our results suggest that SscP1EGY has a potential as a biological control agent for S. scabies. Based on our knowledge, SscP1EGY is the first sequenced S. scabies-infecting phage in Egypt. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
3. C22 podovirus infectivity is associated with intermediate stiffness.
- Author
-
Sae-Ueng, Udom, Bhunchoth, Anjana, Phironrit, Namthip, Treetong, Alongkot, Sapcharoenkun, Chaweewan, Chatchawankanphanich, Orawan, Leartsakulpanich, Ubolsree, and Chitnumsub, Penchit
- Subjects
- *
PODOVIRIDAE , *VIRUS diseases , *BACTERIOPHAGES , *BIOLOGICAL control of bacteria , *NANOMECHANICS - Abstract
Bacteriophages have potential for use as biological control agents (biocontrols) of pathogenic bacteria, but their low stability is limiting for their utilization as biocontrols. Understanding of the conditions conducive to storage of phages in which infectivity is maintained over long periods will be useful for their application as biocontrols. We employed a nanomechanical approach to study how external environmental factors affect surface properties and infectivity of the podovirus C22 phage, a candidate for biocontrol of Ralstonia solanacearum, the agent of bacterial wilt in crops. We performed atomic force microscopy (AFM)-based nano-indentation on the C22 phage in buffers with varying pH and ionic strength. The infectivity data from plaque assay in the same conditions revealed that an intermediate range of stiffness was associated with phage titer that remained consistently high, even after prolonged storage up to 182 days. The data are consistent with the model that C22 phage must adopt a metastable state for maximal infectivity, and external factors that alter the stiffness of the phage capsid lead to perturbation of this infective state. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
4. Acid tolerance and morphological characteristics of five Weissella cibaria bacteriophages isolated from kimchi.
- Author
-
Kong, Se-Jin and Park, Jong-Hyun
- Abstract
Five bacteriophages were isolated from kimchi with the hosts of two Weissella cibaria and acid-producing bacteria, and characterized for understanding Weissella phage. By transmission electron microscope, фWC51 and фWC52 belonged to the Myoviridae and фWC005, фWC130, and фWC248 belonged to the Podoviridae. One-step growth curves showed that latent periods of bacteriophages ranged from 70 to 90 min and burst sizes ranged from 7 to 195 particles/cell. фWC51 and фWC005 were thermally resistant than the others and those D values were 71 and 34 s at 70 °C. pH stability test at pH 2.0–4.0 showed фWC005 was most stable and the others were also stable at low pH of 3.0. Interestingly, the phages showed two types of morphology and had a high tolerance under acidic condition, therefore, which might cause mortality to the Weissella after middle stage of kimchi fermentation. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
5. Host range and molecular characterization of a lytic Pradovirus-like Ralstonia phage RsoP1IDN isolated from Indonesia.
- Author
-
Addy, Hardian Susilo, Farid, Moh Miftah, Ahmad, Abdelmonim Ali, and Huang, Qi
- Subjects
- *
RALSTONIA , *RALSTONIA solanacearum , *DNA , *ENDONUCLEASES , *VIRUS diseases - Abstract
A lytic Ralstonia solanacearum-infecting phage designated Ralstonia phage RsoP1IDN was isolated from soil in Indonesia. The phage has a linear double-stranded DNA genome of 41,135 bp with 413-bp terminal repeats, and contains 41 annotated open reading frames. The phage is most closely related to Ralstonia phage RSB1, but different from RSB1 mainly in containing a putative HNH homing endonuclease and having a narrower host range. Our phylogenetic and genomic analyses revealed that both phages RsoP1IDN and RSB1 belong to the genus Pradovirus or a new genus, and not Phikmvvirus as previously reported for phage RSB1. RsoP1IDN is the first sequenced and characterized R. solanacearum-infecting phage isolated from Indonesia in the proposed species Ralstonia virus RsoP1IDN. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
6. A metagenomic study of the rumen virome in domestic caprids.
- Author
-
Namonyo, Samuel, Wagacha, Maina, Maina, Solomon, Wambua, Lillian, and Agaba, Morris
- Subjects
- *
METAGENOMICS , *RUMEN (Ruminants) , *NUCLEIC acid isolation methods , *PODOVIRIDAE , *MYOVIRIDAE - Abstract
This project sought to investigate the domestic caprid rumen virome by developing a robust viral DNA isolation and enrichment protocol (utilizing membrane filtration, ultra-centrifugation, overnight PEG treatment and nuclease treatment) and using RSD-PCR and high throughput sequencing (HTS) techniques. 3.53% of the reads obtained were analogous to those of viruses denoting Siphoviridae, Myoviridae, Podoviridae, Mimiviridae, Microviridae, Poxviridae, Tectiviridae and Marseillevirus. Most of the sequenced reads from the rumen were similar to those of phages, which are critical in maintaining the rumen microbial populations under its carrying capacity. Though identified in the rumen, most of these viruses have been reported in other environments as well. Improvements in the viral DNA enrichment and isolation protocol are required to obtain data that are more representative of the rumen virome. The 102,130 unknown reads (92.31%) for the goat and 36,241 unknown reads (93.86%) for the sheep obtained may represent novel genomes that need further study. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
7. Characterization of a novel lytic podovirus O4 of Pseudomonas aeruginosa.
- Author
-
Zhang, Fenjiao, Huang, Kechong, Yang, Xiaojing, Sun, Li, You, Jiajia, Pan, Xuewei, Cui, Xiaoli, and Yang, Hongjiang
- Subjects
- *
PSEUDOMONAS aeruginosa , *PODOVIRIDAE , *TRANSMISSION electron microscopes , *LIPOPOLYSACCHARIDES , *TRANSPOSONS , *EQUIPMENT & supplies , *BACTERIA - Abstract
Phage O4 of Pseudomonas aeruginosa was previously visualized as a short-tailed virus using a transmission electron microscope. In this work, the O4 genome was characterized to be a linear dsDNA molecule comprising 50509 bp with 76 predicted genes located in five clusters. Mass spectrometry showed that the O4 virion contains 6 putative structural proteins, 2 putative enzymes, and 7 hypothetical proteins. By analyzing a Tn5G transposon mutation library, eight genes, wbpR, wbpV, wbpO, wbpT, wbpS, wbpL, galU, and wzy, were identified and confirmed responsible for the phage-resistant phenotype; all of them are related to the synthesis of O-specific antigen (OSA) of lipopolysaccharide (LPS), indicating that OSA is the receptor for the adsorption of phage O4. Comparative genomic analysis revealed that the phage O4 genome shares little similarity to any known podovirus, indicating that phage O4 is classifiable as a novel member of the Podoviridae family. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
8. Complete Genome Sequence of a Novel T7-Like Bacteriophage from a <italic>Pasteurella multocida</italic> Capsular Type A Isolate.
- Author
-
Chen, Yibao, Sun, Erchao, Song, Jiaoyang, Yang, Lan, and Wu, Bin
- Subjects
- *
NUCLEOTIDE sequencing , *BACTERIOPHAGES , *PASTEURELLA multocida , *SWINE farms , *CAUDOVIRALES , *PODOVIRIDAE - Abstract
A novel virulent bacteriophage, vB_PmuP_PHB02 (phage PHB02), infecting
Pasteurella multocida capsular type A strains, was isolated from wastewater from a swine farm in China. Phage PHB02 has a linear double-stranded DNA genome consisting of 38,670 base pairs (bp), with a G+C content of 40.8% and a 127-bp terminal redundancy. Forty-eight putative open reading frames were identified, and no transfer RNA-encoding genes were detected. The morphology and genomic structure of phage PHB02 resemble those of T7-like phages belonging to the family Podoviridae, of the order Caudovirales. Phage PHB02 was stable over a wide range of temperatures (4-50 °C) and pH values (5.0-9.0), and lysed 30 of the 31 capsular-type-AP. multocida strains tested. Phage PHB02 had no effect on other bacterial species or onP. multocida strains belonging to capsular types D or F. [ABSTRACT FROM AUTHOR]- Published
- 2018
- Full Text
- View/download PDF
9. Isolation and characterization of a novel, T7-like phage against Aeromonas veronii.
- Author
-
Anand, Taruna, Bera, Bidhan Ch., Virmani, Nitin, Vaid, Rajesh Kumar, Vashisth, Medhavi, and Tripathi, Bhupendra Nath
- Abstract
A virulent Aeromonas veronii biovar sobria and the corresponding novel, lytic bacteriophage (VTCCBPA5) were isolated from village pond water. The phage was found to belong to family Podoviridae. PCR analysis of major capsid protein gene confirmed its classification to T7-like genus. The protein profiling by SDS-PAGE indicated the major structural protein to be ~ 45 kDa. The phage (VTCCBPA5) is host specific and is stable over a range of pH (6-10) and temperatures (4-45 °C). On the basis of restriction endonuclease analysis combined with prediction mapping, it was observed to vary significantly from previously reported podophages of Aeromonas sp., viz. phiAS7 and Ahp1. The phylogenetic analysis on the basis of PCR-amplified segment of DNA polymerase gene of phage revealed it being an outgroup from podophages of Klebsiella sp. and Pseudomonas sp. though a small internal fragment (359 bp) showed the highest identity (77%) with Vibrio sp. phages. Thus, this is the first report of a novel Podoviridae phage against A. veronii. It expands the assemblage of podophages against Aeromonas sp. and BPA5 could be potentially useful in biocontrol of environmentally acquired Aeromonas veronii infections. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
10. Complete genome sequence of a novel, virulent Ahjdlikevirus bacteriophage that infects Enterococcus faecium.
- Author
-
Xing, Shaozhen, Zhang, Xianglilan, Sun, Qiang, Wang, Jian, Mi, Zhiqiang, Pei, Guangqian, Huang, Yong, An, Xiaoping, Fu, Kaifei, Zhou, Lijun, Zhao, Baohua, and Tong, Yigang
- Subjects
- *
BACTERIOPHAGE-host relationships , *ENTEROCOCCUS faecium , *PODOVIRIDAE , *OPEN reading frames (Genetics) , *VIRAL genomes , *NUCLEOTIDE sequencing , *VIRUSES - Abstract
A novel virulent bacteriophage named vB_EfaP_IME199 that specifically infects Enterococcus faecium was isolated and characterized. Its optimal multiplicity of infection was 0.01, and it had a 30 minute outbreak period. High-throughput sequencing revealed that the phage has a dsDNA genome of 18,838 bp with 22 open reading frames. The genome has very low homology to all other bacteriophage sequences in the GenBank database. Run-off sequencing experiments confirmed that vB_EfaP_IME199 has short inverted terminal repeats. Phylogenetic analysis indicated that vB_EfaP_IME199 can be taxonomically classified as a new member of the genus Ahjdlikevirus of family Podoviridae. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
11. A Bacteriophage Mediated Gold Nanoparticles Synthesis and Their Anti-biofilm Activity.
- Author
-
Ahiwale, S., Bankar, A., Tagunde, S., and Kapadnis, B.
- Subjects
- *
GOLD nanoparticles , *BACTERIOPHAGES , *PODOVIRIDAE , *CHEMICAL synthesis , *CHEMICAL reactions - Abstract
In the present study, gold nanoparticles (AuNPs) synthesis was carried out by using a rare bacteriophage which is morphologically similar to 7-11 phages of the C3 morphotype of tailed phage belonging to Podoviridae family as green route. Effect of various physiological parameters like pH, temperature and concentration of gold chloride salt on AuNPs synthesis was studied. The reaction mixtures have shown vivid colours at various physiological parameters. Phage inspired AuNPs were further characterized by using different techniques such as UV-Vis spectrophotometry, scanning electron microscopy (SEM), energy dispersive spectroscopy (EDS), X-ray diffraction (XRD) and dynamic light scattering (DLS). DLS study revealed synthesis of various sizes of AuNPs in the range of 20-100 nm. SEM studies revealed synthesis of varied shaped AuNPs, viz., spheres, hexagons, triangles, rhomboids and rectangular etc. The presence of Au in the nanostructures was confirmed by EDS. The XRD pattern reflects the crystalline nature and nano size of AuNPs. These phage inspired AuNPs showed anti-bacterial activity against different bacterial pathogens. Anti-biofilm activity of AuNPs was evaluated on a glass slide. It was noticed that at 0.2 mM concentration of these AuNPs about 80% of biofilm formation by Pseudomonas aeruginosa, a human pathogen was inhibited. Thus, the phage inspired AuNPs synthesis could be potential therapeutic agents against human pathogens. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
12. Complete genome sequence of the lytic cold-active Pseudomonas fluorescens bacteriophage VSW-3 from Napahai plateau wetland.
- Author
-
Zhang, Chunjing, Zhang, Zhongyao, Li, Jiankai, Qin, Kunhao, Wei, Yunlin, Zhang, Qi, Lin, Lianbing, and Ji, Xiuling
- Abstract
The lytic cold-active bacteriophage VSW-3, belonging to the Podoviridae family and infecting the host Pseudomonas fluorescens SW-3, was isolated from the Napahai plateau wetland in China. With the development of sequencing technology, the study of Pseudomonas genomic diversity has increased; however, knowledge of cold-active phages infecting Pseudomonas is limited. The newly sequenced phage VSW-3 was classified based on virion morphology by transmission electron microscope. Sequence analysis revealed that the genome size was 40,556 bp with an overall GC content of 57.54 % and 46 open reading frames. The genome was organized into several modules containing genes for packaging, structural proteins, replication/transcription, and phage lysis. The sequence contained 45 potential promoters, 3 transcription terminators, and yet no tRNAs. This is the first report of cold-active Pseudomonas fluorescens bacteriophage genome sequencing. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
13. Complete genome sequence of DU_RP_II, a novel Ralstonia solanacearum phage of the family Podoviridae.
- Author
-
Park, Tae-Ho
- Subjects
- *
PODOVIRIDAE , *RALSTONIA solanacearum , *NUCLEOTIDE sequencing , *BACTERIOPHAGES , *HOMOLOGY (Biology) - Abstract
DU_RP_II, a bacteriophage of the family Podoviridae, which lyses Ralstonia solanacearum, was isolated from a diseased plant sample, and its genome was completely sequenced. The genome was found to be 42,091 base pairs long and to be a circular double-stranded DNA with a GC content of 62.17% and 38 predicted coding sequences. The phage showed homology to the RSK1 phage in four coding sequences, but it was concluded that the phage differed from previously reported Ralstonia phages based on the results of both morphology and bioinformatics analysis. This suggests that the phage DU_RP_II is a new member of the family Podoviridae. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
14. Characterization of the morphology and genome of an Escherichia coli podovirus.
- Author
-
Hua, Yuhui, An, Xiaoping, Pei, Guangqian, Li, Shasha, Wang, Wei, Xu, Xiaomeng, Fan, Huahao, Huang, Yong, Zhang, Zhiyi, Mi, Zhiqiang, Chen, Jiankui, Li, Jingyun, Zhang, Feixiong, and Tong, Yigang
- Subjects
- *
ESCHERICHIA coli morphology , *VIRAL genomes , *PODOVIRIDAE , *PATHOGENIC bacteria , *SEPTICEMIA treatment , *BACTERIAL disease treatment - Abstract
Escherichia coli is an important opportunistic pathogen. It can cause sepsis and severe infection. The application of lytic bacteriophages to treat infectious diseases is an alternative to antibiotics. A lytic Escherichia coli phage, designated IME-EC2, was isolated from hospital sewage. Transmission electron microscopy revealed that IME-EC2 to be a member of the family Podoviridae. It had a 60-nm head and a 15-nm tail. Here, we present the complete genome sequence of this phage, which consists of 41,510 bp with an overall G+C content of 59.2 %. A total of 60 coding sequences (CDS) were identified, and the phage genome does not contain any tRNA genes. Forty percent of the unknown CDSs are unique to IME-EC2. This phage does not show significant similarity to other phages at the DNA level, which suggests that IME-EC2 could be a novel phage. One of the unique features identified in the IME-EC2 genome was a gene coding for a putative colanic-acid-degrading protein, which could allow the phage to degrade bacterial capsule and biofilms. Another unique feature is that IME-EC2 does not contain a terminase small subunit, which suggests that this phage may have a unique packaging mechanism. The present work provides novel information on phages and shows that this lytic phage or its products could be exploited to destroy bacterial biofilms and pathogenic E. coli. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
15. Insights into new bacteriophages of Lactococcus garvieae belonging to the family Podoviridae.
- Author
-
Ghasemi, Seyed, Bouzari, Majid, Shaykh Baygloo, Nima, and Chang, Hyo-Ihl
- Subjects
- *
BACTERIOPHAGES , *LACTOCOCCUS , *PODOVIRIDAE , *AQUACULTURE , *TRANSMISSION electron microscopy , *NUCLEIC acids - Abstract
Lactococcus garvieae is an emerging pathogen responsible for lactococcosis, a serious disease in trout aquaculture. The identification of new bacteriophages against L. garvieae strains may be an effective way to fight this disease and to study the pathogen's biology. Three L. garvieae phages, termed WP-1, WWP-2 and SP-2, were isolated from different environments, and their morphological features, genome restriction profiles and structural protein patterns were studied. Random cloning of HindIII-cut fragments was performed, and the fragments were partially sequenced for each phage. Although slight differences were observed by transmission electron microscopy, all of the phages had hexagonal heads and short non-contractile tails and were classified as members of the family Podoviridae. Restriction digestion analysis of the nucleic acids of the different phages revealed that the HindIII and AseI digests produced similar DNA fragment patterns. Additionally, SDS-PAGE analysis indicated that the isolated phages have similar structural proteins. The sequence BLAST results did not show any significant similarity with other previously identified phages. To the best of our knowledge, this study provides the first molecular characterization of L. garvieae phages. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
16. Preliminary characterization of Lactococcus garvieae bacteriophage isolated from wastewater as a potential agent for biological control of lactococcosis in aquaculture.
- Author
-
Ghasemi, Seyed, Bouzari, Majid, and Emtiazi, Giti
- Subjects
- *
LACTOCOCCUS , *PODOVIRIDAE , *ANTIBACTERIAL agents , *RAINBOW trout , *RAINBOW trout fishing - Abstract
Lactococcosis, a significant emerging disease of fish caused by Lactococcus garvieae, has become one of the devastating problems due to its serious economic damage in aquaculture. The aim of this study was to isolate and characterize a lytic phage infecting L. garvieae as a potential bioagent for the treatment of lactococcosis. In this regard, one strain of L. garvieae was isolated from diseased rainbow trout, and then, following biochemical and molecular identifications, its specific phage, WWP-1, which was able to destroy L. garvieae cells through the lytic cycle, was isolated from a municipal wastewater sample. Transmission electron microscope revealed that the isolated phage possesses an icosahedral head and a non-contractile short tail, resembled to members of the family Podoviridae. Moreover, phage WWP-1 represented optimal antibacterial activity at temperatures ranging from 15 to 30 °C, suggesting that it could be very effective at rainbow trout rearing temperature. Restriction profile analysis revealed that NdeI can digest WWP-1 genome while EcoRI, EcoRV, and BamHI were incapable of cutting its DNA. According to the in vivo experiment result, WWP-1 could decrease mortality rate of infected rainbow trout in aquaculture. The results suggest that this naturally occurring bacteriophage could be considered as a promising agent to control the disease caused by L. garvieae strains in rainbow trout rearing. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
17. Isolation and Characterization of Two Cyanophages Infecting some Anabaena spp.
- Author
-
Abd El Salam, E. T., Shabana, E. F., and Shams El Din, A. M.
- Subjects
- *
ANABAENA , *BACTERIOPHAGES , *MYOVIRIDAE , *ORYZAEPHILUS , *PODOVIRIDAE - Abstract
Two phages were isolated from different freshwater places. The partially purified phages were characterized by morphology, host range and physical properties. Effect of salts and some other chemicals on the phages were studied. Isolated Anabaena flos-aquae Cyanophage with a polyhedral head 192 nm in diameter may belong to Myoviridae, while isolated Anabaena oryzae cyanophage was a polyhedral head 115 nm in diameter, may belong to Podoviridae. The cyanophage infected A. flos-aquae was completely inactivated at 80°C for 10 min, while that infected A. oryzae, was completely inactivated at 76°C for 10 min. Results revealed that monovalent and divalent cations had stimulatory effect on both phages. Mg2+cations were stimulatory to cyanophage infected A. flos-aquae, while had no effect on cyanophage infected A. oryzae. For Cu2+, Ag2+, Ni2+, Pb2+ cations, no change was detected. EDTA had inhibitory effect on both phages. Optimum infectivity of cyanophage infected A. flos-aquae was at pH 7 and for that infected A. oryzae was at pH 9. [ABSTRACT FROM AUTHOR]
- Published
- 2014
18. Isolation and characterisation of KP34-a novel φKMV-like bacteriophage for Klebsiella pneumoniae.
- Author
-
Drulis-Kawa, Zuzanna, Mackiewicz, Paweł, Kęsik-Szeloch, Agata, Maciaszczyk-Dziubinska, Ewa, Weber-Dąbrowska, Beata, Dorotkiewicz-Jach, Agata, Augustyniak, Daria, Majkowska-Skrobek, Grażyna, Bocer, Tomasz, Empel, Joanna, and Kropinski, Andrew
- Subjects
- *
BACTERIOPHAGES , *VIRUSES , *KLEBSIELLA pneumoniae , *ANTIBACTERIAL agents , *NUCLEOTIDE sequence - Abstract
Bacteriophage KP34 is a novel virus belonging to the subfamily Autographivirinae lytic for extended-spectrum β-lactamase-producing Klebsiella pneumoniae strains. Its biological features, morphology, susceptibility to chemical and physical agents, burst size, host specificity and activity spectrum were determined. As a potential antibacterial agent used in therapy, KP34 molecular features including genome sequence and protein composition were examined. Phylogenetic analyses and clustering of KP34 phage genome sequences revealed its clear relationships with 'phiKMV-like viruses'. Simultaneously, whole-genome analyses permitted clustering and classification of all phages, with completely sequenced genomes, belonging to the Podoviridae. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
19. Antibacterial and biofilm removal activity of a podoviridae Staphylococcus aureus bacteriophage SAP-2 and a derived recombinant cell-wall-degrading enzyme.
- Author
-
Jee-Soo Son, Se-Jung Lee, Soo Jun, Seong Yoon, Sang Kang, Hyoung Paik, Jung Kang, and Yun-Jaie Choi
- Subjects
- *
ANTIBACTERIAL agents , *BIOFILMS , *STAPHYLOCOCCUS aureus , *GRAM-positive bacteria , *BACTERIOPHAGES , *BACTERIAL cell walls , *METHICILLIN resistance , *DRUG resistance in microorganisms , *BACTERIAL diseases - Abstract
Antibacterial and biofilm removal activity of a new podoviridae Staphylococcus aureus bacteriophage (SAP-2), which belongs to the φ29-like phage genus of the Podoviridae family, and a cell-wall-degrading enzyme (SAL-2), which is derived from bacteriophage SAP-2, have been characterized. The cell-wall-degrading enzyme SAL-2 was expressed in Escherichia coli in a soluble form using a low-temperature culture. The cell-wall-degrading enzyme SAL-2 had specific lytic activity against S. aureus, including methicillin-resistant strains, and showed a minimum inhibitory concentration of about 1 μg/ml. In addition, this enzyme showed a broader spectrum of activity within the Staphylococcus genus compared with bacteriophage SAP-2 in its ability to remove the S. aureus biofilms. Thus, the cell-wall-degrading enzyme SAL-2 can be used to prevent and treat biofilm-associated S. aureus infections either on its own or in combination with other cell-wall-degrading enzymes with anti- S. aureus activity. [ABSTRACT FROM AUTHOR]
- Published
- 2010
- Full Text
- View/download PDF
20. Bacteriophage lytic to Desulfovibrio aespoeensis isolated from deep groundwater.
- Author
-
Eydal, Hallgerd S. C., Jägevall, Sara, Hermansson, Malte, and Pedersen, Karsten
- Subjects
- *
MICROBIOLOGY , *BACTERIOPHAGES , *PROKARYOTES , *MICROORGANISMS , *GROUNDWATER - Abstract
Viruses were earlier found to be 10-fold more abundant than prokaryotes in deep granitic groundwater at the Äspö Hard Rock Laboratory (HRL). Using a most probable number (MPN) method, 8–30 000 cells of sulphate-reducing bacteria per ml were found in groundwater from seven boreholes at the Äspö HRL. The content of lytic phages infecting the indigenous bacterium Desulfovibrio aespoeensis in Äspö groundwater was analysed using the MPN technique for phages. In four of 10 boreholes, 0.2−80 phages per ml were found at depths of 342–450 m. Isolates of lytic phages were made from five cultures. Using transmission electron microscopy, these were characterized and found to be in the Podoviridae morphology group. The isolated phages were further analysed regarding host range and were found not to infect five other species of Desulfovibrio or 10 Desulfovibrio isolates with up to 99.9% 16S rRNA gene sequence identity to D. aespoeensis. To further analyse phage–host interactions, using a direct count method, growth of the phages and their host was followed in batch cultures, and the viral burst size was calculated to be ∼170 phages per lytic event, after a latent period of ∼70 h. When surviving cells from infected D. aespoeensis batch cultures were inoculated into new cultures and reinfected, immunity to the phages was found. The parasite–prey system found implies that viruses are important for microbial ecosystem diversity and activity, and for microbial numbers in deep subsurface groundwater. [ABSTRACT FROM AUTHOR]
- Published
- 2009
- Full Text
- View/download PDF
21. Evolution of Viral DNA-Dependent DNA Polymerases.
- Author
-
Knopf, Charles
- Abstract
DNA viruses as their host cells require a DNA-dependent DNA polymerase (Pol) to faithfully replicate their genomic information. Large eukaryotic DNA viruses as well as bacterial viruses encode a specific Pol equipped with a proofreading 3′-5′-exonuclease, and other replication proteins. All known viral Pol belong to family A and family B Pol. Common to all viral Pol is the conservation of the 3′-5′-exonuclease domain manifested by the three sequence motifs Exo I, Exo II, and Exo III. The polymerase domain of family A and B Pol is clearly distinguishable. Family A Pol share 9 distinct consensus sequences, only two of them are convincingly homologous to sequence motif B of family B Pol. The putative sequence motifs A, B, and C of the polymerase domain are located near the C-terminus in family A Pol and more central in family B Pol. Thus, family A Pol show a significant greater spacing between the Exo III motif and the Pol motif A that is especially extended in the case of the mitochondrial Pol γ. From each host and virus family whenever possible the consensus sequences of two distantly related polymerase species were aligned for assessment of phylogenetic trees, using both maximum parsimony and distance methods, and evaluated by bootstrap analysis. Three alternative methods yielded trees with identical major groupings. A subdivision of viral family B Pol was achieved resulting in a branch with Pol carrying out a protein-primed mechanism of DNA replication, including adenoviruses, bacteriophages and linear plasmids of plant and fungal origin. Archaebacterial Pol and cellular Pol ∈ were consistently found at the base of this branch. Another major branch comprised alpha- and delta-like viral Pol from mammalian herpesviruses, fish lymphocystis disease virus, insect ascovirus, and chlorella virus. Due to a lower branch integrity Pol of T-even bacteriophages, poxviruses, African swine fever virus, fish herpesvirus, and baculoviruses were not clearly resolved and placed in alternate groupings. A composite and rooted tree of family A and B Pol shows that viral Pol with a protein-priming requirement represent the oldest viral Pol species suggesting that the protein-primed mechanism is one of the earliest modes of viral DNA replication. [ABSTRACT FROM AUTHOR]
- Published
- 1998
- Full Text
- View/download PDF
22. The genome sequence of enterobacterial phage 7-11, which possesses an unusually elongated head.
- Author
-
Kropinski, Andrew, Lingohr, Erika, and Ackermann, Hans-Wolfgang
- Subjects
- *
NUCLEOTIDE sequence , *ENTEROBACTERIACEAE diseases , *GENOMES , *SALMONELLA , *BACTERIOPHAGES , *MIRIDAE , *ELECTRON microscopy , *POLYETHYLENE glycol - Abstract
Phage 7-11 is a podovirus with an elongated head of 154 × 40 nm and a tail of 12 × 9 nm. The double-stranded DNA genome is 89.9 kb long, has a mol% G + C content of 44.1 and encodes 151 ORFs and six tRNAs. Phylogenetic analysis reveals that it is related to coliphage phiEco32. [ABSTRACT FROM AUTHOR]
- Published
- 2011
- Full Text
- View/download PDF
23. Contribution of Podoviridae and Myoviridae bacteriophages to the effectiveness of anti-staphylococcal therapeutic cocktails.
- Author
-
Kornienko, Maria, Kuptsov, Nikita, Gorodnichev, Roman, Bespiatykh, Dmitry, Guliaev, Andrei, Letarova, Maria, Kulikov, Eugene, Veselovsky, Vladimir, Malakhova, Maya, Letarov, Andrey, Ilina, Elena, and Shitikov, Egor
- Subjects
- *
PODOVIRIDAE , *MYOVIRIDAE , *THERAPEUTIC use of bacteriophages , *MULTIDRUG resistance in bacteria , *STAPHYLOCOCCUS aureus - Abstract
Bacteriophage therapy is considered one of the most promising therapeutic approaches against multi-drug resistant bacterial infections. Infections caused by Staphylococcus aureus are very efficiently controlled with therapeutic bacteriophage cocktails, containing a number of individual phages infecting a majority of known pathogenic S. aureus strains. We assessed the contribution of individual bacteriophages comprising a therapeutic bacteriophage cocktail against S. aureus in order to optimize its composition. Two lytic bacteriophages vB_SauM-515A1 (Myoviridae) and vB_SauP-436A (Podoviridae) were isolated from the commercial therapeutic cocktail produced by Microgen (Russia). Host ranges of the phages were established on the panel of 75 S. aureus strains. Phage vB_SauM-515A1 lysed 85.3% and vB_SauP-436A lysed 68.0% of the strains, however, vB_SauP-436A was active against four strains resistant to vB_SauM-515A1, as well as to the therapeutic cocktail per se. Suboptimal results of the therapeutic cocktail application were due to extremely low vB_SauP-436A1 content in this composition. Optimization of the phage titers led to an increase in overall cocktail efficiency. Thus, one of the effective ways to optimize the phage cocktails design was demonstrated and realized by using bacteriophages of different families and lytic spectra. [ABSTRACT FROM AUTHOR]
- Published
- 2020
- Full Text
- View/download PDF
24. An accessory wall teichoic acid glycosyltransferase protects Staphylococcus aureus from the lytic activity of Podoviridae.
- Author
-
Li, Xuehua, Gerlach, David, Du, Xin, Larsen, Jesper, Stegger, Marc, Kühner, Petra, Peschel, Andreas, Xia, Guoqing, and Winstel, Volker
- Subjects
- *
TEICHOIC acid , *STAPHYLOCOCCUS aureus , *PODOVIRIDAE , *LYTIC cycle , *PALINDROMIC DNA - Abstract
Many Staphylococcus aureus have lost a major genetic barrier against phage infection, termed clustered regularly interspaced palindromic repeats (CRISPR/cas). Hence, S. aureus strains frequently exchange genetic material via phage-mediated horizontal gene transfer events, but, in turn, are vulnerable in particular to lytic phages. Here, a novel strategy of S. aureus is described, which protects S. aureus against the lytic activity of Podoviridae, a unique family of staphylococcal lytic phages with short, non-contractile tails. Unlike most staphylococcal phages, Podoviridae require a precise wall teichoic acid (WTA) glycosylation pattern for infection. Notably, TarM-mediated WTA α-O-GlcNAcylation prevents infection of Podoviridae while TarS-mediated WTA β-O-GlcNAcylation is required for S. aureus susceptibility to podoviruses. Tracking the evolution of TarM revealed an ancient origin in other staphylococci and vertical inheritance during S. aureus evolution. However, certain phylogenetic branches have lost tarM during evolution, which rendered them podovirus-susceptible. Accordingly, lack of tarM correlates with podovirus susceptibility and can be converted into a podovirus-resistant phenotype upon ectopic expression of tarM indicating that a 'glyco-switch' of WTA O-GlcNAcylation can prevent the infection by certain staphylococcal phages. Since lytic staphylococcal phages are considered as anti-S. aureus agents, these data may help to establish valuable strategies for treatment of infections. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
25. Genomic characterization of JG068, a novel virulent podovirus active against Burkholderia cenocepacia
- Author
-
Ashraf H Abdu, Jonathan J. Dennis, Max Schobert, and Karlene H Lynch
- Subjects
Burkholderia stabilis ,Phage therapy ,Burkholderia cenocepacia ,medicine.medical_treatment ,Molecular Sequence Data ,Genome, Viral ,Host Specificity ,Autographivirinae ,Microbiology ,Viral Proteins ,03 medical and health sciences ,ϕKMV-like phages ,Sequence Homology, Nucleic Acid ,Lysogenic cycle ,Burkholderia dolosa ,medicine ,Genetics ,Promoter Regions, Genetic ,Soil Microbiology ,030304 developmental biology ,Terminator Regions, Genetic ,0303 health sciences ,Base Sequence ,Sewage ,Virulence ,biology ,030306 microbiology ,Burkholderia cepacia complex ,Burkholderia multivorans ,Virion ,Molecular Sequence Annotation ,Sequence Analysis, DNA ,Podoviridae ,biology.organism_classification ,3. Good health ,Lytic cycle ,Galleria mellonella ,SAR endolysin ,Transcription Initiation Site ,Research Article ,Biotechnology - Abstract
Background As is true for many other antibiotic-resistant Gram-negative pathogens, members of the Burkholderia cepacia complex (BCC) are currently being assessed for their susceptibility to phage therapy as an antimicrobial treatment. The objective of this study was to perform genomic and limited functional characterization of the novel BCC phage JG068 (vB_BceP_JG068). Results JG068 is a podovirus that forms large, clear plaques on Burkholderia cenocepacia K56-2. Host range analysis indicates that this phage can infect environmental, clinical, and epidemic isolates of Burkholderia multivorans, B. cenocepacia, Burkholderia stabilis, and Burkholderia dolosa, likely through interaction with the host lipopolysaccharide as a receptor. The JG068 chromosome is 41,604 base pairs (bp) in length and is flanked by 216 bp short direct terminal repeats. Gene expression originates from both host and phage promoters and is in the forward direction for all 49 open reading frames. The genome sequence shows similarity to Ralstonia phage ϕRSB1, Caulobacter phage Cd1, and uncharacterized genetic loci of blood disease bacterium R229 and Burkholderia pseudomallei 1710b. CoreGenesUniqueGenes analysis indicates that JG068 belongs to the Autographivirinae subfamily and ϕKMV-like phages genus. Modules within the genome encode proteins involved in DNA-binding, morphogenesis, and lysis, but none associated with pathogenicity or lysogeny. Similar to the signal-arrest-release (SAR) endolysin of ϕKMV, inducible expression of the JG068 SAR endolysin causes lysis of Escherichia coli that is dependent on the presence of an N-terminal signal sequence. In an in vivo assay using the Galleria mellonella infection model, treatment of B. cenocepacia K56-2-infected larvae with JG068 results in a significant increase in larval survival. Conclusions As JG068 has a broad host range, does not encode virulence factors, is obligately lytic, and has activity against an epidemic B. cenocepacia strain in vivo, this phage is a highly promising candidate for BCC phage therapy development.
- Full Text
- View/download PDF
26. Isolation and characterization of a novel podovirus which infects burkholderia pseudomallei
- Author
-
Jinyu Shan, Kanyanan Kritsiriwuthinan, Martha R. J. Clokie, Jiraporn Gatedee, Sunee Korbsrisate, Narin Intarak, Elena Dubinina, and Edouard E. Galyov
- Subjects
Melioidosis ,Burkholderia pseudomallei ,Short Report ,Genome, Viral ,Genome ,Host Specificity ,Microbiology ,lcsh:Infectious and parasitic diseases ,Bacteriophage ,03 medical and health sciences ,Podoviridae ,Viral Proteins ,Ralstonia ,bacteriophage ,Virology ,medicine ,lcsh:RC109-216 ,Bacteriophages ,Genome size ,Phylogeny ,Soil Microbiology ,030304 developmental biology ,0303 health sciences ,biology ,030306 microbiology ,Virion ,biology.organism_classification ,medicine.disease ,bacterial infections and mycoses ,3. Good health ,Infectious Diseases ,DNA, Viral ,bacteria ,Bacteria - Abstract
Burkholderia pseudomallei is a saprophytic soil bacterium and the etiological agent that causes melioidosis. It is naturally resistant to many antibiotics and therefore is difficult to treat. Bacteriophages may provide an alternative source of treatment. We have isolated and characterised the bacteriophage ΦBp-AMP1. The phage is a member of the Podoviridae family and has a genome size of ~ 45 Kb. Molecular data based on the gene which encodes for the phage tail tubular protein suggests that the phage is distinct from known phages but related to phages which infect B. thailandensis and Ralstonia spp. The phage ΦBp-AMP1 is the first B. pseudomallei podovirus to be isolated from the environment rather than being induced from a bacterial culture. It has a broad host range within B. pseudomallei and can infect all 11 strains that we tested it on but not related Burkholderia species. It is heat stable for 8 h at 50°C but not stable at 60°C. It may potentially be a useful tool to treat or diagnose B. pseudomallei infections as it can lyse several strains of clinical relevance.
- Full Text
- View/download PDF
Catalog
Discovery Service for Jio Institute Digital Library
For full access to our library's resources, please sign in.