1. EEF1A1 transcription cofactor gene polymorphism is associated with muscle gene expression and residual feed intake in Nelore cattle.
- Author
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Cardoso, T. F., Bruscadin, J. J., Afonso, J., Petrini, J., Andrade, B. G. N., de Oliveira, P. S. N., Malheiros, J. M., Rocha, M. I. P., Zerlotini, A., Ferraz, J. B. S., Mourão, G. B., Coutinho, L. L., and Regitano, L. C. A.
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GENE expression ,GENETIC polymorphisms ,CATTLE feeding & feeds ,REGULATOR genes ,GENETIC variation ,GENE regulatory networks ,CATTLE breeds - Abstract
Cis-acting effects of noncoding variants on gene expression and regulatory molecules constitute a significant factor for phenotypic variation in complex traits. To provide new insights into the impacts of single-nucleotide polymorphisms (SNPs) on transcription factors (TFs) and transcription cofactors (TcoF) coding genes, we carried out a multi-omic analysis to identify cis-regulatory effects of SNPs on these genes' expression in muscle and describe their association with feed efficiency-related traits in Nelore cattle. As a result, we identified one SNP, the rs137256008C > T, predicted to impact the EEF1A1 gene expression (β = 3.02; P-value = 3.51E-03) and the residual feed intake trait (β = − 3.47; P-value = 0.02). This SNP was predicted to modify transcription factor sites and overlaps with several QTL for feed efficiency traits. In addition, co-expression network analyses showed that animals containing the T allele of the rs137256008 SNP may be triggering changes in the gene network. Therefore, our analyses reinforce and contribute to a better understanding of the biological mechanisms underlying gene expression control of feed efficiency traits in bovines. The cis-regulatory SNP can be used as biomarker for feed efficiency in Nelore cattle. [ABSTRACT FROM AUTHOR]
- Published
- 2022
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