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Soils store more carbon than other terrestrial ecosystems1,2. How soil organic carbon (SOC) forms and persists remains uncertain1,3, which makes it challenging to understand how it will respond to climatic change3,4. It has been suggested that soil microorganisms play an important role in SOC formation, preservation and loss5–7. Although microorganisms affect the accumulation and loss of soil organic matter through many pathways4,6,8–11, microbial carbon use efficiency (CUE) is an integrative metric that can capture the balance of these processes12,13. Although CUE has the potential to act as a predictor of variation in SOC storage, the role of CUE in SOC persistence remains unresolved7,14,15. Here we examine the relationship between CUE and the preservation of SOC, and interactions with climate, vegetation and edaphic properties, using a combination of global-scale datasets, a microbial-process explicit model, data assimilation, deep learning and meta-analysis. We find that CUE is at least four times as important as other evaluated factors, such as carbon input, decomposition or vertical transport, in determining SOC storage and its spatial variation across the globe. In addition, CUE shows a positive correlation with SOC content. Our findings point to microbial CUE as a major determinant of global SOC storage. Understanding the microbial processes underlying CUE and their environmental dependence may help the prediction of SOC feedback to a changing climate.A deep learning and data-driven modelling study finds that microbial carbon use efficiency is a major determinant of soil organic carbon storage and its spatial variation across the globe. [ABSTRACT FROM AUTHOR]

Density dependence in an ecological community has been observed in many macro-organismal ecosystems and is hypothesized to maintain biodiversity but is poorly understood in microbial ecosystems. Here, we analyze data from an experiment using quantitative stable isotope probing (qSIP) to estimate per-capita growth and mortality rates of bacterial populations in soils from several ecosystems along an elevation gradient which were subject to nutrient addition of either carbon alone (glucose; C) or carbon with nitrogen (glucose + ammonium-sulfate; C + N). Across all ecosystems, we found that higher population densities, quantified by the abundance of genomes per gram of soil, had lower per-capita growth rates in C + N-amended soils. Similarly, bacterial mortality rates in C + N-amended soils increased at a significantly higher rate with increasing population size than mortality rates in control and C-amended soils. In contrast to the hypothesis that density dependence would promote or maintain diversity, we observed significantly lower bacterial diversity in soils with stronger negative density-dependent growth. Here, density dependence was significantly but weakly responsive to nutrients and was not associated with higher bacterial diversity. [ABSTRACT FROM AUTHOR]

Scope: Biochemistry is an essential yet undervalued aspect of soil ecology, especially when analyzing soil C cycling. We assume, based on tradition, intuition or hope, that the complexity of biochemistry is confined to the microscopic world, and can be ignored when dealing with whole soil systems. This opinion paper draws attention to patterns caused by basic biochemical processes that permeate the world of ecosystem processes. From these patterns, we can estimate activities of the biochemical reactions of the central C metabolic network and gain insights into the ecophysiology of microbial biosynthesis, growth, and maintenance energy requirements: important components of Carbon Use Efficiency (CUE). Observations: We show that glucose is processed via the Embden-Meyerhof-Parnas glycolysis in one soil, but via Pentose Phosphate or Entner-Doudoroff pathways in two other soils. However, notwithstanding this metabolic diversity, glucose use efficiency is high and thus substrate use for maintenance energy and overflow respiration is low in these soils. These results contradict current dogma, based on four decades of debate in soil ecology, that the maintenance energy demand in soil communities is a quantitative important, although variable, component of soil community energy metabolism. Conclusions: We identify three main shortcomings in our current understanding of substrate use efficiency: 1) in numeric and conceptual models, we lack appreciation of the strategies that microbes employ to quickly reduce energy needs in response to starvation; 2) in order to understand variation in CUE, we need to improve our understanding of the processes of exudation (including all changes in allocation of C from the cell soluble to insoluble fraction and extracellular environment) and microbial turnover; and 3) whether tracer experiments can be used to measure the long-term substrate use efficiency of soil microbial communities depends critically on the ability and speed with which non-growing cells take up tracer substrates and metabolism activates and subsequently de-activates in response to starvation, as well as on how cellular activities scale to the community level. To move the field of soil ecology forward, future research must consider the details of microbial ecophysiology and develop new tools that enable direct measurement of microbial functioning in intact soils. We submit that 13C metabolic flux analysis is one of those new tools. [ABSTRACT FROM AUTHOR]

Nutrient amendment diminished bacterial functional diversity, consolidating carbon flow through fewer bacterial taxa. Here, we show strong differences in the bacterial taxa responsible for respiration from four ecosystems, indicating the potential for taxon-specific control over soil carbon cycling. Trends in functional diversity, defined as the richness of bacteria contributing to carbon flux and their equitability of carbon use, paralleled trends in taxonomic diversity although functional diversity was lower overall. Among genera common to all ecosystems, Bradyrhizobium, the Acidobacteria genus RB41, and Streptomyces together composed 45–57% of carbon flow through bacterial productivity and respiration. Bacteria that utilized the most carbon amendment (glucose) were also those that utilized the most native soil carbon, suggesting that the behavior of key soil taxa may influence carbon balance. Mapping carbon flow through different microbial taxa as demonstrated here is crucial in developing taxon-sensitive soil carbon models that may reduce the uncertainty in climate change projections. The fate of soil carbon depends on microbial processes, but whether different microbial taxa have individualistic effects on carbon fluxes is unknown. Here the authors use 16 S amplicon sequencing and stable isotopes to show how taxonomic differences influence bacterial respiration and carbon cycling across four ecosystems. [ABSTRACT FROM AUTHOR]

Despite abounding evidence that leaf litter traits can predict decomposition rate, the way these traits influence trophic efficiency and element transfer to higher trophic levels is not resolved. Here, we used litter labeled with 13C and 15N stable isotopes to trace fluxes of litter C and N from four leaf types to freshwater invertebrate communities. We measured absolute (mg C or N) and relative assimilation (percentage of litter C or N incorporated into invertebrate biomass relative to C and N lost during decomposition). Four patterns emerged: (1) Invertebrate communities assimilated more C and N from slowly decomposing litter than communities feeding on rapidly decomposing litter; (2) absolute assimilation of both C and N in leaf packs was positively correlated with the relative biomass of invertebrate taxa in leaf packs; (3) Chironomidae larvae, which colonize packs in the early decomposition stages, assimilated the most C and N by the end of the 35-day experiment; and (4) most taxa, spanning five functional feeding groups (collector–gatherers, shredders, collector–filterers, scrapers, and predators), showed similar patterns in both absolute and relative assimilation across leaf types. These results challenge traditional views of litter quality by demonstrating that trophic efficiency is negatively associated with decomposition rate across these four leaf types. [ABSTRACT FROM AUTHOR]

Background and aims: Through agriculture and industry, humans are increasing the deposition and availability of nitrogen (N) in ecosystems worldwide. Carbon (C) isotope tracers provide useful insights into soil C dynamics, as they allow to study soil C pools of different ages. We evaluated to what extent N enrichment affects soil C dynamics in experiments that applied C isotope tracers. Methods: Using meta-analysis, we synthesized data from 35 published papers. We made a distinction between "new C" and "old C" stocks, i.e., soil C derived from plant C input since the start of the isotopic enrichment, or unlabeled, pre-existing soil C. Results: Averaged across studies, N addition increased new soil C stocks (+30.3%), total soil C stocks (+6.1%) and soil C input proxies (+30.7%). Although N addition had no overall, average, effect on old soil C stocks and old soil C respiration, old soil C stocks increased with the amount of N added and respiration of old soil C declined. Nitrogen-induced effects on new soil C and soil C input both decreased with the amount of extraneous N added in control treatments. Conclusion: Although our findings require additional confirmation from long-term field experiments, our analysis provides isotopic evidence that N addition stimulates soil C storage both by increasing soil C input and (at high N rates) by decreasing decomposition of old soil C. Furthermore, we demonstrate that the widely reported saturating response of plant growth to N enrichment also applies to new soil C storage. [ABSTRACT FROM AUTHOR]

Classical niche partitioning theory posits increased competition for and partitioning of the most limiting resource among coexisting species. Coexisting plant species may vary in rooting depth, reflecting niche partitioning in water source use. Our goal was to assess the soil water partitioning of woody plant communities across northern Arizona along an elevational moisture gradient using stem and soil water isotopes from two sampling periods to estimate the use of different water sources. We hypothesized that niche overlap of water sources would be higher and monsoon precipitation uptake would be lower at sites with higher moisture availability. Pairwise niche overlap of coexisting species was calculated using mixing model estimates of proportional water use for three sources. Across the moisture gradient, niche overlap increased with site moisture index (precipitation/potential evapotranspiration) across seasons, and site moisture index explained 37% of the variation in niche overlap of intermediate and deeper sources of water. Desert trees utilized more winter source water than desert shrubs, suggesting the partitioning of water sources between functional groups. However, seasonal differences in surface water use were primarily found at intermediate levels of site moisture availability. Our findings support classical niche partitioning theory in that plants exhibit higher overlap of water sources when water is not a limiting resource. [ABSTRACT FROM AUTHOR]

Leaf litter provides an important resource to forested stream ecosystems. During leaf fall a significant amount of dissolved organic carbon (DOC) enters streams as leaf leachate. We compared the effects of plant species and leaf leachate bioavailability on the composition of stream bacterial communities and rates of DOC decomposition. We used four common riparian tree species that varied in foliar chemistry, leachate optical properties, and litter decomposition rate. We used laboratory microcosms from two streams and amended with a standard concentration of DOC derived from leaf leachate of the four tree species. After 24 h, we measured rates of DOC biodegradation and determined the composition of the bacterial communities via bar-coded pyrosequencing of the 16S rRNA gene. The composition, diversity, and abundance of the bacterial community differed significantly among plant species from both streams. The phylogenetic distance of the different bacterial communities correlated with species-specific leachate optical properties and rates of DOC biodegradation. Highest rates of DOC decomposition were associated with high tannin and lignin leaf types. Results demonstrate that riparian plant species strongly influences stream bacterial communities via their leachate suggesting that alterations to the presence or abundance of riparian plant taxa may influence these communities and associated ecosystem processes. [ABSTRACT FROM AUTHOR]

Background and aims: Plant growth promoting rhizobacteria (PGPR) have been shown to reduce abiotic stress on plants, but these effects have not been quantitatively synthesized. We evaluated the degree to which plant growth promoting rhizobacteria (PGPR) improve plant performance with and without drought stress. Methods: We used meta-analysis to summarize 52 published articles on the effects of PGPR on root mass, shoot mass and yield under well-watered and drought conditions. We also asked whether fertilization treatments, experimental conditions, inoculum taxonomic complexity, plant functional group, or inoculum delivery method introduce variation in the effect size of PGPR. Results: Across all treatments, plants were highly responsive to PGPR; under well-watered conditions, root mass increased by 35%, shoot mass increased by 28%, and reproductive yield increased by 19%. Under drought conditions, the effect was even higher: root mass increased by 43%, shoot mass increased by 45%, and reproductive yield increased by 40%. The effect of PGPR was significantly larger under drought for shoot mass ( p < 0.05) and reproductive yield ( p < 0.05), but not for root mass. PGPR responsiveness also varied according to plant functional group, with C grass shoot production responding the least strongly to PGPR. Conclusions: We demonstrate that PGPR are highly effective for improving plant growth, with a greater effect under drought for above ground traits. While previously known for their bio-control abilities, we show that PGPR may also contribute to drought amelioration and water conservation. [ABSTRACT FROM AUTHOR]

Foliar chemistry influences leaf decomposition, but little is known about how litter chemistry affects the assemblage of bacterial communities during decomposition. Here we examined relationships between initial litter chemistry and the composition of the bacterial community in a stream ecosystem. We incubated replicated genotypes of Populus fremontii and P. angustifolia leaf litter that differ in percent tannin and lignin, then followed changes in bacterial community composition during 28 days of decomposition using 16S rRNA gene-based pyrosequencing. Using a nested experimental design, the majority of variation in bacterial community composition was explained by time (i.e., harvest day) ( R = 0.50). Plant species, nested within harvest date, explained a significant but smaller proportion of the variation ( R = 0.03). Significant differences in community composition between leaf species were apparent at day 14, but no significant differences existed among genotypes. Foliar chemistry correlated significantly with community composition at day 14 ( r = 0.46) indicating that leaf litter with more similar phytochemistry harbor bacterial communities that are alike. Bacteroidetes and β-proteobacteria dominated the bacterial assemblage on decomposing leaves, and Verrucomicrobia and α- and δ-proteobacteria became more abundant over time. After 14 days, bacterial diversity diverged significantly between leaf litter types with fast-decomposing P. fremontii hosting greater richness than slowly decomposing P. angustifolia; however, differences were no longer present after 28 days in the stream. Leaf litter tannin, lignin, and lignin: N ratios all correlated negatively with diversity. This work shows that the bacterial community on decomposing leaves in streams changes rapidly over time, influenced by leaf species via differences in genotype-level foliar chemistry. [ABSTRACT FROM AUTHOR]

Many studies have assessed the responses of soil microbial functional groups to increases in atmospheric CO or N deposition alone and more rarely in combination. However, the effects of elevated CO and N on the (de)coupling between different microbial functional groups (e.g., different groups of nitrifiers) have been barely studied, despite potential consequences for ecosystem functioning. Here, we investigated the short-term combined effects of elevated CO and N supply on the abundances of the four main microbial groups involved in soil nitrification: ammonia-oxidizing archaea (AOA), ammonia-oxidizing bacteria (AOB), and nitrite-oxidizing bacteria (belonging to the genera Nitrobacter and Nitrospira) in grassland mesocosms. AOB and AOA abundances responded differently to the treatments: N addition increased AOB abundance, but did not alter AOA abundance. Nitrobacter and Nitrospira abundances also showed contrasted responses to the treatments: N addition increased Nitrobacter abundance, but decreased Nitrospira abundance. Our results support the idea of a niche differentiation between AOB and AOA, and between Nitrobacter and Nitrospira. AOB and Nitrobacter were both promoted at high N and C conditions (and low soil water content for Nitrobacter), while AOA and Nitrospira were favored at low N and C conditions (and high soil water content for Nitrospira). In addition, Nitrobacter abundance was positively correlated to AOB abundance and Nitrospira abundance to AOA abundance. Our results suggest that the couplings between ammonia and nitrite oxidizers are influenced by soil N availability. Multiple environmental changes may thus elicit rapid and contrasted responses between and among the soil ammonia and nitrite oxidizers due to their different ecological requirements. [ABSTRACT FROM AUTHOR]

Decomposing leaf litter in streams provides habitat and nutrition for aquatic insects. Despite large differences in the nutritional qualities of litter among different plant species, their effects on aquatic insects are often difficult to detect. We evaluated how leaf litter of two dominant riparian species ( Populus fremontii and P. angustifolia) influenced carbon and nitrogen assimilation by aquatic insect communities, quantifying assimilation rates using stable isotope tracers (C, N). We tested the hypothesis that element fluxes from litter of different plant species better define aquatic insect community structure than insect relative abundances, which often fail. We found that (1) functional communities (defined by fluxes of carbon and nitrogen from leaf litter to insects) were different between leaf litter species, whereas more traditional insect communities (defined by relativized taxa abundances) were not different between leaf litter species, (2) insects assimilated N, but not C, at a higher rate from P. angustifolia litter compared to P. fremontii, even though P. angustifolia decomposes more slowly, and (3) the C:N ratio of material assimilated by aquatic insects was lower for P. angustifolia compared to P. fremontii, indicating higher nutritional quality, despite similar initial litter C:N ratios. These findings provide new evidence for the effects of terrestrial plant species on aquatic ecosystems via their direct influence on the transfer of elements up the food web. We demonstrate how isotopically labeled leaf litter can be used to assess the functioning of insect communities, uncovering patterns undetected by traditional approaches and improving our understanding of the association between food web structure and element cycling. [ABSTRACT FROM AUTHOR]

Forests are a significant part of the global carbon cycle and are increasingly viewed as tools for mitigating climate change. Natural disturbances, such as fire, can reduce carbon storage. However, many forests and dependent species evolved with frequent fire as an integral ecosystem process. We used a landscape forest simulation model to evaluate the effects of endangered species habitat management on carbon sequestration. We compared unmanaged forests (control) to forests managed with prescribed burning and prescribed burning combined with thinning. Management treatments followed guidelines of the recovery plan for the endangered red-cockaded woodpecker (RCW), which requires low-density longleaf pine ( Pinus palustris) forest. The unmanaged treatment provided the greatest carbon storage, but at the cost of lost RCW habitat. Thinning and burning treatments expanded RCW habitat by increasing the dominance of longleaf pine and reducing forest density, but stored 22% less total ecosystem carbon compared to the control. Our results demonstrate that continued carbon sequestration and the provision of RCW habitat are not incompatible goals, although there is a tradeoff between habitat extent and total ecosystem carbon across the landscape. Management for RCW habitat might also increase ecosystem resilience, as longleaf pine is tolerant of fire and drought, and resistant to pests. Restoring fire-adapted forests requires a reduction in carbon. However, the size of the reduction, the effects on sequestration rates, and the co-benefits from other ecosystem services should be evaluated in the context of the specific forest community targeted for restoration. [ABSTRACT FROM AUTHOR]

Rising temperatures are expected to reduce global soil carbon (C) stocks, driving a positive feedback to climate change. However, the mechanisms underlying this prediction are not well understood, including how temperature affects microbial enzyme kinetics, growth efficiency (MGE), and turnover. Here, in a laboratory study, we show that microbial turnover accelerates with warming and, along with enzyme kinetics, determines the response of microbial respiration to temperature change. In contrast, MGE, which is generally thought to decline with warming, showed no temperature sensitivity. A microbial-enzyme model suggests that such temperature sensitive microbial turnover would promote soil C accumulation with warming, in contrast to reduced soil C predicted by traditional biogeochemical models. Furthermore, the effect of increased microbial turnover differs from the effects of reduced MGE, causing larger increases in soil C stocks. Our results demonstrate that the response of soil C to warming is affected by changes in microbial turnover. This control should be included in the next generation of models to improve prediction of soil C feedbacks to warming. [ABSTRACT FROM AUTHOR]

Increased atmospheric CO2 and rising temperatures are expected to affect rice yields and greenhouse-gas (GHG) emissions from rice paddies. This is important, because rice cultivation is one of the largest human-induced sources of the potent GHG methane (CH4) and rice is the world's second-most produced staple crop. The need for meeting a growing global food demand argues for assessing GHG emissions from croplands on the basis of yield rather than land area, such that efforts to reduce GHG emissions take into consideration the consequences for food production. However, it is unclear whether or how the GHG intensity (that is, yield-scaled GHG emissions) of cropping systems will be affected by future atmospheric conditions. Here we show, using meta-analysis, that increased atmospheric CO2 (ranging from 550 to 743 ppmV) and warming (ranging from +0.8 °C to +6 °C) both increase the GHG intensity of rice cultivation. Increased atmospheric CO2 increased GHG intensity by 31.4%, because CH4 emissions are stimulated more than rice yields. Warming increased GHG intensity by 11.8% per 1 °C, largely owing to a decrease in yield. This analysis suggests that rising CO2 and warming will approximately double the GHG intensity of rice production by the end of the twenty-first century, stressing the need for management practices that optimize rice production while reducing its GHG intensity as the climate continues to change. [ABSTRACT FROM AUTHOR]

Evidence is mounting that extinctions are altering key processes important to the productivity and sustainability of Earth's ecosystems. Further species loss will accelerate change in ecosystem processes, but it is unclear how these effects compare to the direct effects of other forms of environmental change that are both driving diversity loss and altering ecosystem function. Here we use a suite of meta-analyses of published data to show that the effects of species loss on productivity and decomposition-two processes important in all ecosystems-are of comparable magnitude to the effects of many other global environmental changes. In experiments, intermediate levels of species loss (21-40%) reduced plant production by 5-10%, comparable to previously documented effects of ultraviolet radiation and climate warming. Higher levels of extinction (41-60%) had effects rivalling those of ozone, acidification, elevated CO2 and nutrient pollution. At intermediate levels, species loss generally had equal or greater effects on decomposition than did elevated CO2 and nitrogen addition. The identity of species lost also had a large effect on changes in productivity and decomposition, generating a wide range of plausible outcomes for extinction. Despite the need for more studies on interactive effects of diversity loss and environmental changes, our analyses clearly show that the ecosystem consequences of local species loss are as quantitatively significant as the direct effects of several global change stressors that have mobilized major international concern and remediation efforts. [ABSTRACT FROM AUTHOR]

Global environmental changes are expected to alter ecosystem carbon and nitrogen cycling, but the interactive effects of multiple simultaneous environmental changes are poorly understood. Effects of these changes on the production of nitrous oxide (NO), an important greenhouse gas, could accelerate climate change. We assessed the responses of soil NO fluxes to elevated CO, heat, altered precipitation, and enhanced nitrogen deposition, as well as their interactions, in an annual grassland at the Jasper Ridge Global Change Experiment (CA, USA). Measurements were conducted after 6, 7 and 8 years of treatments. Elevated precipitation increased NO efflux, especially in combination with added nitrogen and heat. Path analysis supported the idea that increased denitrification due to increased soil water content and higher labile carbon availability best explained increased NO efflux, with a smaller, indirect contribution from nitrification. In our data and across the literature, single-factor responses tended to overestimate interactive responses, except when global change was combined with disturbance by fire, in which case interactive effects were large. Thus, for chronic global environmental changes, higher order interactions dampened responses of NO efflux to multiple global environmental changes, but interactions were strongly positive when global change was combined with disturbance. Testing whether these responses are general should be a high priority for future research. [ABSTRACT FROM AUTHOR]

Elevated CO is expected to lower plant nutrient concentrations via carbohydrate dilution and increased nutrient use efficiency. Elevated CO consistently lowers plant foliar nitrogen, but there is no consensus on CO effects across the range of plant nutrients. We used meta-analysis to quantify elevated CO effects on leaf, stem, root, and seed concentrations of B, Ca, Cu, Fe, K, Mg, Mn, P, S, and Zn among four plant functional groups and two levels of N fertilization. CO effects on plant nutrient concentration depended on the nutrient, plant group, tissue, and N status. CO reduced B, Cu, Fe, and Mg, but increased Mn concentration in the leaves of N fixers. Elevated CO increased Cu, Fe, and Zn, but lowered Mn concentration in grass leaves. Tree leaf responses were strongly related to N status: CO significantly decreased Cu, Fe, Mg, and S at high N, but only Fe at low N. Elevated CO decreased Mg and Zn in crop leaves grown with high N, and Mn at low N. Nutrient concentrations in crop roots were not affected by CO enrichment, but CO decreased Ca, K, Mg and P in tree roots. Crop seeds had lower S under elevated CO. We also tested the validity of a 'dilution model.' CO reduced the concentration of plant nutrients 6.6% across nutrients and plant groups, but the reduction is less than expected (18.4%) from carbohydrate accumulation alone. We found that elevated CO impacts plant nutrient status differently among the nutrient elements, plant functional groups, and among plant tissues. Our synthesis suggests that differences between plant groups and plant organs, N status, and differences in nutrient chemistry in soils preclude a universal hypothesis strictly related to carbohydrate dilution regarding plant nutrient response to elevated CO. [ABSTRACT FROM AUTHOR]

Global temperature increases and precipitation changes are both expected to alter ecosystem carbon (C) cycling. We tested responses of ecosystem C cycling to simulated climate change using field manipulations of temperature and precipitation across a range of grass-dominated ecosystems along an elevation gradient in northern Arizona. In 2002, we transplanted intact plant-soil mesocosms to simulate warming and used passive interceptors and collectors to manipulate precipitation. We measured daytime ecosystem respiration (ER) and net ecosystem C exchange throughout the growing season in 2008 and 2009. Warming generally stimulated ER and photosynthesis, but had variable effects on daytime net C exchange. Increased precipitation stimulated ecosystem C cycling only in the driest ecosystem at the lowest elevation, whereas decreased precipitation showed no effects on ecosystem C cycling across all ecosystems. No significant interaction between temperature and precipitation treatments was observed. Structural equation modeling revealed that in the wetter-than-average year of 2008, changes in ecosystem C cycling were more strongly affected by warming-induced reduction in soil moisture than by altered precipitation. In contrast, during the drier year of 2009, warming induced increase in soil temperature rather than changes in soil moisture determined ecosystem C cycling. Our findings suggest that warming exerted the strongest influence on ecosystem C cycling in both years, by modulating soil moisture in the wet year and soil temperature in the dry year. [ABSTRACT FROM AUTHOR]

Severe wildfire may cause long-term changes in the soil-atmosphere exchange of carbon dioxide and methane, two gases known to force atmospheric warming. We examined the effect of a severe wildfire 10 years after burning to determine decadal-scale changes in soil gas fluxes following fire, and explored mechanisms responsible for these dynamics. We compared soil carbon dioxide efflux, methane uptake, soil temperature, soil water content, soil O horizon mass, fine root mass, and microbial biomass between a burned site and an unburned site that had similar stand conditions to the burned site before the fire. Compared to the unburned site, soil carbon dioxide efflux was 40% lower and methane uptake was 49% higher at the burned site over the 427-day measurement period. Soil O horizon mass, microbial biomass, fine root mass, and surface soil water content were lower at the burned site than the unburned site, but soil temperature was higher. A regression model showed soil carbon dioxide efflux was more sensitive to changes in soil temperature at the burned site than the unburned site. The relative importance of methane uptake to carbon dioxide efflux was higher at the burned site than the unburned site, but methane uptake compensated for only 1.5% of the warming potential of soil carbon dioxide efflux at the burned site. Our results suggest there was less carbon available at the burned site for respiration by plants and microbes, and the loss of the soil O horizon increased methane uptake in soil at the burned site. [ABSTRACT FROM AUTHOR]

Global environmental changes are expected to impact the abundance of plants and animals aboveground, but comparably little is known about the responses of belowground organisms. Using meta-analysis, we synthesized results from over 75 manipulative experiments in order to test for patterns in the effects of elevated CO, warming, and altered precipitation on the abundance of soil biota related to taxonomy, body size, feeding habits, ecosystem type, local climate, treatment magnitude and duration, and greenhouse CO enrichment. We found that the positive effect size of elevated CO on the abundance of soil biota diminished with time, whereas the negative effect size of warming and positive effect size of precipitation intensified with time. Trophic group, body size, and experimental approaches best explained the responses of soil biota to elevated CO, whereas local climate and ecosystem type best explained responses to warming and altered precipitation. The abundance of microflora and microfauna, and particularly detritivores, increased with elevated CO, indicative of microbial C limitation under ambient CO. However, the effects of CO were smaller in field studies than in greenhouse studies and were not significant for higher trophic levels. Effects of warming did not depend on taxon or body size, but reduced abundances were more likely to occur at the colder and drier sites. Precipitation limited all taxa and trophic groups, particularly in forest ecosystems. Our meta-analysis suggests that the responses of soil biota to global change are predictable and unique for each global change factor. [ABSTRACT FROM AUTHOR]

We determined the response of terrestrial methane (CH) uptake to 4 years of full-factorial manipulations of precipitation and temperature in four ecosystems along a 50 km warm and dry to cold and wet climatic gradient (desert grassland, pinyon-juniper woodland, ponderosa pine forest, and mixed conifer forest). Our goals were to determine whether ecosystem-specific, intraannual, and interactive responses to altered precipitation and warming are quantitatively important. Passive collectors and interceptors increased (+50% per event) and reduced (−30% per event) the quantity of precipitation delivered to experimental plant-soil mesocosms, and downward transfer along the elevation gradient warmed mesocosms by 1.8°C on average. Methane uptake in the colder and wetter ecosystems along the gradient decreased with increasing precipitation, especially during the wet season. The warmer and drier ecosystems, however, responded more strongly to warming, exhibiting less CH uptake with increasing temperature. We found no interaction between altered precipitation and warming in any ecosystem. Soil CH consumption in the laboratory was a strong predictor of ecosystem differences in field CH consumption, but was a poor predictor of the effects of climatic change observed in the field. Based on our results, future climate scenarios that are wet and warm will cause the largest reduction in terrestrial CH uptake across ecosystem types. [ABSTRACT FROM AUTHOR]

Despite increasing interest in the effects of climate change on soil processes, the response of nitrification to elevated CO2 remains unclear. Responses may depend on soil nitrogen (N) status, and inferences may vary depending on the methodological approach used. We investigated the interactive effects of elevated CO2 and inorganic N supply on gross nitrification (using 15N pool dilution) and potential nitrification (using nitrifying enzyme activity assays) in Dactylis glomerata mesocosms. We measured the responses of putative drivers of nitrification (NH production, NH consumption, and soil environmental conditions) and of potential denitrification, a process functionally linked to nitrification. Gross nitrification was insensitive to all treatments, whereas potential nitrification was higher in the high N treatment and was further stimulated by elevated CO2 in the high N treatment. Gross mineralization and NH consumption rates were also significantly increased in response to elevated CO2 in the high N treatment, while potential denitrification showed a significant increase in response to N addition. The discrepancy between the responses of gross and potential nitrification to elevated CO2 and inorganic N supply suggest that these measurements provide different information, and should be used as complementary approaches to understand nitrification response to global change. [ABSTRACT FROM AUTHOR]

Background: Forests can sequester carbon dioxide, thereby reducing atmospheric concentrations and slowing global warming. In the U.S., forest carbon stocks have increased as a result of regrowth following land abandonment and in-growth due to fire suppression, and they currently sequester approximately 10% of annual US emissions. This ecosystem service is recognized in greenhouse gas protocols and cap-and-trade mechanisms, yet forest carbon is valued equally regardless of forest type, an approach that fails to account for risk of carbon loss from disturbance. Results: Here we show that incorporating wildfire risk reduces the value of forest carbon depending on the location and condition of the forest. There is a general trend of decreasing riskscaled forest carbon value moving from the northern toward the southern continental U.S. Conclusion: Because disturbance is a major ecological factor influencing long-term carbon storage and is often sensitive to human management, carbon trading mechanisms should account for the reduction in value associated with disturbance risk. [ABSTRACT FROM AUTHOR]

Elevated CO2 can increase fine root biomass but responses of fine roots to exposure to increased CO2 over many years are infrequently reported. We investigated the effect of elevated CO2 on root biomass and N and P pools of a scrub-oak ecosystem on Merritt Island in Florida, USA, after 7 years of CO2 treatment. Roots were removed from 1-m deep soil cores in 10-cm increments, sorted into different categories (<0.25 mm, 0.25–1 mm, 1–2 mm, 2 mm to 1 cm, >1 cm, dead roots, and organic matter), weighed, and analyzed for N, P and C concentrations. With the exception of surface roots <0.25 mm diameter, there was no effect of elevated CO2 on root biomass. There was little effect on C, N, or P concentration or content with the exception of dead roots, and <0.25 mm and 1–2 mm diameter live roots at the surface. Thus, fine root mass and element content appear to be relatively insensitive to elevated CO2. In the top 10 cm of soil, biomass of roots with a diameter of <0.25 mm was depressed by elevated CO2. Elevated CO2 tended to decrease the mass and N content of dead roots compared to ambient CO2. A decreased N concentration of roots <0.25 mm and 1–2 mm in diameter under elevated CO2 may indicate reduced N supply in the elevated CO2 treatment. Our study indicated that elevated CO2 does not increase fine root biomass or the pool of C in fine roots. In fact, elevated CO2 tends to reduce biomass and C content of the most responsive root fraction (<0.25 mm roots), a finding that may have more general implications for understanding C input into the soil at higher atmospheric CO2 concentrations. [ABSTRACT FROM AUTHOR]

The effects of CO2 elevation on the dynamics of fine root (FR) mass and ectomycorrhizal (EM) mass and colonization were studied in situ in a Florida scrub oak system over four years of postfire regeneration. Soil cores were taken at five dates and sorted to assess the standing crop of ectomycorrhizal and fine roots. We used ingrowth bags to estimate the effects of elevated CO2 on production of EM roots and fine roots. Elevated CO2 tended to increase EM colonization frequency but did not affect EM mass nor FR mass in soil cores (standing mass). However, elevated CO2 strongly increased EM mass and FR mass in ingrowth bags (production), but it did not affect the EM colonization frequency therein. An increase in belowground production with unchanged biomass indicates that elevated CO2 may stimulate root turnover. The CO2-stimulated increase of belowground production was initially larger than that of aboveground production. The oaks may allocate a larger portion of resources to root/mycorrhizal production in this system in elevated rather than ambient CO2. [ABSTRACT FROM AUTHOR]

Investigates the effects of tree species on soil carbon and nitrogen mineralization in Siberian forests in Russia. Effect of grassland conversion to different tree species on microbial activities at different soil depths and their relationships to soil chemical properties; Nitrogen oxide reduction rate; Net nitrification and denitrification potential.

Examines the effects of tree species on soil chemical properties in a Siberian artificial afforestation in Russia. Carbon and nitrogen mineralization; Production and consumption of greenhouse gases; Soil acidity; Grassland conversion.

To date, most research that has examined the effect of elevated atmospheric carbon dioxide concentration ([CO2]) on litter decomposition has focused on changes in the leaf litter quality of individual species. Results from California grasslands indicate that other CO2 responses may have greater consequences for decomposition rates. For instance, CO2-driven changes in either species dominance or patterns of biomass allocation would alter both the quality and the position of grassland litter. We review the results from studies in California grasslands to identify the mechanisms that affect grassland litter decomposition. We use a simple calculation that integrates the results of two studies to identify three mechanisms that have the potential to substantially alter decomposition rates as the atmospheric [CO2] rises. [ABSTRACT FROM AUTHOR]

We measured soil bacteria, fungi, protozoa, nematodes, and biological activity in serpentine and sandstone annual grasslands after 4 years of exposure to elevated atmospheric CO2. Measurements were made during the early part of the season, when plants were in vegetative growth, and later in the season, when plants were approaching their maximum biomass. In general, under ambient CO2, bacterial biomass, total protozoan numbers, and numbers of bactivorous nematodes were similar in the two grasslands. Active and total fungal biomasses were higher on the more productive sandstone grassland compared to the serpentine. However, serpentine soils contained nearly twice the number of fungivorous nematodes compared to the sandstone, perhaps explaining the lower standing crop of fungal biomass in the serpentine and suggesting higher rates of energy flow through the fungal-based soil food web. Furthermore, root biomass in the surface soils of these grasslands is comparable, but the serpentine contains 6 times more phytophagous nematodes compared to the sandstone, indicating greater below-ground grazing pressure on plants in stressful serpentine soils. Elevated CO2 increased the biomass of active fungi and the numbers of flagellates in both grasslands during the early part of the season and increased the number of phytophagous nematodes in the serpentine. Elevated CO2 had no effect on the total numbers of bactivorous or fungivorous nematodes, but decreased the diversity of the nematode assemblage in the serpentine at both sampling dates. Excepting this reduction in nematode diversity, the effects of elevated CO2 disappeared later in the season as plants approached their maximum biomass. Elevated CO2 had no effect on total and active bacterial biomass, total fungal biomass, or the total numbers of amoebae and ciliates in either grassland during either sampling period. However, soil metabolic activity was higher in the sandstone grassland in the early season under elevated CO2, and elevated CO2 altered the patterns of use of individual carbon substrates in both grasslands at this time. Rates of substrate use were also significantly higher in the sandstone, indicating increased bacterial metabolic activity. These changes in soil microbiota are likely due to an increase in the flux of carbon from roots to soil in elevated CO2, as has been previously reported for these grasslands. Results presented here suggest that some of the carbon distributed below ground in response to elevated CO2 affects the soil microbial food web, but that these effects may be more pronounced during the early part of the growing season. [ABSTRACT FROM AUTHOR]

The affiliation of Jennifer Pett-Ridge with Life and Environmental Sciences Department, University of California Merced, Merced, CA was inadvertently omitted. The original version of this Article contained an error in the author affiliations. [Extracted from the article]

Discusses the fate of carbon in grasslands under carbon dioxide (CO2) enrichment. The potential to alter many ecosystem processes; The explanation for the imbalance observed in numerous CO2 experiments, where carbon increment from increased photosynthesis is greater than the increments in ecosystem carbon stocks; What is suggested by the shift in ecosystem carbon partitioning; Methods.

Increasing concentrations of atmospheric carbon dioxide (CO2) can affect biotic and abiotic conditions in soil, such as microbial activity and water content. In turn, these changes might be expected to alter the production and consumption of the important greenhouse gases nitrous oxide (N2O) and methane (CH4) (refs 2, 3). However, studies on fluxes of N2O and CH4 from soil under increased atmospheric CO2 have not been quantitatively synthesized. Here we show, using meta-analysis, that increased CO2 (ranging from 463 to 780 parts per million by volume) stimulates both N2O emissions from upland soils and CH4 emissions from rice paddies and natural wetlands. Because enhanced greenhouse-gas emissions add to the radiative forcing of terrestrial ecosystems, these emissions are expected to negate at least 16.6 per cent of the climate change mitigation potential previously predicted from an increase in the terrestrial carbon sink under increased atmospheric CO2 concentrations. Our results therefore suggest that the capacity of land ecosystems to slow climate warming has been overestimated. [ABSTRACT FROM AUTHOR]

Increasing atmospheric CO2 stimulates photosynthesis which can increase net primary production (NPP), but at longer timescales may not necessarily increase plant biomass. Here we analyse the four decade-long CO2-enrichment experiments in woody ecosystems that measured total NPP and biomass. CO2 enrichment increased biomass increment by 1.05 ± 0.26 kg C m−2 over a full decade, a 29.1 ± 11.7% stimulation of biomass gain in these early-secondary-succession temperate ecosystems. This response is predictable by combining the CO2 response of NPP (0.16 ± 0.03 kg C m−2 y−1) and the CO2-independent, linear slope between biomass increment and cumulative NPP (0.55 ± 0.17). An ensemble of terrestrial ecosystem models fail to predict both terms correctly. Allocation to wood was a driver of across-site, and across-model, response variability and together with CO2-independence of biomass retention highlights the value of understanding drivers of wood allocation under ambient conditions to correctly interpret and predict CO2 responses. It is unclear whether CO2-stimulation of photosynthesis can propagate through slower ecosystem processes and lead to long-term increases in terrestrial carbon. Here the authors show that CO2-stimulation of photosynthesis leads to a 30% increase in forest regrowth over a decade of CO2 enrichment. [ABSTRACT FROM AUTHOR]

A correction to the article "CO2 effects on plant nutrient concentration depend on plant functional group and available nitrogen: a meta-analysis" is presented.

Water drives the functioning of Earth's arid and semiarid lands. Drylands can obtain water from sources other than precipitation, yet little is known about how non-rainfall water inputs influence dryland communities and their activity. In particular, water vapor adsorption - movement of atmospheric water vapor into soil when soil air is drier than the overlying air - likely occurs often in drylands, yet its effects on ecosystem processes are not known. By adding 18O-enriched water vapor to the atmosphere of a closed system, we documented the conversion of water vapor to soil liquid water across a temperature range typical of arid ecosystems. This phenomenon rapidly increased soil moisture and stimulated microbial carbon (C) cycling, and the flux of water vapor to soil had a stronger impact than temperature on microbial activity. In a semiarid grassland, we also observed that non-rainfall water inputs stimulated microbial activity and C cycling. Together these data suggest that, during rain-free periods, atmospheric moisture in drylands may significantly contribute to variation in soil water content, thereby influencing ecosystem processes. The simple physical process of adsorption of water vapor to soil particles, forming liquid water, represents an overlooked but potentially important contributor to C cycling in drylands. [ABSTRACT FROM AUTHOR]

We examined the effects of growth carbon dioxide (CO2) concentration and soil nutrient availability on nitrogen (N) transformations and N trace gas fluxes in California grassland microcosms during early-season wet-up, a time when rates of N transformation and N trace gas flux are high. After plant senescence and summer drought, we simulated the first fall rains and examined N cycling. Growth at elevated CO2 increased root production and root carbon:nitrogen ratio. Under nutrient enrichment, elevated CO2 increasedmicrobial N immobilization during wet-up, leading to a 43% reductionin gross nitrification and a 55% reduction in NO emission from soil.Elevated CO2 increased microbial N immobilization at ambient nutrients, but did not alter nitrification or NO emission. Elevated CO2 did not alter soil emission of N2O at either nutrient level. Addition of NPK fertilizer (1:1:1) stimulated N mineralization and nitrification, leading to increased N2Oand NO emission from soil. The results of our study support a mechanistic model in which elevated CO2 alters soil N cycling and NO emission: increased root production and increased C:N ratio in elevated CO2 stimulate N immobilization, thereby decreasingnitrification and associated NO emission when nutrients are abundant. This model is consistent with our basic understanding of how C availability influences soil N cycling and thus may apply to many terrestrial ecosystems. [ABSTRACT FROM AUTHOR]

We investigated the effect of CO{sub}2{end} concentration and soil nutrient availability during growth on the subsequent decomposition and nitrogen (N) release from litter of four annual grasses that differin resource requirements and native habitat. Vulpia microstachys is a native grass found on California serpentine soils, whereas Avena fatua, Bromus hordaceus, and Lolium multiflorum are introduced grasses restricted to more fertile sandstone soils (Hobbs & Mooney 1991). Growth in elevated CO{sub}2{end} altered litter C:N ratio, decomposition, and N release, but the direction and magnitude of the changes differed among plant species and nutrient treatments. Elevated CO{sub}2{end} had relatively modest effects on C:N ratio of litter, increasing this ratio in Lolium roots (and shoots at high nutrients), but decreasing C:N ratio in Avena shoots. Growth of plants under elevated CO{sub}2{end} decreased the decomposition rate of Vulpia litter, but increased decomposition of Avena litter from the high-nutrient treatment. The impact of elevated CO{sub}2{end} on N loss from litter also differed among species, with Vulpia litter from high-CO{sub}2{end} plants releasing N more slowly than ambient-CO{sub}2{end} litter, whereas growth under elevated CO{sub}2{end} caused increased N loss from Avena litter. CO{sub}2{end} effects on N release in Lolium and Bromus depended on the nutrient regime in which plants were grown. There was no overall relationship between litter C:N ratio and decomposition rate orN release across species and treatments. Based on our study and the literature, we conclude that the effects of elevated CO{sub}2{end} ondecomposition and N release from litter are highly species-specific.These results do not support the hypothesis that CO{sub}2{end} effects on litter quality consistently lead to decreased nutrient availability in nutrient-limited ecosystems exposed to elevated CO{sub}2{end}. [ABSTRACT FROM AUTHOR]

Elevated CO2 can increase fine root biomass but responses of fine roots to exposure to increased CO2 over many years are infrequently reported. We investigated the effect of elevated CO2 on root biomass and N and P pools of a scrub-oak ecosystem on Merritt Island in Florida, USA, after 7 years of CO2 treatment. Roots were removed from 1-m deep soil cores in 10-cm increments, sorted into different categories (<0.25 mm, 0.25–1 mm, 1–2 mm, 2 mm to 1 cm, >1 cm, dead roots, and organic matter), weighed, and analyzed for N, P and C concentrations. With the exception of surface roots <0.25 mm diameter, there was no effect of elevated CO2 on root biomass. There was little effect on C, N, or P concentration or content with the exception of dead roots, and <0.25 mm and 1–2 mm diameter live roots at the surface. Thus, fine root mass and element content appear to be relatively insensitive to elevated CO2. In the top 10 cm of soil, biomass of roots with a diameter of <0.25 mm was depressed by elevated CO2. Elevated CO2 tended to decrease the mass and N content of dead roots compared to ambient CO2. A decreased N concentration of roots <0.25 mm and 1–2 mm in diameter under elevated CO2 may indicate reduced N supply in the elevated CO2 treatment. Our study indicated that elevated CO2 does not increase fine root biomass or the pool of C in fine roots. In fact, elevated CO2 tends to reduce biomass and C content of the most responsive root fraction (<0.25 mm roots), a finding that may have more general implications for understanding C input into the soil at higher atmospheric CO2 concentrations. [ABSTRACT FROM AUTHOR]

Increasing concentrations of atmospheric carbon dioxide (CO2) can affect biotic and abiotic conditions in soil, such as microbial activity and water content. In turn, these changes might be expected to alter the production and consumption of the important greenhouse gases nitrous oxide (N2O) and methane (CH4) (refs 2, 3). However, studies on fluxes of N2O and CH4 from soil under increased atmospheric CO2 have not been quantitatively synthesized. Here we show, using meta-analysis, that increased CO2 (ranging from 463 to 780 parts per million by volume) stimulates both N2O emissions from upland soils and CH4 emissions from rice paddies and natural wetlands. Because enhanced greenhouse-gas emissions add to the radiative forcing of terrestrial ecosystems, these emissions are expected to negate at least 16.6 per cent of the climate change mitigation potential previously predicted from an increase in the terrestrial carbon sink under increased atmospheric CO2 concentrations. Our results therefore suggest that the capacity of land ecosystems to slow climate warming has been overestimated. [ABSTRACT FROM AUTHOR]

Native soil carbon (C) can be lost in response to fresh C inputs, a phenomenon observed for decades yet still not understood. Using dual-stable isotope probing, we show that changes in the diversity and composition of two functional bacterial groups occur with this 'priming' effect. A single-substrate pulse suppressed native soil C loss and reduced bacterial diversity, whereas repeated substrate pulses stimulated native soil C loss and increased diversity. Increased diversity after repeated C amendments contrasts with resource competition theory, and may be explained by increased predation as evidenced by a decrease in bacterial 16S rRNA gene copies. Our results suggest that biodiversity and composition of the soil microbial community change in concert with its functioning, with consequences for native soil C stability. [ABSTRACT FROM AUTHOR]

The effects of CO2 elevation on the dynamics of fine root (FR) mass and ectomycorrhizal (EM) mass and colonization were studied in situ in a Florida scrub oak system over four years of postfire regeneration. Soil cores were taken at five dates and sorted to assess the standing crop of ectomycorrhizal and fine roots. We used ingrowth bags to estimate the effects of elevated CO2 on production of EM roots and fine roots. Elevated CO2 tended to increase EM colonization frequency but did not affect EM mass nor FR mass in soil cores (standing mass). However, elevated CO2 strongly increased EM mass and FR mass in ingrowth bags (production), but it did not affect the EM colonization frequency therein. An increase in belowground production with unchanged biomass indicates that elevated CO2 may stimulate root turnover. The CO2-stimulated increase of belowground production was initially larger than that of aboveground production. The oaks may allocate a larger portion of resources to root/mycorrhizal production in this system in elevated rather than ambient CO2. [ABSTRACT FROM AUTHOR]

Measuring the growth rate of a microorganism is a simple yet profound way to quantify its effect on the world. The absolute growth rate of a microbial population reflects rates of resource assimilation, biomass production and element transformation-some of the many ways in which organisms affect Earth's ecosystems and climate. Microbial fitness in the environment depends on the ability to reproduce quickly when conditions are favourable and adopt a survival physiology when conditions worsen, which cells coordinate by adjusting their relative growth rate. At the population level, relative growth rate is a sensitive metric of fitness, linking survival and reproduction to the ecology and evolution of populations. Techniques combining omics and stable isotope probing enable sensitive measurements of the growth rates of microbial assemblages and individual taxa in soil. Microbial ecologists can explore how the growth rates of taxa with known traits and evolutionary histories respond to changes in resource availability, environmental conditions and interactions with other organisms. We anticipate that quantitative and scalable data on the growth rates of soil microorganisms, coupled with measurements of biogeochemical fluxes, will allow scientists to test and refine ecological theory and advance process-based models of carbon flux, nutrient uptake and ecosystem productivity. Measurements of in situ microbial growth rates provide insights into the ecology of populations and can be used to quantitatively link microbial diversity to soil biogeochemistry., (© 2024. Springer Nature Limited.)