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Current advances in epilepsy treatment aim to personalize and responsively adjust treatment parameters to overcome patient heterogeneity in treatment efficiency. For tailoring treatment to the individual and the current brain state, tools are required that help to identify the patient- and time-point-specific parameters of epilepsy. Computational modeling has long proven its utility in gaining mechanistic insight. Recently, the technique has been introduced as a diagnostic tool to predict individual treatment outcomes. In this article, the Wendling model, an established computational model of epilepsy dynamics, is used to automatically classify epileptic brain states in intracranial EEG from patients (n = 4) and local field potential recordings from in vitro rat data (high-potassium model of epilepsy, n = 3). Five-second signal segments are classified to four types of brain state in epilepsy (interictal, preonset, onset, ictal) by comparing a vector of signal features for each data segment to four prototypical feature vectors obtained by Wendling model simulations. The classification result is validated against expert visual assessment. Model-driven brain state classification achieved a classification performance significantly above chance level (mean sensitivity 0.99 on model data, 0.77 on rat data, 0.56 on human data in a four-way classification task). Model-driven prototypes showed similarity with data-driven prototypes, which we obtained from real data for rats and humans. Our results indicate similar electrophysiological patterns of epileptic states in the human brain and the animal model that are well-reproduced by the computational model, and captured by a key set of signal features, enabling fully automated and unsupervised brain state classification in epilepsy. [ABSTRACT FROM AUTHOR]

Motor disability is a dominant and restricting symptom in multiple sclerosis, yet its neuroimaging correlates are not fully understood. We apply statistical and machine learning techniques on multimodal neuroimaging data to discriminate between multiple sclerosis patients and healthy controls and to predict motor disability scores in the patients. We examine the data of sixty-four multiple sclerosis patients and sixty-five controls, who underwent the MRI examination and the evaluation of motor disability scales. The modalities used comprised regional fractional anisotropy, regional grey matter volumes, and functional connectivity. For analysis, we employ two approaches: high-dimensional support vector machines run on features selected by Fisher Score (aiming for maximal classification accuracy), and low-dimensional logistic regression on the principal components of data (aiming for increased interpretability). We apply analogous regression methods to predict symptom severity. While fractional anisotropy provides the classification accuracy of 96.1% and 89.9% with both approaches respectively, including other modalities did not bring further improvement. Concerning the prediction of motor impairment, the low-dimensional approach performed more reliably. The first grey matter volume component was significantly correlated (R = 0.28-0.46, p < 0.05) with most clinical scales. In summary, we identified the relationship between both white and grey matter changes and motor impairment in multiple sclerosis. Furthermore, we were able to achieve the highest classification accuracy based on quantitative MRI measures of tissue integrity between patients and controls yet reported, while also providing a low-dimensional classification approach with comparable results, paving the way to interpretable machine learning models of brain changes in multiple sclerosis. [ABSTRACT FROM AUTHOR]

The human brain represents a complex computational system, the function and structure of which may be measured using various neuroimaging techniques focusing on separate properties of the brain tissue and activity. We capture the organization of white matter fibers acquired by diffusion-weighted imaging using probabilistic diffusion tractography. By segmenting the results of tractography into larger anatomical units, it is possible to draw inferences about the structural relationships between these parts of the system. This pipeline results in a structural connectivity matrix, which contains an estimate of connection strength among all regions. However, raw data processing is complex, computationally intensive, and requires expert quality control, which may be discouraging for researchers with less experience in the field. We thus provide brain structural connectivity matrices in a form ready for modelling and analysis and thus usable by a wide community of scientists. The presented dataset contains brain structural connectivity matrices together with the underlying raw diffusion and structural data, as well as basic demographic data of 88 healthy subjects. Measurement(s) Diffusion Weighted Imaging Technology Type(s) Magnetic Resonance Imaging Sample Characteristic - Organism Homo sapiens Sample Characteristic - Location Czech Republic [ABSTRACT FROM AUTHOR]

The human brain has the capacity to rapidly change state, and in epilepsy these state changes can be catastrophic, resulting in loss of consciousness, injury and even death. Theoretical interpretations considering the brain as a dynamical system suggest that prior to a seizure, recorded brain signals may exhibit critical slowing down, a warning signal preceding many critical transitions in dynamical systems. Using long-term intracranial electroencephalography (iEEG) recordings from fourteen patients with focal epilepsy, we monitored key signatures of critical slowing down prior to seizures. The metrics used to detect critical slowing down fluctuated over temporally long scales (hours to days), longer than would be detectable in standard clinical evaluation settings. Seizure risk was associated with a combination of these signals together with epileptiform discharges. These results provide strong validation of theoretical models and demonstrate that critical slowing down is a reliable indicator that could be used in seizure forecasting algorithms. Critical slowing (associated with increased variance and autocorrelation) can precede critical state transitions. Here, the authors show critical slowing can be used as a marker in seizure forecasting algorithms. [ABSTRACT FROM AUTHOR]

The statistical concept of Granger causality is defined by prediction improvement, i.e. the causing time series contains unique information about the future of the caused one. Recently we proposed extending this concept to bivariate diffusion processes by defining Granger causality for each point of the state space as the Granger causality of a process obtained by local linearisation. This provides a Granger causality map, well-defined at least in the vicinity of stable fixed points of the deterministic part of the dynamics. This extension has convenient properties, but carries several important limitations. In the current paper we show how the Granger causality of diffusion processes can be further generalized, incorporating in particular the concept of conditional causality. Moreover, we demonstrate the application potential to systems with a more complex attractor structure such as limit cycles or bistability of fixed points. [ABSTRACT FROM AUTHOR]

It is well established that the global climate is a complex phenomenon with dynamics driven by the interaction of a multitude of identifiable but intertwined subsystems. The identification, at some level, of these subsystems is an important step towards understanding climate dynamics. We present a method to determine the number of principal components representing non-random correlation structures in climate data, or components that cannot be generated by a surrogate model of independent stochastic processes replicating the auto-correlation structure of each time series. The purpose of the method is to automatically reduce the dimensionality of large climate datasets into spatially localised components suitable for further interpretation or, for example, for use as nodes in a complex network analysis of large-scale climate dynamics. We apply the method to two 2.5° resolution NCEP/NCAR reanalysis global datasets of monthly means: the sea level pressure (SLP) and the surface air temperature (SAT), and extract 60 components explaining 87 % variance and 68 components explaining 72 % variance, respectively. The obtained components are in agreement with previous results in that they recover many well-known climate modes previously identified using other approaches including regionally constrained principal component analysis. Selected SLP components are discussed in more detail with respect to their correlation with important climate indices and their relationship to other SLP and SAT components. Finally, we consider a subset of the obtained components that have not yet been explicitly identified by other authors but seem plausible in the context of regional climate observations discussed in literature. [ABSTRACT FROM AUTHOR]

Quantification of relations between measured variables of interest by statistical measures of dependence is a common step in analysis of climate data. The choice of dependence measure is key for the results of the subsequent analysis and interpretation. The use of linear Pearson's correlation coefficient is widespread and convenient. On the other side, as the climate is widely acknowledged to be a nonlinear system, nonlinear dependence quantification methods, such as those based on information-theoretical concepts, are increasingly used for this purpose. In this paper we outline an approach that enables well informed choice of dependence measure for a given type of data, improving the subsequent interpretation of the results. The presented multi-step approach includes statistical testing, quantification of the specific non-linear contribution to the interaction information, localization of areas with strongest nonlinear contribution and assessment of the role of specific temporal patterns, including signal nonstationarities. In detail we study the consequences of the choice of a general nonlinear dependence measure, namely mutual information, focusing on its relevance and potential alterations in the discovered dependence structure. We document the method by applying it to monthly mean temperature data from the NCEP/NCAR reanalysis dataset as well as the ERA dataset. We have been able to identify main sources of observed non-linearity in inter-node couplings. Detailed analysis suggested an important role of several sources of nonstationarity within the climate data. The quantitative role of genuine nonlinear coupling at monthly scale has proven to be almost negligible, providing quantitative support for the use of linear methods for monthly temperature data. [ABSTRACT FROM AUTHOR]

Object: Increases in low-frequency fluctuations (LFF, 0.01-0.1 Hz) of BOLD fMRI signal were observed during sedation and sleep. We tested the hypothesis that sedation-induced LFF increases may be mediated by increased head motion likely associated with these brain states. Materials and Methods: Twenty healthy volunteers were scanned in resting-state baseline and (15 thereof) in midazolam sedation condition. After standard preprocessing, LFF power was computed from average time series from 14 ROIs representing 5 functional networks (visual, motor, auditory, default mode, dorsal attentional). We assessed the effects of sedation on LFF and indirect effects of head motion (mean relative displacement) using mediation analysis. Results: Sedation increased LFF power with the indirect effect of motion on sedation-induced LFF significant for all networks. Global mean corrected data showed similar but weaker results: significant total effect for auditory, motor and visual; significant mediation for auditory and motor networks. Motion was strongly correlated with LFF even at baseline. Reported results were significant at p < 0.05. Conclusion: The study confirms that conscious sedation induces LFF increase, but demonstrates that this effect is mediated by increased head motion. Hence, caution in design and interpretation is recommended for studies comparing subjects or conditions differently predisposing to head motion. [ABSTRACT FROM AUTHOR]