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Soil microstructure, often defined as the combination of particle arrangement and bonding, can strongly influence the stiffness and strength of sedimentary deposits. As undisturbed soil sampling is a challenging task in fine-grained soils, seismic in situ testing is becoming increasingly more important to investigate its mechanical behaviour. The aim of this article is to evaluate the influences of sediment depositional age and structure-forming processes on the degree of soil structure development in Alpine deposits. Seismic in situ and laboratory testing comprising X-ray diffraction (XRD), scanning electron microscopy (SEM), pore water chemical analysis and hydrochemical modelling were executed at three Austrian test sites, namely Lokalbahn Salzburg, Rhesi and water reservoir Raggal. Based on the comparison of in situ shear wave velocities (VS,SDMT) with bender element results (VS,BE), executed on reconstituted soil specimens, it is shown that the Pleisto–Holocene-aged deposits are characterized by a VS,BE/VS,SDMT ratio of < 1, indicating the presence of microstructure. However, the youngest sediments (< 50 years) exhibit the weakest microstructure (VS,BE/VS,SDMT ≈ 1). The increase of soil structure with sediment age is represented by the updated normalized small-strain rigidity index, K*G, which is situated at the proposed transition between structured and unstructured soils (K*G = 330), ranging between 250 and 350, at all test sites. The development of microstructure can be attributed to the precipitation of calcite (CaCO3) cements in open pores, which strengthens the interparticle bonding between detrital quartz, feldspar, clay minerals and carbonate grains, subsequently reducing the soil's porosity with increasing sediment age. [ABSTRACT FROM AUTHOR]

Populations with spatially restricted gene flow are characterized by genetic differentiation that may be positively correlated with the geographic distance separating populations, a pattern known as isolation by distance (IBD). Here we examined the fine-scale genetic structure of 66 chum salmon ( Oncorhynchus keta) populations spawning in Alaska waterways and explored patterns of IBD using 90 nuclear and 3 mitochondrial single nucleotide polymorphisms. Estimating population structure of chum salmon in Alaska is of increasing concern because of fluctuating census sizes and the uncertain effects of harvest on specific populations. We hypothesized that IBD would be present because chum salmon spawn in coastal rivers that are distributed along a linear array and gene flow is spatially restricted due to homing. Evidence of very weak IBD was found throughout the region (R = 0.06, p < 0.0001) but the strength of the IBD relationship varied greatly over different spatial scales and geographic regions. Decomposed pairwise regression analyses identified nine outlier populations to regional IBD patterns, suggesting that geographic distance is not the only factor influencing genetic differentiation in the region. Instead, population structure appears to be heavily influenced by glacial history of the region and the presence of a glacial refugium on Kodiak Island. [ABSTRACT FROM AUTHOR]

A long-standing goal of evolutionary biology is to understand the factors that drive population divergence, local adaptation and speciation. In particular, the effect of selection against dispersers on gene flow and local adaptation has attracted interest, although empirical data on phenotypic characters of dispersers are scarce. Here, we used genetic and phenotypic data from beach and creek ecotypes of sockeye salmon (Oncorhynchus nerka) in Little Togiak Lake, Alaska, to examine the relationship between gene flow and phenotypic and genetic differentiation. Despite close geographic proximity, both genetic and phenotypic differentiation between beach and creek fish was high and significant in all sampling years, with beach males having deeper bodies than creek males. Strays, or fish that did not return to their natal sites to spawn as determined by genetic assignment, tended to morphologically resemble the fish in the population that they joined. Male strays from beaches to creeks were shallower bodied than other beach fish, and male strays from creeks to beaches were deeper bodied than other creek males. Our results indicated that selection against strays may be moderated by the strays’ phenotypic similarity to individuals in the recipient populations, but comparison of assignment results with long-term estimates of gene flow from FST still suggested that strays had low reproductive success.Heredity (2008) 101, 341–350; doi:10.1038/hdy.2008.59; published online 2 July 2008 [ABSTRACT FROM AUTHOR]

The coastal shrimp Crangon crangon is an ecologically and commercially important species but there is limited knowledge of its genetic population structure. We utilised amplified fragment length polymorphisms (AFLPs) to investigate population differentiation among eight sampling locations comprising paired sites from north- and south-western Britain, the eastern English Channel and the Baltic Sea. Initial AMOVA and cluster analysis suggested strong differentiation, but outlier analysis identified three loci that might be subject to selection, one of which showed significant latitudinal variation in allele frequencies. Following exclusion of these outlier loci, and also of a divergent, genetically-impoverished sample from the UK Bristol Channel, cluster analysis revealed three major groupings, corresponding to geographical regions: western Britain, the eastern English Channel and the Baltic Sea. AMOVA identified significant differentiation both within and among these regions, with similar variation explained by each hierarchical level. C. crangon shows greater genetic structuring than has been found in many decapod crustaceans studied to date, and our results are consistent with unstable population sizes and gene flow restricted by distance and probably also hydrographic features. Further investigation of temporal stability in population structure is required, but broad-scale homogeneity of fishery stocks should not be assumed. [ABSTRACT FROM AUTHOR]

Marine unicellular cyanobacteria are responsible for an estimated 20-40% of chlorophyll biomass and carbon fixation in the oceans. Here we have sequenced and analysed the 2.4-megabase genome of Synechococcus sp. strain WH8102, revealing some of the ways that these organisms have adapted to their largely oligotrophic environment. WH8102 uses organic nitrogen and phosphorus sources and more sodium-dependent transporters than a model freshwater cyanobacterium. Furthermore, it seems to have adopted strategies for conserving limited iron stores by using nickel and cobalt in some enzymes, has reduced its regulatory machinery (consistent with the fact that the open ocean constitutes a far more constant and buffered environment than fresh water), and has evolved a unique type of swimming motility. The genome of WH8102 seems to have been greatly influenced by horizontal gene transfer, partially through phages. The genetic material contributed by horizontal gene transfer includes genes involved in the modification of the cell surface and in swimming motility. On the basis of its genome, WH8102 is more of a generalist than two related marine cyanobacteria. [ABSTRACT FROM AUTHOR]

Genetic diversity and population structure of snapper (Pagrus auratus, Bloch and Schneider), a coastal demersal sparid fish, were determined using six nuclear microsatellite loci and SSCP (single strand conformational polymorphism) analysis of themitochondrial (mt) DNA D-loop in samples collected across the range of the species in New Zealand. Microsatellite data showed similar results to allozyme data collected in the late 1970s that found differentiation between the north-east and southern populations. In addition, an isolated population of snapper in Tasman Bay was identified. The two data sets provide evidence for the temporal stability of the genetic population structure of snapper over 22 years, with differentiation over relatively small spatial scales separated by oceanographic boundaries rather than isolation by distance. In contrast to nuclear markers, mtDNA did not reveal any significant genetic heterogeneity among samples. [ABSTRACT FROM AUTHOR]

Examines the population genetic structure using mitochondrial DNA restriction fragment length polymorphisms with universal primers. Identification of species and assays of intraspecific variation; Effects of marker variability on the power of statistical tests; Differences in the number of common haplotype frequencies.