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Postmortem magnetic resonance imaging (MRI) can provide a bridge between histological observations and the in vivo anatomy of the human brain. Approaches aimed at the co-registration of data derived from the two techniques are gaining interest. Optimal integration of the two research fields requires detailed knowledge of the tissue property requirements for individual research techniques, as well as a detailed understanding of the consequences of tissue fixation steps on the imaging quality outcomes for both MRI and histology. Here, we provide an overview of existing studies that bridge between state-of-the-art imaging modalities, and discuss the background knowledge incorporated into the design, execution and interpretation of postmortem studies. A subset of the discussed challenges transfer to animal studies as well. This insight can contribute to furthering our understanding of the normal and diseased human brain, and to facilitate discussions between researchers from the individual disciplines. [ABSTRACT FROM AUTHOR]

Mind wandering is ubiquitous in everyday life and has a pervasive and profound impact on task-related performance. A range of psychological processes have been proposed to underlie these performance-related decrements, including failures of executive control, volatile information processing, and shortcomings in selective attention to critical task-relevant stimuli. Despite progress in the development of such theories, existing descriptive analyses have limited capacity to discriminate between the theories. We propose a cognitive-model based analysis that simultaneously explains self-reported mind wandering and task performance. We quantitatively compare six explanations of poor performance in the presence of mind wandering. The competing theories are distinguished by whether there is an impact on executive control and, if so, how executive control acts on information processing, and whether there is an impact on volatility of information processing. Across two experiments using the sustained attention to response task, we find quantitative evidence that mind wandering is associated with two latent factors. Our strongest conclusion is that executive control is impaired: increased mind wandering is associated with reduced ability to inhibit habitual response tendencies. Our nuanced conclusion is that executive control deficits manifest in reduced ability to selectively attend to the information value of rare but task-critical events. [ABSTRACT FROM AUTHOR]

The growing interest in the human subcortex is accompanied by an increasing number of parcellation procedures to identify deep brain structures in magnetic resonance imaging (MRI) contrasts. Manual procedures continue to form the gold standard for parcellating brain structures and is used for the validation of automated approaches. Performing manual parcellations is a tedious process which requires a systematic and reproducible approach. For this purpose, we created a series of protocols for the anatomical delineation of 21 individual subcortical structures. The intelligibility of the protocols was assessed by calculating Dice similarity coefficients for ten healthy volunteers. In addition, dilated Dice coefficients showed that manual parcellations created using these protocols can provide high-quality training data for automated algorithms. Here, we share the protocols, together with three example MRI datasets and the created manual delineations. The protocols can be applied to create high-quality training data for automated parcellation procedures, as well as for further validation of existing procedures and are shared without restrictions with the research community. [ABSTRACT FROM AUTHOR]

Functional magnetic resonance imaging (fMRI) BOLD signal is commonly localized by using neuroanatomical atlases, which can also serve for region of interest analyses. Yet, the available MRI atlases have serious limitations when it comes to imaging subcortical structures: only 7% of the 455 subcortical nuclei are captured by current atlases. This highlights the general difficulty in mapping smaller nuclei deep in the brain, which can be addressed using ultra-high field 7 Tesla (T) MRI. The ventral tegmental area (VTA) is a subcortical structure that plays a pivotal role in reward processing, learning and memory. Despite the significant interest in this nucleus in cognitive neuroscience, there are currently no available, anatomically precise VTA atlases derived from 7 T MRI data that cover the full region of the VTA. Here, we first provide a protocol for multimodal VTA imaging and delineation. We then provide a data description of a probabilistic VTA atlas based on in vivo 7 T MRI data. [ABSTRACT FROM AUTHOR]

The subthalamic nucleus (STN) is successfully used as a surgical target for deep brain stimulation in the treatment of movement disorders. Interestingly, the internal structure of the STN is still incompletely understood. The objective of the present study was to investigate three-dimensional (3D) immunoreactivity patterns for 12 individual protein markers for GABA-ergic, serotonergic, dopaminergic as well as glutamatergic signaling. We analyzed the immunoreactivity using optical densities and created a 3D reconstruction of seven postmortem human STNs. Quantitative modeling of the reconstructed 3D immunoreactivity patterns revealed that the applied protein markers show a gradient distribution in the STN. These gradients were predominantly organized along the ventromedial to dorsolateral axis of the STN. The results are of particular interest in view of the theoretical underpinning for surgical targeting, which is based on a tripartite distribution of cognitive, limbic and motor function in the STN. [ABSTRACT FROM AUTHOR]

In the explicit cuing version of the task-switching paradigm, each individual task is indicated by a unique task cue. Consequently, a task switch is accompanied by a cue switch. Recently, it has been proposed that priming of cue encoding contributes to the empirically observed switch costs. This proposal was experimentally supported by using a 2:1 mapping of cues to tasks, so that a cue switch does not necessarily imply a task switch. The results indeed suggested a substantial contribution of “cue-switch costs” to task-switch costs. Here we argue that the 2:1 mapping potentially leads to an underestimation of “pure” task-switch costs. To support this argument, we report the results of a new study in which we used “transition cues” that indicate the identity of the current task based on the identity of the preceding task. This new type of cue allows a full factorial manipulation of cue switches and task switches because it includes the condition in which a cue repetition can also indicate a task switch (i.e., when the “switch” cue is repeated). We discuss the methodological implications and argue that the present approach has merits relative to the previously used 2:1 mapping of cues to tasks. [ABSTRACT FROM AUTHOR]

In theory, a comparison of two experimental effects requires a statistical test on their difference. In practice, this comparison is often based on an incorrect procedure involving two separate tests in which researchers conclude that effects differ when one effect is significant (P < 0.05) but the other is not (P > 0.05). We reviewed 513 behavioral, systems and cognitive neuroscience articles in five top-ranking journals (Science, Nature, Nature Neuroscience, Neuron and The Journal of Neuroscience) and found that 78 used the correct procedure and 79 used the incorrect procedure. An additional analysis suggests that incorrect analyses of interactions are even more common in cellular and molecular neuroscience. We discuss scenarios in which the erroneous procedure is particularly beguiling. [ABSTRACT FROM AUTHOR]

Currently little is known about structure-function mappings in the human subcortex. Here we present a large-scale automated meta-analysis on the literature to understand the structure-function mapping in the human subcortex. The results provide converging evidence into unique large scale structure-function mappings of the human subcortex based on their functional and anatomical similarity. [ABSTRACT FROM AUTHOR]