1. A microsampling method for genotyping coral symbionts.
- Author
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Kemp, D. W., Fitt, W. K., and Schmidt, G. W.
- Subjects
CORALS ,SYMBIOSIS ,CORAL reef ecology ,CORAL reefs & islands ,RECOMBINANT DNA ,POLYMERASE chain reaction ,GEL electrophoresis ,MARINE biology ,AQUATIC biology - Abstract
Genotypic characterization of Symbiodinium symbionts in hard corals has routinely involved coring, or the removal of branches or a piece of the coral colony. These methods can potentially underestimate the complexity of the Symbiodinium community structure and may produce lesions. This study demonstrates that microscale sampling of individual coral polyps provided suYcient DNA for identifying zooxanthellae clades by RFLP analyses, and subclades through the use of PCR amplification of the ITS-2 region of rDNA and denaturing-gradient gel electrophoresis. Using this technique it was possible to detect distinct ITS-2 types of Symbiodinium from two or three adjacent coral polyps. These methods can be used to intensely sample coral-symbiont population/communities while causing minimal damage. The effectiveness and fine scale capabilities of these methods were demonstrated by sampling and identifying phylotypes of Symbiodinium clades A, B, and C that co-reside within a single Montastraea faveolata colony. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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