Search

Background and aims: Hakea prostrata (Proteaceae) is a highly phosphorus-use-efficient plant native to southwest Australia. It maintains a high photosynthetic rate at low leaf phosphorus (P) and exhibits delayed leaf greening, a convergent adaptation that increases nutrient-use efficiency. This study aimed to provide broad physiological and gene expression profiles across leaf development, uncovering pathways leading from young leaves as nutrient sinks to mature leaves as low-nutrient, energy-transducing sources. Methods: To explore gene expression underlying delayed greening, we analysed a de novo transcriptome for H. prostrata across five stages of leaf development. Photosynthesis and respiration rates, and foliar pigment, P and nitrogen (N) concentrations were determined, including the division of P into five biochemical fractions. Key results: Transcripts encoding functions associated with leaf structure generally decreased in abundance across leaf development, concomitant with decreases in foliar concentrations of 85% for anthocyanins, 90% for P and 70% for N. The expression of genes associated with photosynthetic function increased during or after leaf expansion, in parallel with increases in photosynthetic pigments and activity, much later in leaf development than in species that do not have delayed greening. As leaves developed, transcript abundance for cytosolic and mitochondrial ribosomal proteins generally declined, whilst transcripts for chloroplast ribosomal proteins increased. Conclusions: There was a much longer temporal separation of leaf cell growth from chloroplast development in H. prostrata than is found in species that lack delayed greening. Transcriptome-guided analysis of leaf development in H. prostrata provided insight into delayed greening as a nutrient-saving strategy in severely phosphorus-impoverished landscapes. [ABSTRACT FROM AUTHOR]

Background and Aims Pinus massoniana: Lamb. is an important conifer forestry species in south China, but soil fertility has declined over time in monoculture plantations. Knowledge about how P. massoniana uses phosphorus (P) by distributing it among five biochemical fractions and how intercropping with broadleaf Castanopsis hystrix alters that pattern may inform long-term plantation management. Methods: We studied a single P. massoniana plantation that was split in half into a monoculture and a P. massoniana / C. hystrix intercropped plantation 25 years after establishment. We measured photosynthesis and leaf concentrations of total P, P allocated to five chemical fractions and total nitrogen (N). We also measured soil N concentrations. Results: Intercropping C. hystrix with 25-year-old P. massoniana for a further 34 years had no significant impact on P. massoniana total stem volume, although intercropped P. massoniana trees were 5 m taller. Intercropping with C. hystrix increased timber biomass due to the additional C. hystrix stems. Growth of C. hystrix was likely more limited by P than that of P. massoniana in both plantations. Total P concentration and its allocation among fractions declined with increasing leaf age, but differed in the two species. Leaf P-resorption efficiency in intercropped P. massoniana was 79%, which was about 15% greater than that in P. massoniana monoculture and in the intercropped C. hystrix. The greater P-resorption efficiency in intercropped P. massoniana than in monoculture was due to greater mobilization of P from all fractions, except phospholipids. Bulk soil N concentration was 50% greater in the intercropped plantation than in monoculture. Conclusion: Adding C. hystrix to an P. massoniana plantation was effective at increasing wood yield without compromising productivity of P. massoniana. [ABSTRACT FROM AUTHOR]

Background and aims: In extremely low-phosphorus (P) environments, most Proteaceae exude carboxylates from cluster roots. These carboxylates mobilise inorganic P which leads to a relatively high leaf manganese concentration ([Mn]). However, we found that Adenanthos cygnorum (Proteaceae) in a low-P habitat did not invariably have a high leaf [Mn] in south-western Australia. We aimed to explore how A. cygnorum acquires P in severely P-impoverished habitats. Methods: We determined soil P concentrations and leaf [Mn] of A. cygnorum growing within 1 m and more than 10 m away from other large Proteaceae. We also grew plants in a glasshouse to determine its root carboxylate exudation and rhizosheath phosphatase activity. Results: Adenanthos cygnorum did not produce functional cluster roots. It depended on carboxylates released by a P-mobilising neighbour, Banksia attenuata (Proteaceae), to acquire P when growing in severely P-impoverished soil (< 8 mg P kg− 1 dry soil). In slightly less P-impoverished soil (> 11 mg P kg− 1 dry soil), phosphatases released by A. cygnorum hydrolysed sufficient organic P that was relatively mobile. Conclusion: The reliance on facilitation of P acquisition in A cygnorum depended strongly on location. We demonstrated the exudation of phosphatases, which mobilise inorganic P; this P was adequate for growth when there was sufficient organic P in soil. Facilitation of P acquisition by B. attenuata allowed A. cygnorum to extend its range into severely P-impoverished habitats where it cannot exist without facilitation. This knowledge provides a better understanding of the diversity of P-acquisition strategies in severely P-impoverished environments. [ABSTRACT FROM AUTHOR]

Identifying homologs is an important process in the analysis of genetic patterns underlying traits and evolutionary relationships among species. Analysis of gene families is often used to form and support hypotheses on genetic patterns such as gene presence, absence, or functional divergence which underlie traits examined in functional studies. These analyses often require precise identification of all members in a targeted gene family. Manual pipelines where homology search and orthology assignment tools are used separately are the most common approach for identifying small gene families where accurate identification of all members is important. The ability to curate sequences between steps in manual pipelines allows for simple and precise identification of all possible gene family members. However, the validity of such manual pipeline analyses is often decreased by inappropriate approaches to homology searches including too relaxed or stringent statistical thresholds, inappropriate query sequences, homology classification based on sequence similarity alone, and low-quality proteome or genome sequences. In this article, we propose several approaches to mitigate these issues and allow for precise identification of gene family members and support for hypotheses linking genetic patterns to functional traits. [ABSTRACT FROM AUTHOR]

Aims: South-western Australia has some of the most phosphorus (P)-impoverished soils in the world. Hakea prostrata (Proteaceae) has nitrate (NO3−)-uptake restraint, associated with its high P-use efficiency. This research explores how common this trait is in other Proteaceae and in co-occurring plant species in south-western Australia. Methods: Banksia attenuata (Proteaceae), B. telmatiaea (Proteaceae), Melaleuca seriata (Myrtaceae) and M. rhaphiophylla (Myrtaceae) were grown with no NO3−, Medium (500 µM) NO3− or High (2500 µM) NO3− treatments with no other source of nitrogen (N). Plants were harvested after treatments. Leaf nitrate and phosphate concentrations were determined, as well as biomass, total N and total P concentrations of leaves, stems and roots separately. Results: Banksia attenuata, B. telmatiaea and M. seriata had similar total N content when supplied with High NO3− as they did when supplied with Medium NO3−. All four species had the same low leaf NO3−-N concentration in High and Medium NO3− treatments, no more than 6% of leaf total N. All species had similar leaf NO3− concentrations as those of plants growing in their natural habitat where the available soil nitrate concentration was much lower. These results are in sharp contrast with plants that are typically studied, for example Arabidopsis thaliana. Conclusions: All four species exhibited NO3−-uptake restraint to different degrees. Nitrate-uptake restraint appears a convergent trait common to many species that evolved in severely P-impoverished landscapes, allowing them to be more P-efficient. [ABSTRACT FROM AUTHOR]

Background and aims: Plant species richness increases with declining soil phosphorus (P) availability, especially for Proteaceae in old infertile landscapes. This difference in richness might be attributed to faster diversification in lineages adapted to P-impoverished soils, i.e. species that possess specialised P-acquisition strategies, and have lower leaf P concentration ([P]) and higher seed [P]. Alternatively, a longer time for species accumulation might contribute to high species richness in low-P environments due to the geological stability of the landscapes in which they evolved. Methods: We assessed differences in diversification of Proteaceae in P-impoverished vs. nutrient-rich environments and whether these were linked to adaptations to P-impoverished soils. We explored mature leaf and seed [P] and investigated how these traits changed over the evolutionary history of the family, and within two species-rich genera (Banksia, Hakea). Results: Faster diversification was correlated with lower leaf and higher seed [P] for species-rich genera across the Proteaceae. For Banksia and Hakea, diversification rates peaked at relatively low leaf [P], but not at the lowest leaf [P]. Ancestral state reconstructions indicated that low leaf [P] is a trait that was likely present in the early evolution of the Proteaceae, with recent transitions to higher leaf [P] across several species-poor rainforest genera. Conclusions: Diversification of Proteaceae correlated strongly with P-related traits. In an evolutionary context, functional cluster roots, low leaf [P] and high seed [P] were likely key innovations allowing diversification. Selection for low leaf [P] early in the evolutionary history of Proteaceae pre-adapted ancestors of this family to diversify into oligotrophic environments. We discuss how our findings are likely relevant for understanding diversification dynamics of other plant families that occur in P-impoverished environments. [ABSTRACT FROM AUTHOR]

Genes encoding dextranolytic enzymes were isolated fromPaenibacillusstrains Dex40-8 and Dex50-2. Single, similar but non-identicaldex1genes were isolated from each strain, and a more divergentdex2gene was isolated from strain Dex50-2. The protein deduced from the Dex40-8dex1gene sequence had 716 amino acids, with a predictedMr of 80.8 kDa. The proteins deduced from the Dex50-2dex1anddex2gene sequences had 905 and 596 amino acids, with predictedMr of 100.1 kDa and 68.3 kDa, respectively. The deduced amino acid sequences of all three dextranolytic proteins had similarity to family 66 glycosyl hydrolases and were predicted to possess cleavable N-terminal signal peptides. Homology searches suggest that the Dex40-8 and Dex50-2 Dex1 proteins have one and two copies, respectively, of a carbohydrate-binding module similar to CBM_4_9 (pfam02018.11). The Dex50-2 Dex2 deduced amino acid sequence had highest sequence similarity to thermotolerant dextranases from thermophilicPaenibacillusstrains, while the Dex40-8 and Dex50-2 Dex1 deduced protein sequences formed a distinct sequence clade among the family 66 proteins. Examination of sevenPaenibacillusstrains, using a polymerase chain reaction-based assay, indicated that multiple family 66 genes are common within this genus. The three recombinant proteins expressed inEscherichia colipossessed dextranolytic activity and were able to convert ethanol-insoluble blue dextran into an ethanol-soluble product, indicating they are endodextranases (EC 3.2.1.11). The reaction catalysed by each enzyme had a distinct temperature and pH dependence. [ABSTRACT FROM AUTHOR]

ThermotolerantPaenibacillusstrain Dex70-1B and unidentified strain Dex70-34 produce thermoactive dextran-degrading enzymes. Plasmid-based genomic DNA libraries constructed from mixed bacterial cultures containing Dex70-1B or Dex70-34 were screened for the ability to confer dextranolytic activity at 70°C ontoEscherichia coli.One gene, designateddex1,was isolated from each strain. The Dex70-1B and Dex70-34dex1gene sequences were non-identical, and encoded proteins containing 597 (Mr 68.6 kDa) and 600 amino acids (Mr 69.2 kDa), respectively. The Dex1 amino acid sequences were most similar to one another, and formed a new clade among the family 66 glycosyl hydrolase sequences. Expression of the Dex1 proteins inE. coliproduced dextranolytic activity that converted ethanol-insoluble blue dextran into an ethanol-soluble form, suggestive of endodextranases (EC 3.2.1.11). Both enzymes were most active at about 60°C and pH 5.5, and retained more than 70% maximal activity after incubation at 57°C for 9.5 h in the absence of substrate. [ABSTRACT FROM AUTHOR]

Background and aims: Phosphorus (P) is an essential plant nutrient and integral for crop yield. However, plants adapted to P-impoverished environments, such as Hakea prostrata (Proteaceae), are often sensitive to P supplies that would be beneficial to other plants. The strategies for phosphate uptake and transport in P-sensitive species have received little attention.Using a recently-assembled transcriptome of H. prostrata, we identified 10 putative members of the PHOSPHATE TRANSPORTER1 (PHT1) gene family, which is responsible for inorganic phosphate (Pi) uptake and transport in plants. We examined plant growth, organ P concentrations and the transcript levels for the eight PHT1 members that were expressed in roots of H. prostrata at Pi supplies ranging from P-impoverished to P-excess.Hakea prostrata plants suppressed cluster root growth above ecologically-relevant Pi supplies, whilst non-cluster root mass ratios were constant. Root P concentrations increased with increasing Pi supply. Of the eight H. prostrata PHT1 genes tested, four had relatively high transcript amounts in young roots suggesting important roles in Pi uptake; however, a maximum five-fold difference in expression between P-impoverished and P-excess conditions indicated a low P-responsiveness for these genes. The HpPHT1;8 and HpPHT1;9 genes were paralogous to Pi-responsive Arabidopsis thaliana PHT1;8 and PHT1;9 orthologues involved in root-to-shoot translocation of P, but only HpPHT1;9 was P responsive.An attenuated ability of H. prostrata to regulate PHT1 expression in response to Pi supply is likely responsible for its low capacity to control P uptake and contributes to its high P sensitivity.Methods: Phosphorus (P) is an essential plant nutrient and integral for crop yield. However, plants adapted to P-impoverished environments, such as Hakea prostrata (Proteaceae), are often sensitive to P supplies that would be beneficial to other plants. The strategies for phosphate uptake and transport in P-sensitive species have received little attention.Using a recently-assembled transcriptome of H. prostrata, we identified 10 putative members of the PHOSPHATE TRANSPORTER1 (PHT1) gene family, which is responsible for inorganic phosphate (Pi) uptake and transport in plants. We examined plant growth, organ P concentrations and the transcript levels for the eight PHT1 members that were expressed in roots of H. prostrata at Pi supplies ranging from P-impoverished to P-excess.Hakea prostrata plants suppressed cluster root growth above ecologically-relevant Pi supplies, whilst non-cluster root mass ratios were constant. Root P concentrations increased with increasing Pi supply. Of the eight H. prostrata PHT1 genes tested, four had relatively high transcript amounts in young roots suggesting important roles in Pi uptake; however, a maximum five-fold difference in expression between P-impoverished and P-excess conditions indicated a low P-responsiveness for these genes. The HpPHT1;8 and HpPHT1;9 genes were paralogous to Pi-responsive Arabidopsis thaliana PHT1;8 and PHT1;9 orthologues involved in root-to-shoot translocation of P, but only HpPHT1;9 was P responsive.An attenuated ability of H. prostrata to regulate PHT1 expression in response to Pi supply is likely responsible for its low capacity to control P uptake and contributes to its high P sensitivity.Key results: Phosphorus (P) is an essential plant nutrient and integral for crop yield. However, plants adapted to P-impoverished environments, such as Hakea prostrata (Proteaceae), are often sensitive to P supplies that would be beneficial to other plants. The strategies for phosphate uptake and transport in P-sensitive species have received little attention.Using a recently-assembled transcriptome of H. prostrata, we identified 10 putative members of the PHOSPHATE TRANSPORTER1 (PHT1) gene family, which is responsible for inorganic phosphate (Pi) uptake and transport in plants. We examined plant growth, organ P concentrations and the transcript levels for the eight PHT1 members that were expressed in roots of H. prostrata at Pi supplies ranging from P-impoverished to P-excess.Hakea prostrata plants suppressed cluster root growth above ecologically-relevant Pi supplies, whilst non-cluster root mass ratios were constant. Root P concentrations increased with increasing Pi supply. Of the eight H. prostrata PHT1 genes tested, four had relatively high transcript amounts in young roots suggesting important roles in Pi uptake; however, a maximum five-fold difference in expression between P-impoverished and P-excess conditions indicated a low P-responsiveness for these genes. The HpPHT1;8 and HpPHT1;9 genes were paralogous to Pi-responsive Arabidopsis thaliana PHT1;8 and PHT1;9 orthologues involved in root-to-shoot translocation of P, but only HpPHT1;9 was P responsive.An attenuated ability of H. prostrata to regulate PHT1 expression in response to Pi supply is likely responsible for its low capacity to control P uptake and contributes to its high P sensitivity.Conclusions: Phosphorus (P) is an essential plant nutrient and integral for crop yield. However, plants adapted to P-impoverished environments, such as Hakea prostrata (Proteaceae), are often sensitive to P supplies that would be beneficial to other plants. The strategies for phosphate uptake and transport in P-sensitive species have received little attention.Using a recently-assembled transcriptome of H. prostrata, we identified 10 putative members of the PHOSPHATE TRANSPORTER1 (PHT1) gene family, which is responsible for inorganic phosphate (Pi) uptake and transport in plants. We examined plant growth, organ P concentrations and the transcript levels for the eight PHT1 members that were expressed in roots of H. prostrata at Pi supplies ranging from P-impoverished to P-excess.Hakea prostrata plants suppressed cluster root growth above ecologically-relevant Pi supplies, whilst non-cluster root mass ratios were constant. Root P concentrations increased with increasing Pi supply. Of the eight H. prostrata PHT1 genes tested, four had relatively high transcript amounts in young roots suggesting important roles in Pi uptake; however, a maximum five-fold difference in expression between P-impoverished and P-excess conditions indicated a low P-responsiveness for these genes. The HpPHT1;8 and HpPHT1;9 genes were paralogous to Pi-responsive Arabidopsis thaliana PHT1;8 and PHT1;9 orthologues involved in root-to-shoot translocation of P, but only HpPHT1;9 was P responsive.An attenuated ability of H. prostrata to regulate PHT1 expression in response to Pi supply is likely responsible for its low capacity to control P uptake and contributes to its high P sensitivity. [ABSTRACT FROM AUTHOR]

Background: Unveiling the diversity of plant strategies to acquire and use phosphorus (P) is crucial to understand factors promoting their coexistence in hyperdiverse P-impoverished communities within fire-prone landscapes such as in cerrado (South America), fynbos (South Africa) and kwongan (Australia).We explore the diversity of P-acquisition strategies, highlighting one that has received little attention: acquisition of P following fires that temporarily enrich soil with P. This strategy is expressed by fire ephemerals as well as fast-resprouting perennial shrubs. A plant’s leaf manganese concentration ([Mn]) provides significant clues on P-acquisition strategies. High leaf [Mn] indicates carboxylate-releasing P-acquisition strategies, but other exudates may play the same role as carboxylates in P acquisition. Intermediate leaf [Mn] suggests facilitation of P acquisition by P-mobilising neighbours, through release of carboxylates or functionally similar compounds. Very low leaf [Mn] indicates that carboxylates play no immediate role in P acquisition. Release of phosphatases also represents a P-mining strategy, mobilising organic P. Some species may express multiple strategies, depending on time since germination or since fire, or on position in the landscape. In severely P-impoverished landscapes, photosynthetic P-use efficiency converges among species. Efficient species exhibit rapid rates of photosynthesis at low leaf P concentrations. A high P-remobilisation efficiency from senescing organs is another way to use P efficiently, as is extended longevity of plant organs.Many P-acquisition strategies coexist in P-impoverished landscapes, but P-use strategies tend to converge. Common strategies of which we know little are those expressed by ephemeral or perennial species that are the first to respond after a fire. We surmise that carboxylate-releasing P-mobilising strategies are far more widespread than envisaged so far, and likely expressed by species that accumulate metals, exemplified by Mn, metalloids, such as selenium, fluorine, in the form of fluoroacetate, or silicon. Some carboxylate-releasing strategies are likely important to consider when restoring sites in biodiverse regions as well as in cropping systems on P-impoverished or strongly P-sorbing soils, because some species may only be able to establish themselves next to neighbours that mobilise P.Scope: Unveiling the diversity of plant strategies to acquire and use phosphorus (P) is crucial to understand factors promoting their coexistence in hyperdiverse P-impoverished communities within fire-prone landscapes such as in cerrado (South America), fynbos (South Africa) and kwongan (Australia).We explore the diversity of P-acquisition strategies, highlighting one that has received little attention: acquisition of P following fires that temporarily enrich soil with P. This strategy is expressed by fire ephemerals as well as fast-resprouting perennial shrubs. A plant’s leaf manganese concentration ([Mn]) provides significant clues on P-acquisition strategies. High leaf [Mn] indicates carboxylate-releasing P-acquisition strategies, but other exudates may play the same role as carboxylates in P acquisition. Intermediate leaf [Mn] suggests facilitation of P acquisition by P-mobilising neighbours, through release of carboxylates or functionally similar compounds. Very low leaf [Mn] indicates that carboxylates play no immediate role in P acquisition. Release of phosphatases also represents a P-mining strategy, mobilising organic P. Some species may express multiple strategies, depending on time since germination or since fire, or on position in the landscape. In severely P-impoverished landscapes, photosynthetic P-use efficiency converges among species. Efficient species exhibit rapid rates of photosynthesis at low leaf P concentrations. A high P-remobilisation efficiency from senescing organs is another way to use P efficiently, as is extended longevity of plant organs.Many P-acquisition strategies coexist in P-impoverished landscapes, but P-use strategies tend to converge. Common strategies of which we know little are those expressed by ephemeral or perennial species that are the first to respond after a fire. We surmise that carboxylate-releasing P-mobilising strategies are far more widespread than envisaged so far, and likely expressed by species that accumulate metals, exemplified by Mn, metalloids, such as selenium, fluorine, in the form of fluoroacetate, or silicon. Some carboxylate-releasing strategies are likely important to consider when restoring sites in biodiverse regions as well as in cropping systems on P-impoverished or strongly P-sorbing soils, because some species may only be able to establish themselves next to neighbours that mobilise P.Conclusions: Unveiling the diversity of plant strategies to acquire and use phosphorus (P) is crucial to understand factors promoting their coexistence in hyperdiverse P-impoverished communities within fire-prone landscapes such as in cerrado (South America), fynbos (South Africa) and kwongan (Australia).We explore the diversity of P-acquisition strategies, highlighting one that has received little attention: acquisition of P following fires that temporarily enrich soil with P. This strategy is expressed by fire ephemerals as well as fast-resprouting perennial shrubs. A plant’s leaf manganese concentration ([Mn]) provides significant clues on P-acquisition strategies. High leaf [Mn] indicates carboxylate-releasing P-acquisition strategies, but other exudates may play the same role as carboxylates in P acquisition. Intermediate leaf [Mn] suggests facilitation of P acquisition by P-mobilising neighbours, through release of carboxylates or functionally similar compounds. Very low leaf [Mn] indicates that carboxylates play no immediate role in P acquisition. Release of phosphatases also represents a P-mining strategy, mobilising organic P. Some species may express multiple strategies, depending on time since germination or since fire, or on position in the landscape. In severely P-impoverished landscapes, photosynthetic P-use efficiency converges among species. Efficient species exhibit rapid rates of photosynthesis at low leaf P concentrations. A high P-remobilisation efficiency from senescing organs is another way to use P efficiently, as is extended longevity of plant organs.Many P-acquisition strategies coexist in P-impoverished landscapes, but P-use strategies tend to converge. Common strategies of which we know little are those expressed by ephemeral or perennial species that are the first to respond after a fire. We surmise that carboxylate-releasing P-mobilising strategies are far more widespread than envisaged so far, and likely expressed by species that accumulate metals, exemplified by Mn, metalloids, such as selenium, fluorine, in the form of fluoroacetate, or silicon. Some carboxylate-releasing strategies are likely important to consider when restoring sites in biodiverse regions as well as in cropping systems on P-impoverished or strongly P-sorbing soils, because some species may only be able to establish themselves next to neighbours that mobilise P. [ABSTRACT FROM AUTHOR]