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The aim of this experimental study was to evaluate the influence of anaerobic digestion and storage on indicator microorganisms in swine and dairy excreta. Samples were collected every 90 days for 15 months at eight farms, four pig, and four dairy farms, four of them having a biogas plant. Moreover, to evaluate storage effects on samples, 20 l of manure and slurry taken at each farm (digested manure only in farms with a biogas plant) were stored in a controlled climatic chamber at 18 °C, for 6 months. The bacterial load and the chemical-physical characteristics of excreta were evaluated at each sampling time, stored slurry, and manure were sampled and analyzed every 2 months. A high variability of the concentration of bacteria in the different excreta types was observed during the experiment, mainly depending on the type and time of treatment. No sample revealed either the presence of Escherichia coli O157:H7 or of Salmonella, usually linked to the temporary rearing of infected animals in facilities. Anaerobic digestion and storage affected in a significant way the reduction of indicator bacteria like lactobacilli, coliforms, and streptococci. Anaerobic digestion lowered coliforms in pig slurry (− 2.80 log, P < 0.05), streptococci in dairy manure (− 2.44 log, P < 0.001) and in pig slurry (− 1.43 log, P < 0.05), and lactobacilli in pig slurry (− 3.03 log, P < 0.05). Storage lowered coliforms and the other indicators counts, in particular in fresh wastes, while clostridia did not show a reduction in concentration. [ABSTRACT FROM AUTHOR]

The chemical, physical and microbial properties of thermophilic composts and vermicomposts were compared using the same municipal green waste-based feedstocks: (i) municipal green waste alone, (ii) 75 % municipal green waste/25 % green garden waste and (iii) 75 % municipal green waste/25 % cattle manure. Temperatures reached 37 °C during composting of municipal green waste alone but when garden waste or cattle manure were added, temperatures reached 47 and 52 °C, respectively. At the end of vermicomposting (using Eisenia fetida), the number of earthworms present was greater than that added for the cattle manure-amended feedstock but much less for both the garden waste and municipal green waste alone treatments. The products formed in all treatments generally fell within suggested maturity indices for composts. Greater organic matter decomposition occurred during composting than vermicomposting resulting in composts having a significantly lower organic C content and a greater content of total N, extractable Mg, K, Na, P, and mineral N, a higher EC and a lower C/N ratio than the vermicomposts. For all three feedstocks, vermicomposts had a lower bulk density and greater total porosity and macroporosity than composts. For the garden waste- and cattle manure-amended feedstocks, vermicomposts had a higher microbial biomass C than the composts and for all three feedstocks, basal respiration and metabolic quotient were greatest for vermicomposts. It was concluded that composting is a robust process suitable for treatment of a range of organic wastes but, because of the nutritional requirements of the earthworms, vermicomposting is a much less robust and was only suitable for the cattle manure-amended feedstock. [ABSTRACT FROM AUTHOR]

In this study, we conducted a meta-analysis on 16S rRNA gene sequences of bovine fecal origin that are publicly available in the RDP database. A total of 13,663 sequences including 603 isolate sequences were identified in the RDP database (Release 11, Update 1), where 13,447 sequences were assigned to 10 phyla, 17 classes, 28 orders, 59 families, and 110 genera, while the remaining 216 sequences could not be assigned to a known phylum. Firmicutes and Bacteroidetes were the first and the second predominant phyla, respectively. About 41 % of the total sequences could not be assigned to a known genus. The total sequences were assigned to 1252 OTUs at 97 % sequence similarity. A small number of OTUs shared among datasets indicate that fecal bacterial communities of cattle are greatly affected by various factors, specifically diet. This study may guide future studies to further analyze fecal bacterial communities of cattle. [ABSTRACT FROM AUTHOR]

Objectives: To acquire a thermostable xylanase, that is suitable for xylooligosaccharide production from pretreated corncobs, the metagenomic method was used to obtain the gene from an uncultured environmental microorganism. Results: A thermostable xylanase-encoding gene ( xyn10CD18) was cloned directly from the metagenomic DNA of cow dung compost. When xyn10CD18 was expressed in Bacillus megaterium MS941, extracellular xylansae activity at 106 IU/ml was achieved. The purified recombinant Xyn10CD18 was optimally active at pH 7 and 75 °C as measured over 10 min. It retained over 55 % of its initial activity at 70 °C and pH 7 after 24 h. Its action on birchwood xylan for 18 h liberated xylooligosaccharides with 2°-4° of polymerization, with xylobiose and xylotetraose as the main products. When pretreated corncobs were hydrolyzed by Xyn10CD18 for 18 h, the xylooligosaccharides (DP 2-4) products increased to 80 % and the xylose was just increased by 3 %. Conclusion: Xyn10CD18 is a thermostable endoxylanase and is a promising candidate for biomass conversion and xylooligosaccharide production. [ABSTRACT FROM AUTHOR]