Search

The incidence of brown leaf spot, attributed to Alternaria tenuissima, has exhibited an increase within potato fields in Iran. The economic losses caused by brown leaf spot and detection of cross-resistance among commonly used fungicides have incited research towards identifying alternative biocontrol sources to manage this aggressive pathogen in combination with chemicals. Among bacterial isolates that showed inhibition of A. tenuissima growth, the tested biocontrol properties and plant growth-promoting (PGP) characteristics varied. Three strains with antifungal traits and one strain with PGP capacity were chosen for further in vitro and in vivo experiments. They were identified as Bacillus halotolerans-H14, Bacillus sp.-H52, Serratia polymuthica-FR1, and Stenotrophomonas sp.-J29, respectively, using a combination of phenotypic traits and 16S rRNA sequencing. In co-culturing assays with the aforementioned bacterial strains, it was observed that they induced hyphal structural deformation and suppressed spore germination of A. tenuissima. Monitoring of the disease symptoms showed the ability of H14, FR1, and J29 to decrease disease severity under in vivo challenge experiments. Moreover, the role of aforementioned bacteria was studied in activation of potato defence pathways against A. tenuissima. During Solanum tuberosum-A. tenuissima interaction, biochemical attributes related to defence response such as superoxide and hydrogen peroxide production, redox enzymes (catalase, superoxide dismutase, ascorbate peroxidase, and guaiacol peroxidase), phenylalanine ammonia-lyase activity, and accumulation of total phenolics were markedly increased in potato plants pre-treated with Stenotrophomonas sp.-J29 and Serratia plymuthica-FR and post-inoculated with A. tenuissima. This study provides the initial evidence demonstrating the potential role of Bacillus halotolerans, Serratia plymuthica, and Stenotrophomonas sp. as prohibitor of disease progression as well as biological inducer of resistance in potato—A. tenuissima interplay. [ABSTRACT FROM AUTHOR]

Fish farming practices currently make effective use of probiotic Bacillus species, specifically Bacillus subtilis and B. licheniformis. The current study assessed the water quality, growth performance, body composition, hemato-biochemical activities, immune regulatory genes, and resistance to Aspergillus flavus in order to determine the effectiveness of the water additive probiotic Bacillus species mixture (SANOLIFE®PRO-W) on Nile tilapia aquaculture. Fish were kept in four groups (control, 0.01, 0.02, 0.03) gm. /m3for 56 days using Bacillus species in-water treatment. The results showed that the fish treated with SANOLIFE® performed significantly better (P < 0.05) in terms of growth. Significant (P < 0.05) improvements were also observed in the immune regulatory genes, antioxidant capacity, and haemato-biochemical parameters. A. flavus challenged fish showed significantly (P < 0.05) lower mortalities, indicating that Bacillus species probiotic enhanced the fish's innate immune response. In order to improve water quality, fish growth, and antioxidant activities together with innate the immune responses, Bacillus species mixture (SANOLIFE®PRO-W) can be recommended to be used in Nile tilapia aquaculture. [ABSTRACT FROM AUTHOR]

This study showcases 121 new genomes of spore-forming Bacillales from strains collected globally from a variety of habitats, assembled using Oxford Nanopore long-read and MGI short-read sequences. Bacilli are renowned for their capacity to produce diverse secondary metabolites with use in agriculture, biotechnology, and medicine. These secondary metabolites are encoded within biosynthetic gene clusters (smBGCs). smBGCs have significant research interest due to their potential as sources of new bioactivate compounds. Our dataset includes 62 complete genomes, 2 at chromosome level, and 57 at contig level, covering a genomic size range from 3.50 Mb to 7.15 Mb. Phylotaxonomic analysis revealed that these genomes span 16 genera, with 69 of them belonging to Bacillus. A total of 1,176 predicted BGCs were identified by in silico genome mining. We anticipate that the open-access data presented here will expand the reported genomic information of spore-forming Bacillales and facilitate a deeper understanding of the genetic basis of Bacillales' potential for secondary metabolite production. [ABSTRACT FROM AUTHOR]

An alkaline active L-glutaminase (BALG) producing bacterium was screened and identified from seamount sediment samples of the Arabian Sea. The isolate was confirmed to be Bacillus australimaris NIOT30 based on morphological characteristics and 16 S rRNA gene sequencing. The glutaminase gene, balg was PCR amplified, cloned and expressed in E. coli BL21 (DE3) host. The molecular weight of purified BALG was estimated to be 36 kDa and the enzyme showed a specific activity of 507 ± 27 Umg−1 against L-glutamine under optimal assay conditions of pH 7.0 and temperature at 37 °C for 15 min. The enzyme showed maximum activity at pH 7 and retained 95% activity at pH 10. BALG retained a relative activity of about 82% and 45% at 45 °C and 60 °C respectively. The kinetic parameters of BALG, Km and Kcat/Km were determined to be of 210 ± 11 mM and 4.4 × 102 M s−1 respectively. Homology modeling and substrate ligand interaction studies revealed the stability of the enzyme-substrate complex. The present study highlights the characterization of a highly active L-glutaminase from B. australimaris NIOT30. Further, mutational analyses of ligand binding residues would show insights into the affinity of L-Glutaminase. [ABSTRACT FROM AUTHOR]

Gloriosa superba L., a medicinally important plant, is often affected by leaf blight disease caused by Alternaria alternata, which compromises its productivity. This study explores the protective effects of Bacillus australimaris endophyte (NBRI GS34), demonstrating that its inoculation not only inhibits the disease but also promotes plant growth and increases the concentrations of bioactive metabolites. Co-culturing NBRI GS34 with A. alternata significantly boosts protease (30–50%) and chitinase (6–28%) activities, evidencing a synergistic interaction. Scanning electron microscopy and GC-MS analysis confirm NBRI GS34's antagonistic action and reveal antifungal compounds like undecanoic acid and benzene carboxylic acid in treatments. Greenhouse experiments show a 78% reduction in disease incidence with NBRI GS34 treatment, enhancing vegetative growth and upregulating defense-related genes. Additionally, HPLC analysis reveals increased gloriosine and colchicine concentrations by 52% and 33%, respectively. These findings suggest NBRI GS34 could serve as a sustainable fungicide alternative, enhancing the production of medically valuable compounds and highlighting its potential pharmaceutical applications. [ABSTRACT FROM AUTHOR]

Phytonematodes are responsible for causing significant harm and reducing yields in various agricultural crops. To minimize losses caused by phytonematodes and meet the high demand for agricultural production, it is important to develop effective strategies with minimal environmental impact to manage this biotic stress. Due to the adverse environmental effects associated with synthetic pesticides, it is imperative to use beneficial bacteria, such as Bacillus and Pseudomonas spp., for biocontrol purposes to control phytonematode infestation in agricultural settings. This approach has gained considerable attraction, as there is a promising market for eco-friendly biopesticides based on bacteria that can effectively manage phytonematodes. Furthermore, biocontrol strains of Bacillus and Pseudomonas have the potential to enhance crop productivity by producing various substances that promote plant growth and development. This review aims to explore the role of Bacillus and Pseudomonas spp. in phytonematode management, elucidate different mechanisms by which these bacteria suppress nematode populations, and discuss the future prospects of utilizing these bacteria in agriculture. [ABSTRACT FROM AUTHOR]

Iron (Fe) deficiency in calcareous soils is a significant agricultural challenge, affecting crop productivity and nutritional quality. This study aimed to isolate, characterize, and evaluate Fe solubilizing rhizobacterial isolates from maize rhizosphere in calcareous soils as potential biofertilizers. Forty bacterial isolates coded as SG1, SG2, ..., SG40 were isolated and screened for siderophore production, with ten showing significant Fe solubilizing capabilities. These isolates were further assessed for phosphate solubilization and exopolysaccharides production. The selected bacterial isolates were also screened under axenic conditions for their ability to improve maize growth. The isolates SG8, SG13, SG24, SG30 and SG33 significantly enhanced growth parameters of maize. Notably, SG30 showed highest increment in shoot length (58%), root length (54%), root fresh and dry biomass (67% and 76%), SPAD value (67%), relative water contents (69%), root surface area (61%), and Fe concentration in shoots (79%) as compared to control. The biochemical characterization of these strains showed that all these strains have capability to solubilize insoluble phosphorus, produce indole-3-acetic acid (IAA), and ammonia with catalase, urease and protease activity. Molecular identification through 16s rRNA gene sequencing confirmed high similarity (99.7–100%) of the selected isolates to various Bacillus species, including B. pyramidoids, B. firmicutes, and B. cereus. The study provides a strong base for developing eco-friendly, cost-effective biofertilizers to address Fe deficiency in crops and promote sustainable agriculture. [ABSTRACT FROM AUTHOR]

The use of remineralizers has been highlighted as a viable option for alternative fertilizer sources. However, it is necessary to study the impacts of its use on the biological quality of the soil. The objective of this study was to evaluate the effect of the remineralizer on the diversity of the edaphic fauna. The research was carried out in a randomized block design, with four replications and the following treatments: T0: control; T1: 100% of N-P-K; T2: Fertilization only with remineralizer; T3: 75% of N-P-K + remineralizer; T4: 75% of N-P-K + remineralizer + Azospirillum spp.; T5: 75% of N-P-K + remineralizer + Bacillus spp.; T6: 75% of N-P-K + Azospirillum spp.; T7: 75% of N-P-K + Bacillus spp. The soil fauna was sampled two times of the year using pitfall traps, and soil samples were collected at the same points for explanatory variables (chemical and microbiological attributes of the soil). The diversity of groups varied between the collection times, and the most frequent were Collembola, Formicidae, and Acari. The use of remineralizer favored the diversity of groups and the establishment of Collembola populations compared to treatments with conventional fertilizer. [ABSTRACT FROM AUTHOR]

Freshwater habitat is a natural reservoir for antimicrobial resistance (AMR). AMR poses serious human, animal, and environmental public health threats. This study aimed to evaluate the physicochemical and microbiological quality of five selected rivers (Apitipiti 1, Apitipiti 2, Apitipiti 3, Sogidi, and Aba Apa Akinmorin) in Oyo town, Nigeria, as well as the antibiotic resistance pattern of isolated bacterial species, using conventional methods. Most physicochemical parameters were within WHO and NIS permissible limits. Pearson's correlation matrix indicated that there were significant (p < 0.05) interactions among pH, electrical conductivity, temperature, sulphate and chloride salts, and BOD and COD. A total of thirty-two (32) bacterial species were isolated and identified as: Aeromonas (9), Bacillus (2), Corynebacterium (13), Lactobacillus (1), Pseudomonas (2), Staphylococcus (4), and Streptococcus (1). Of the rivers, Sogidi had the highest microbial load (6.36 log CFU/mL) while Apititipiti 1 had the lowest (5.76 log CFU/mL). With regard to antibiotic sensitivity, 81.8% were multidrug-resistant, with Corynebacterium kutscheri and Aeromonas spp. isolated from Apitipiti 2 and Aba Apa Akinmorin rivers, respectively, exhibiting a relatively high antibiotic resistance of 90.9%. This study reveals that these rivers may be unfit for consumption as multidrug-resistant bacteria of public health risk were associated with them. [ABSTRACT FROM AUTHOR]

The sebum on human skin is generated for various causes. The composition of the formed sebum increases the proliferation of Cutibacterium acnes (C. acnes) residing on the skin. As C. acnes proliferates, it produces skin irritants that stimulate the sebaceous glands, increasing sebum production. Skin troubles such as acne may occur. The lysate concentrates of Bacillus stratosphericus (B. stratosphericus), first discovered in the stratosphere, confirmed a 66.35% inhibition of Nitric Oxide (NO) production at 0.50 mg/ml concentration in vitro. Additionally, the growth inhibition efficacy of B. stratosphericus lysate concentrate (BSLC) against C. acnes was confirmed, showing a 95.1% inhibition of growth proliferation at a consistency of 0.50 mg/ml. Based on the in vitro results, the efficacy of BSLC in degrading and reducing sebum was confirmed by reacting it with artificial sebum to various concentrations. The results showed a concentration-dependent decrease in artificial sebum ccording to the efficacy results confirmed in vitro, a clinical trial was conducted to evaluate the daily sebum reduction efficacy of a serum formulation containing 50 mg/ml of BSLC. After a 4-week application, the test group containing BSLC determined a significant 28.68% reduction in sebum levels, demonstrating the practical implications of the research. In conclusion, BSLC is considered to have sufficient industrial value as a valuable ingredient for the cosmetics industry aimed at sebum improvement. [ABSTRACT FROM AUTHOR]

This study aimed to identify and characterize actinobacteria and rhizobia with plant growth-promoting (PGP) traits from chickpea plants. Out of 275 isolated bacteria, 25 actinobacteria and 5 chickpea rhizobia showed 1-aminocyclopropane-1-carboxylate deaminase (ACCd) activity. Selected chickpea rhizobia were tested for their nodulating capacity under sterile and non-sterile soil conditions. Further screening on salinity and PGP traits identified three promising isolates: Nocardiopsis alba KG13, Sinorhizobium meliloti KGCR17, and Bacillus safensis KGCR11. These three isolates were analyzed for their compatibility and made into a consortium (Consortium 1). This along with another consortium made from our salinity-tolerant lab strains Chryseobacterium indologenes ICKM4 and Stenotrophomonas maltophilia ICKM15 (Consortium 2) was compared in planta studies. Trials revealed that Consortium 2 showed significant (p < 0.05) tolerance and on above-ground, below-ground traits and yield components than Consortium 1. Moreover, both consortia induced nodulation in saline-stressed plants, alleviated electrolyte leakage (2.3 vs. 0.4 in ICCV 2; 1.8 vs. 0.6 in JG 11), and increased chlorophyll content. Histochemical staining indicated reduced oxidative stress and lipid peroxidation in consortium-treated plants under salinity stress. Further, gene expression studies revealed mixed patterns, with up-regulation of antioxidant and transporter genes observed in consortium-treated plants, particularly in Consortium 2. Overall, Consortium 2 showed better gene expression levels for antioxidant and transporter genes, indicating its superior efficacy in mitigating salinity stress in chickpea plants. This study provides valuable insights into the potential use of these microbial isolates in improving chickpea productivity by enhancing salinity tolerance. [ABSTRACT FROM AUTHOR]

The potential of superworm to remove certain plastic polymers has recently been noted. In this study, aerobic bacterial strains were isolated from the gut of Zophobas morio larvae which were fed with polyethylene (PE), polyethylene terephthalate (PET), polypropylene (PP), and polystyrene (PS) polymers. Strains P2 (Leminorella), P6 (Bacillus), P9 (Bacillus), and P5 (Citrobacter) were associated with the highest PS (2.7%), PP (1.3%), PET (1.1%), and PE (0.42%) weight loss after 28 days, respectively. Pretreatments including thermal treatment (80 °C for 10 days), weathering (4 months in the free environment), and nitric and sulfuric acids (1 N, 10 days) improved the degradation of PE (1.3%), PET (1.9%), PP (5.2%), and PS (8.3%) by the same strains, respectively. Further analyses on the PS degradation by Leminorella sp. P2 revealed acid pretreatment promoted the formation of the C = C, C = O, and O˗H functional groups. Surface irregularities, as well as a 3.6-fold increase in surface roughness, were observed in the PS film subjected to biodegradation. The contact angle dropped from 98.4° to 42.2° following the biodegradation. Bacterial depolymerization was confirmed by the 8.7% and 3.4% reduction of Mn and Mw and the change in polydispersity from 1.65 to 1.75. The results suggest that Zophobas morio microbiota in combination with abiotic pretreatment can be considered for plastic waste management. [ABSTRACT FROM AUTHOR]

As methanol can be derived from either CO2 or methane, methanol economy can play an important role in combating climate change. In this scenario, rapid utilization of methanol by an industrial microorganism is the first and crucial step for efficient utilization of the C1 feedstock chemical. Here, we report the development of a methylotrophic E. coli strain with a doubling time of 3.5 hours under optimal conditions, comparable or faster than native model methylotrophs Methylorubrum extorquens AM1 (Td~4hr) and Bacillus methanolicus at 37°C (Td~5hr). To accomplish this, we develop a bacterial artificial chromosome (BAC) with dynamic copy number variation (CNV) to facilitate overcoming the formaldehyde-induced DNA-protein cross-linking (DPC) problem in the evolution process. We track the genome variations of 75 cultures along the evolution process by next-generation sequencing, and identified the features of the fast-growing strain. After stabilization, the final strain (SM8) grows to 20 g/L of cell mass within 77 hrs in a bioreactor. This study illustrates the potential of dynamic CNV as an evolution tool and synthetic methylotrophs as a platform for sustainable biotechnological applications. Growth rate is critical for the efficiency of engineered methylotrophic microbes for bioproduction. Here, the authors report the development of a methylotrophic E. coli strain with a doubling time that is comparable or faster than native model methylotrophs. [ABSTRACT FROM AUTHOR]

One of the most important phytosanitary diseases affecting the production and marketing of the 'Hass' avocado fruit is anthracnose, mainly caused by the fungus Colletotrichum gloeosporioides. This disease is controlled with synthetic fungicides, which can cause harm to humans and the environment. Due to this, safer alternatives have been sought, such as biological control. The objective of this study was to isolate and characterize Bacillus spp. strains that biocontrol C. gloeosporioides in 'Hass' avocado fruits. The isolation, purification, and molecular identification of bacteria with biocontroller capacity was carried out. In vitro and in vivo tests were carried out against the pathogen C. gloeosporioides. Furthermore, the percentage inhibition of spore germination, enzymatic profile, and nutrient assimilation were determined. Forty-three native bacterial strains were isolated from the 'Hass' avocado fruit. The strains that showed the greatest antagonistic capacity in vivo against C. gloeosporioides were Bacillus pumilus AB31, B. thuringiensis AB30, B. thuringiensis AB7, and B. thuringiensis AB21. These strains could produce extracellular enzymes, such as phosphatases, proteases, and β-glucosidase, as well as the assimilation of D-ribose and trehalose. The above favors their antagonistic activity. Four strains of the genus Bacillus (one B. pumilus and three B. thuringiensis) can control C. gloeosporioides in 'Hass' avocado. [ABSTRACT FROM AUTHOR]

Objective: The β-pore-forming toxins hemolysin II (HlyII) and cytotoxin K2 (CytK2) are important pathogenic factors of the opportunistic bacterium Bacillus cereus and are secreted as monomers that can oligomerize in the presence of a target cell to form transmembrane channels. Analysis of the nucleotide sequence of HlyII and CytK2 suggests the possibility of truncated forms of these proteins that was confirmed by immunochemical, and chromatography-mass spectroscopic analyzes. Methods: HlyII and CytK2 were expressed in recombinant strains of E. coli BL21(DE3) carrying plasmids pET29 which produced the intracellular proteins HlyII and CytK2 from B. cereus ATCC14579T. In the case of HlyII, fractions containing soluble intracellular proteins, periplasmic proteins, and cellular debris were obtained and analyzed using monoclonal antibodies. The truncated protein forms HlyII and CytK2 were analyzed by chromatography-mass spectrometry analysis. Results and Discussion: Analysis of the primary amino acid sequences of HlyII and CytK2 revealed the presence of potential internal translation initiation sites within the sequence. The presence of the truncated forms of HlyII was confirmed by immunochemical analysis using monoclonal antibodies and by chromatography-mass spectrometry. During expression of the CytK2 protein in E. coli cells, a protein fragment was identified and excised from a polyacrylamide gel, the identity of which with the CytK2 protein was confirmed by chromatography-mass spectrometry analysis. Conclusions: The results obtained confirm the general concept that the bacterial genome is capable of encoding a wider range of proteins than the number of genes it contains. The opportunistic bacterium B. cereus is often the cause of nosocomial infections, one of its key virulent factors are hemolysin II and cytotoxin K2. Using monoclonal antibodies and mass spectrometric analysis it has been shown that these hemolytic enzymes are capable of forming shortened forms. [ABSTRACT FROM AUTHOR]

Few studies have investigated the biodegradation of microplastics in marine environments. Microorganisms that can degrade microplastics in high-salinity conditions are sought after. Therefore, we aimed to isolate a halotolerant poly(ε-caprolactone) (PCL)-degrading bacterium for applications in biotechnology. The bacterium isolated from seaside soil was identified as Bacillus gibsonii via phylogenetic analysis based on 16S rRNA gene sequences and designated as KRICT-1. We tested whether the KRICT-1 strain showed halotolerance by determining the sodium chloride (NaCl) tolerance at various concentrations. The KRICT-1 strain showed growth at up to 10% NaCl on Luria–Bertani (LB) medium agar plates and 10% NaCl in liquid LB medium, indicating that KRICT-1 can grow and produce a PCL-depolymerizing enzyme under high-salt conditions. The KRICT-1 strain could depolymerize PCL with a PCL film weight loss of 2.82% at up to 10% NaCl concentration after cultivation of 7 weeks. KRICT-1 is the first strain of B. gibsonii which shows PCL-depolymerizing activity. Scanning electron microscopy and water contact angle results confirmed the degradation of PCL by the KRICT-1 strain. The extracellular enzyme produced by the KRICT-1 strain was stable over a wide range of temperatures (15–40 °C) and pH (7.0–9.5). This halotolerant PCL-degrading bacterium can be used in the degradation of biodegradable plastics present in saline soils, saline water, and wastewater. [ABSTRACT FROM AUTHOR]

Corals are colonized by a plethora of microorganisms, and their diversity plays a significant role in the health and resilience of corals when they face oxidative stress leading to bleaching. In the current study, we examined 238 bacteria isolated from five different coral species (Acropora hyacinthus, Pocillopora damicornis, Podabacea crustacea, Porites lobata, and Pavona venosa) collected from the coral reef ecosystems of Kavaratti, Lakshadweep Islands, India. We found that bacteria such as Psychrobacter sp., Halomonas sp., Kushneria sp., Staphylococcus sp., Bacillus sp., Brachybacterium sp., Citrobacter sp., and Salinicola sp. were commonly present in the corals. On the other hand, Qipengyuania sp., Faucicola sp., Marihabitans sp., Azomonas sp., Atlantibacter sp., Cedecea sp., Krasalinikoviella sp., and Aidingimonas sp. were not previously reported from the corals. Among the bacterial isolates, a significant number showed high levels of biofilm formation (118), UV absorption (119), and melanin production (127). Considering these properties, we have identified a combination of seven bacteria from the genera Halomonas sp., Psychrobacter sp., Krasalinikoviella sp., and Micrococcus sp. as a potential probiotic consortium for protecting corals from oxidative stress. Overall, this study provides valuable insights into the coral microbiome and opens up possibilities for microbiome-based interventions to protect these crucial ecosystems in the face of global environmental challenges. [ABSTRACT FROM AUTHOR]

Probiotics are live microorganisms that, when administered in adequate quantities, provide health benefits to the host. In this study, phenotypic and genotypic methods were used to evaluate the probiotic properties of Bacillus altitudinis 1.4. The isolate was sensitive to all antimicrobials tested and presented a positive result in the hemolysis test. B. altitudinis 1.4 spores were more resistant than vegetative cells, when evaluated in simulation of cell viability in the gastrointestinal tract, as well as adhesion to the intestinal mucosa. The isolate was capable of self-aggregation and coaggregation with pathogens such as Escherichia coli ATCC 25922 and Salmonella Enteritidis ATCC 13076. Genomic analysis revealed the presence of genes with probiotic characteristics. From this study it was possible to evaluate the gene expression of pro-inflammatory and anti-inflammatory cytokines for different treatments. Viable vegetative cells of B. altitudinis 1.4 increased the transcription of pro-inflammatory factors, in addition to also increasing the transcription of IL-10, indicating a tendency to stimulate a pro-inflammatory profile. Given the results presented, B. altitudinis 1.4 showed potential to be applied in the incorporation of this microorganism into animal feed, since the spores could tolerate the feed handling and pelletization processes. [ABSTRACT FROM AUTHOR]

Self-healing bacteria, when integrated with natural fiber-reinforced concrete, form a distinctive and sustainable building material with the inherent ability to enhance strength and facilitate crack healing. This paper reports on effective curing method that can reduce the excessive consumption of curing water for self-healing bacteria integrated natural fiber-reinforced concrete. A comprehensive analysis is conducted to evaluate parameters such as compressive strength (CS), compressive strength regain (CSR), and ultrasonic pulse velocity (UPV) under different curing systems, namely, pond curing (PC) and wet covering (WC). The investigation commences with the identification of bacteria from a suitable environment, followed by their direct addition to concrete, along with varying percentages of jute fibers (0.3, 0.5, and 0.7). The results obtained from the WC system reveal that, in comparison with Bacillus paramycoides, Bacillus tropicus exhibits increased values of CSR, UPV, and crack healing by 88%, 28%, and 92%, respectively. Numerical analysis is carried for evaluating crack pattern behavior of cubes under compression and compared with experimental data. Microstructural analysis explores the fact that the porous microstructure of the cement matrix is densified through the microbial-induced precipitation of various polymorphs of calcium carbonates. [ABSTRACT FROM AUTHOR]

The pine processionary moth Thaumetopoea wilkinsoni (Tams, 1926) (Lepidoptera: Notodontidae) is one of the most harmful species that causes destruction in pine ecosystems and also causes critical skin reactions in humans and animals due to its urticating hairs. This study aimed to evaluate the efficacy of different strains [Bti ATCC 35646 (wild-type strain), Bti pHT315, and Bti pHTppk (mutant strain)] of Diptera-targeted Bacillus thuringiensis subsp. israelensis (Bti) and toxins (spore/crystal mixtures) obtained from these strains against the 4th larval stage of T. wilkinsoni under laboratory conditions. T. wilkinsoni eggs were collected from pine trees at Ondokuz Mayıs University in Samsun, Turkey, in 2022. Pine needles were contaminated with bacterial strains of different concentrations (1 × 107, 1 × 108, 1 × 109 cfu/mL) in 5 mL and toxins in different concentrations (0.15, 0.3, 0.6, 1.25, 2.5, 5 mg/mL) in 2 mL. Larvae were placed in containers with 30 larvae in each group and were observed for 25 days. As a result of the study, Bti ATCC 35646 with 63.4% mortality and the lowest LC50 value of 1.2 × 109 cfu/mL among the three strains of Bti and Bti pHTppk with 76.7% mortality and the lowest LC50 value of 1.2 mL among the toxins from the Bti strains had found to be virulent for T. wilkinsoni. The results obtained from our study suggest that Diptera-targeted Bti is virulent to T. wilkinsoni and that this strain and spore/crystal mixture can be used in the biological control of this species. [ABSTRACT FROM AUTHOR]

The bacterium Bacillus subtilis is a widely used study model and industrial workhorse organism that belongs to the group of gram-positive bacteria. In this study, we report the analysis of a newly sequenced complete genome of B. subtilis strain SRCM117797 along with a comparative genomics of a large collection of B. subtilis strain genomes. B. subtilis strain SRCM117797 has 4,255,638 bp long chromosome with 43.4% GC content and high coding sequence association with macromolecules, metabolism, and phage genes. Genomic diversity analysis of 232 B. subtilis strains resulted in the identification of eight clusters and three singletons. Of 147 B. subtilis strains included, 89.12% had strain-specific genes, of which 6.75% encoded strain-specific insertion sequence family transposases. Our analysis showed a potential role of strain-specific insertion sequence family transposases in intra-cellular accumulation of strain-specific genes. Furthermore, the chromosomal layout of the core genes was biased: overrepresented on the upper half (closer to the origin of replication) of the chromosome, which may explain the fast-growing characteristics of B. subtilis. Overall, the study provides a complete genome sequence of B. subtilis strain SRCM117797, show an extensive genomic diversity of B. subtilis strains and insights into strain diversification mechanism and non-random chromosomal layout of core genes. [ABSTRACT FROM AUTHOR]

Dental caries is a commonly occurring non-communicable disease throughout the world that might compromise the quality of any individual's life. Glass ionomer cements (GIC) are the most acceptable restorative materials due to their ease of manipulation, minimal tooth loss and least invasive strategy; however, they lack mechanical stability that has become a point of concern. Nanoparticles (NPs) are an outstanding option for modifying and enhancing the properties of dental materials. The focus of this study was to prepare novel, biocompatible titania dioxide (TiO2) NPs as a dental-restorative material using an efficient probiotic Bacillus coagulans. The prepared NPs were incorporated into glass ionomer restorative material at varying concentrations and investigated for cell viability percentage, microhardness and surface morphology. Results indicated that pure 100% anatase phase TiO2 NPs with particle size of 21.84 nm arranged in smooth, spherical agglomerates and clusters forms. These NPs depicted cell viability > 90%, thus confirming their non-cytotoxic behavior. GIC restorative materials reinforced by 5% titania (TiO2) NPs demonstrated the highest microhardness in comparison to the control group and other experimental groups of the study. Surface morphology analysis revealed a reduction in cracks in this novel dental-restorative material supporting its compatible biological nature with better hardness strength and negligible crack propagation. Overall, these results indicated that TiO2 NPs produced using a biological approach could be easily used as restorative materials in dental applications. [ABSTRACT FROM AUTHOR]

Plastic pollution has quadrupled over the past years and has become a global concern due to its direct impact on life forms. The present study analysed whether the plastic debris in aquatic environments could act as the substratum for the antimicrobial-resistant (AMR) bacteria to form biofilm for survival. We have collected various plastic debris (n = 32) from six sites of the Periyar River, the drinking water source for the entire city and one of the most polluted rivers in Kerala (India). The chemical composition of plastics was screened via FTIR analysis and found that they comprised two types, viz., polyethylene and polypropylene. Bacteria isolated from the samples were screened for the AMR characteristics towards eight different classes of antibiotics. All isolates showed 100% resistance towards colistin and obtained the MAR index value of 0.1–0.4 range. Six representative bacterial isolates with high multiple antibiotic resistance (MAR) index were selected and identified by 16sRNA sequencing as Lysinibacillus mangiferihumi, Bacillus pumilus, Bacillus safensis, Bacillus cereus, Bacillus altitudins and Bacillus pumilus. In vitro biofilm formation was experimented on the purchased plastic samples in artificial media and river water using two selected strains, Bacillus pumilus and Bacillus cereus. Significant variations were observed in biofilm growth in different media (P < 0.05) regardless of plastic types (P > 0.05). The extracellular polymeric substances (EPS) and the characteristic holes on the surface morphology were visualized in SEM analysis, thus indicating the conditioning of the plastics by the isolates for biofilm formation. [ABSTRACT FROM AUTHOR]

Acetaminophen [N-(4-hydroxyphenyl) acetamide, APAP] is an extensively and frequently consumed over-the-counter analgesic and antiphlogistic medication. It is being regarded as an emerging pollutant due to its continuous increment in the environment instigating inimical impacts on humans and the ecosystem. Considering its wide prevalence in the environment, there is an immense need of appropriate methods for the removal of APAP. The present study indulged screening and isolation of APAP degrading bacterial strains from pharmaceuticals-contaminated sites, followed by their molecular characterization via 16S rRNA sequencing. The phylogenetic analyses assigned the isolates to the genera Pseudomonas, Bacillus, Paracoccus, Agrobacterium, Brucella, Escherichia, and Enterobacter based on genetic relatedness. The efficacy of these strains in batch cultures tested through High-performance Liquid Chromatography (HPLC) revealed Paracoccus sp. and Enterobacter sp. as the most promising bacterial isolates degrading up to 88.96 and 85.92%, respectively of 300 mg L−1 of APAP within 8 days of incubation. Michaelis–Menten kinetics model parameters also elucidated the high degradation potential of these isolates. The major metabolites identified through FTIR and GC–MS analyses were 4-aminophenol, hydroquinone, and 3-hydroxy-2,4-hexadienedioic. Therefore, the outcomes of this comprehensive investigation will be of paramount significance in formulating strategies for the bioremediation of acetaminophen-contaminated sites through a natural augmentation process via native bacterial strains. [ABSTRACT FROM AUTHOR]

Protein filaments are ubiquitous in nature and have diverse biological functions. Cryo-electron microscopy (cryo-EM) enables the determination of atomic structures, even from native samples, and is capable of identifying previously unknown filament species through high-resolution cryo-EM maps. In this study, we determine the structure of an unreported filament species from a cryo-EM dataset collected from Bacillus amyloiquefaciens biofilms. These filaments are composed of GerQ, a spore coat protein known to be involved in Bacillus spore germination. GerQ assembles into a structurally stable architecture consisting of rings containing nine subunits, which stacks to form filaments. Molecular dockings and model predictions suggest that this nine-subunit structure is suitable for binding CwlJ, a protein recruited by GerQ and essential for Ca2+-DPA induced spore germination. While the assembly state of GerQ within the spores and the direct interaction between GerQ and CwlJ have yet to be validated through further experiments, our findings provide valuable insights into the self-assembly of GerQ and enhance our understanding of its role in spore germination. Here, the authors structurally characterise a protein filament species composed of the spore coat protein GerQ using cryo-EM. The nine-subunit assembly sheds light on spore biology and hints at an interaction with CwlJ, a protein required for spore germination. [ABSTRACT FROM AUTHOR]

Background and aims: Phosphate-solubilizing bacteria (PSB) possess significant potential for enhancing soil phosphorus bioavailability, but their efficacy may be constrained by carbon and nitrogen availability. Algae exhibit synergistic interactions with bacteria through producing active organic carbon. However, the influence of algae and PSB together on phosphorus bioavailability under varying nitrogen levels remains unclear. Methods: We conducted a microcosm experiment to explore the effects of applying Chlorella-Bacillus biofertilizer, along with various nitrate addition amounts, on both soil microbial community composition and phosphorus bioavailability. In addition, we employed a co-culture of Chlorella and Bacillus with different nitrogen concentrations to investigate the possible effects of nitrate addition on the production of organic anions and phosphatases of the Chlorella-Bacillus communities by using metabolomic analysis. Results: Chlorella-Bacillus biofertilizer significantly increased soil Olsen-P concentration via strong interactive effects correlating with the various nitrate addition amounts in the microcosm experiment. These effects were due mainly to reducing the algal diversity, soil pH, and changing dissolved organic matter (DOM) characteristics, especially increasing the humification index (HIX). The metabolomic analyses of co-culture confirm that pathways related to the biosynthesis of fatty acids and phosphatases production are enhanced when nitrogen levels are high. Conclusion: Chlorella-Bacillus biofertilizer has significantly interactive effects with nitrate addition on soil phosphorus bioavailability by influencing soil DOM, pH and production of organic anions and phosphatases. These insights are useful for optimizing bio-fertilizer-nitrate combinations for increasing phosphorus bioavailability thereby reducing chemical fertilizer requirements. [ABSTRACT FROM AUTHOR]

Magnetotactic bacteria (MTB) are a unique ecophysiological group of iron-metabolizing bacteria that have immense potential biotechnological applications. These bacteria have predominantly been isolated from oxygen-limited conditions of aquatic niches and rarely from the soils. The Western Ghats biodiversity hotspot has been well-studied for its fauna and flora diversity. The present study includes optimization of enrichment medium for cultivation of MTB, to suit aerobic mesophiles from forest soil. The major components included were Ferric quinate and Resazurin. The enrichment and isolates were characterized for their magnetic properties using magnetotaxis on agar plates, Vibrating Sampler Magnetometer (VSM), and X-ray diffraction (XRD) analysis. The isolates, namely Bacillus sp. S1 (MN212953), Sphingoaurantiacus sp. S2_03 (MN212954), Burkholderia sp. S2_08 (MN212955) and Microvirga sp. S2_09 (MN212956) were isolated and characterized to have a magnetosome size of 2.5–8 nm. Our study is the first report on the enrichment and isolation of MTB from Western Ghats forest soil. [ABSTRACT FROM AUTHOR]

The present study assessed the growth and fish performance of juvenile red sea bream fed four isonitrogenous (46–48%) and isolipidic (15%) diets containing 45% fishmeal (control) and 15%, 30%, and 45% defatted black soldier fly (BSF) Hermetia illucens meal for 67 days. Subsequent analyses showed that there were no significant differences in the growth parameters, nutrient digestibility, and body composition of fish among all treatments. Although no significant difference was observed in fish growth, low growth was observed when the fish meal was totally replaced with the BSF meal. Higher alpha diversity of intestinal microbiota was observed in fish fed the BSF meal-based diet compared to that of the control. In the treatment groups fed the BSF meal, elevations in the presence of microbial genera that produce digestive enzymes, such as chitinase (Nocardia, Vibrio, Paenibacillus, Photobacterium), lipase (Paenibacillus, Photobacterium), and trypsin-like serine protease (Bacillus, Paenibacillus) and vitamin B group [biotin (Vibrio, Paenibacillus, Bacillus), cobalamin (Pseudomonas, Bacillus, Propionibacterium), and pyridoxin (Photobacterium)], were observed. We also found an increasing trend of bacteria producing antioxidative enzymes, such as superoxide dismutase and catalase (Nocardia, Pseudomonas, Photobacterium) in the BSF groups. These results suggested that the BSF meal could replace 67% of fishmeal without causing a negative impact on growth and lead to beneficial effects on the intestinal microbiota of the red sea bream. [ABSTRACT FROM AUTHOR]

Antibiotics are essential for combating pathogens; however, their misuse has led to increased resistance, necessitating the search for effective, low-toxicity alternatives. Surfactin, a cyclic lipopeptide with a C12-C17 β-hydroxy fatty acid chain, exhibits significant antibacterial activity and resists resistance, making it a research focus. Nonetheless, the effects of branched-chain amino acids (BCAAs) on surfactin's structure and activity are not well understood. This study examines the influence of BCAAs (L-valine, L-leucine, and L-isoleucine) on the lipopeptide (surfactin) produced by Bacillus velezensis YA215. Process optimization shows that adding 1 g/L of L-Leu and L-Ile, and 0.5 g/L of L-Val, maximized surfactin production to 18.59%, 19.23%, and 20.64%, respectively. Surfactin content peaked at 36 h with L-Val and L-Ile, yielding 19.72% and 11.37%. In contrast, L-Leu addition peaked at 24 h, yielding 11.33%. Notably, L-Val supplementation resulted in the highest relative surfactin content. Antimicrobial testing demonstrated that BCAAs significantly enhance the antibacterial effects of lipopeptides against Escherichia coli and Staphylococcus aureus, with Val showing the most pronounced effect. The addition of BCAAs notably altered the composition of surfactin fatty acid chains. Specifically, Val increased the proportions of iso C14 and iso C16 β-hydroxy fatty acids from 13.3% and 4.216–23.803% and 8.31%, respectively. Additionally, the amino acid composition at the 7th position of the peptide chain changed significantly, especially with Val addition, which increased the proportion of C14 [Val 7] surfactin by 3.29 times. These structural changes are likely associated with the enhanced antibacterial activity of surfactin. These findings provide valuable insights into the roles of BCAAs in microbial fermentation, underscoring their importance in metabolic engineering to enhance the production of bioactive compounds. [ABSTRACT FROM AUTHOR]

Zinc solubilizing bacteria inhabiting root endosphere possesses great potential to enhance plant yield by solubilizing the nutrients. The potential of Zn solubilizing bacteria Bacillus sp. SH-10 and Bacillus cereus SH-17 to improve yield and grain zinc content of rice was investigated under different regimes of individual and co-inoculation in the presence and absence of chemical fertilizer zinc sulfate (ZnSO4). The strains were applied to the rice varieties basmati 385 and super basmati under field conditions for two consecutive years. A significantly improved growth of rice plants, such as plant height (102–118 cm), number of tillers per plant (8.5–11.5), chlorophyll content (29.5–35.1), zinc requiring enzymes, i.e., superoxide dismutase (396–570 per gram fresh weight (g−1 FW)), carbonic anhydrase activity (CA) (10–15.06 U g−1 FW) and grain yield (3.0–3.8 tons ha−1), was observed in the plants inoculated with Bacillus sp. in the presence of chemical fertilizer (ZnSO4). Consortium of zinc solubilizing bacteria also caused higher grain Zn content (25.0–30.5 mg kg−1) of the rice varieties basmati 385 and super basmati as compared to that of un-inoculated plants. Hence, it can be concluded that Zn solubilizing bacteria has immense potential to be used as agricultural crop inoculants as they synergize the effect of chemical Zn, increase yield and improve the nutritional value of crops. [ABSTRACT FROM AUTHOR]

Hands are in fact the main route of transmission of pathogenic infections. By using proper hand sanitization, we can break the virus's transmission chain, which is especially important in the ongoing COVID pandemic outbreaks. The effectiveness of hand sanitization is solely dependent on the use of sufficient antibacterial agents, which come in a variety of levels and types, including antimicrobials commercial, water-based, or alcohol-based hand sanitizer, the latter being widely used during pandemics. Therefore, the sudden overuse of sanitizers also could lead to an increase in the tolerance limit for normal hand flora and the new development of antimicrobial resistance (AMR). In this study, we investigated the relationship between hand sanitizer-tolerant bacteria and their antibiotic resistance profile to multiple antibiotic agents. On a timely basis before and after using different hand sanitizers, bacterial strains were collected from the volunteers of CSIR-Central Salt and Marine Chemicals Research Institute (CSIR-CSMCRI). Sanitizer tolerant bacterial strains were observed also just after the application of sanitizers, which also showed the AMR phenomenon. The resultant sanitizers' resistant microbiome showed the dominant presence of Bacillus sp., Staphyloccocus sp., Paenibacillus sp., Lysinibacillus sp., Exiguobacterium sp. and Leclercia sp. All 36 nos of bacterial strains showed MDR (> 5 nos). [ABSTRACT FROM AUTHOR]

The mangrove ecosystem is a sensitive and highly productive ecosystem in the sea-land transition zone. Mangroves are almost saturated with marine ecosystems and provide ecological services and the organisms of the mangrove ecosystem are adapted to the dynamic conditions of the intertidal zone. For global sustainability, anthropogenic activities that destroy mangrove ecosystems must be reduced, and effective management is needed to mitigate these threats to improve mangrove health and ecosystem services. Plant growth-promoting microorganisms (PGPMs), which include growth-promoting bacteria (PGPB) such as Acinetobacter, Alcaligenes, Arthrobacter, Azospirillum, Azotobacter, Bacillus, Burkholderia, Clostridium, Enterobacter, Flavobacterium, Paenibacillus, Pseudomonas, and Rhizobium, plant growth promoting actinobacteria (PGPA) Actinophytocola, Nocardiopsis, Pseudonocardia, and Streptomyces, plant growth promoting fungi (PGPF) Aspergillus, Fusarium, Gliocladium, Humicola, Penicillium, Phoma, and Trichoderma and plant growth promoting cyanobacteria (PGPC) like Anabaena, Aphanothece, Calothrix, Lyngbya, Microcoleus, Nostoc, and Oscillatoria help the mangrove plants to acquire nutrients, produce growth-promoting substances, and resist stress. In addition, PGPMs promote nutrient cycling, leaf litter degradation, organic and inorganic pollutant remediation, pathogen inhibition, and enhance soil stabilization. The biofilm formed by PGPMs increases physical, chemical, and biological stress resistance, and the associated extracellular polymeric substances (EPS) stabilize the soil. This complex and highly structured microbial community is essential to plant and soil health. The primary goal of this review is to explore the ecological interactions between microbes, mangrove plants, and the intertidal environment, focusing on implementing PGPM-based strategies to sustain mangrove ecosystems. Additionally, this review explores how PGPMs enhance plant and soil health, mitigate stress in mangrove vegetation, and improve ecosystem services. [ABSTRACT FROM AUTHOR]

Many notable applications have been described for magnetic nanoparticles in delivery of diverse drugs and bioactive compounds into cells, magnetofection for the treatment of cancer, photodynamic therapy, photothermal therapy, and magnetic particle imaging (MPI). In response to the growing demand for magnetic nanoparticles for drug delivery or biomedical imaging applications, more effective and eco-friendly methodologies are required for large-scale biosynthesis of this nanoparticles. The major challenge in the large-scale biomedical application of magnetic nanoparticles lies in its low efficiency and optimization of nanoparticle production can address this issue. In the current study, a prediction model is suggested by the fractional factorial designs. The present study aims to optimize culture media components for improved growth and iron uptake of this strain. The result of optimization for iron uptake by the strain ASFS1 is to increase the production of magnetic nanoparticles by this strain for biomedical applications in the future. In the present study, design of experiment method was used to probe the effects of some key medium components (yeast extract, tryptone, FeSO4, Na2-EDTA, and FeCl3) on Fe content in biomass and dried biomass of strain ASFS1. A 25−1 fractional factorial design showed that Na2-EDTA, FeCl3, yeast extract-tryptone interaction, and FeSO4-Na2-EDTA interaction were the most parameters on Fe content in biomass within the experimented levels (p < 0.05), while yeast extract, FeCl3, and yeast extract-tryptone interaction were the most significant factors within the experimented levels (p < 0.05) to effect on dried biomass of strain ASFS1. The optimum culture media components for the magnetic nanoparticles production by strain ASFS1 was reported to be 7.95 g L−1 of yeast extract, 5 g L−1 of tryptone, 75 μg mL−1 of FeSO4, 192.3 μg mL−1 of Na2-EDTA and 150 μg mL−1 of FeCl3 which was theoretically able to produce Fe content in biomass (158 μg mL−1) and dried biomass (2.59 mg mL−1) based on the obtained for medium optimization. Using these culture media components an experimental maximum Fe content in biomass (139 ± 13 μg mL−1) and dried biomass (2.2 ± 0.2 mg mL−1) was obtained, confirming the efficiency of the used method. [ABSTRACT FROM AUTHOR]

Cigars and cigarillos are emerging as popular tobacco alternatives to cigarettes. However, these products may be equally harmful to human health than cigarettes and are associated with similar adverse health effects. We used 16S rRNA gene amplicon sequencing to extensively characterize the microbial diversity and investigate differences in microbial composition across 23 different products representing three different cigar product categories: filtered cigar, cigarillo, and large cigar. High throughput sequencing of the V4 hypervariable region of the 16 s rRNA gene revealed 2124 Operational Taxonomic Units (OTUs). Our findings showed that the three categories of cigars differed significantly in observed richness and Shannon diversity, with filtered cigars exhibiting lower diversity compared to large cigars and cigarillos. We also found a shared and unique microbiota among different product types. Firmicutes was the most abundant phylum in all product categories, followed by Actinobacteria. Among the 16 genera shared across all product types were Bacillus, Staphylococcus, Pseudomonas, and Pantoea. Nine genera were exclusively shared by large cigars and cigarillos and an additional thirteen genera were exclusive to filtered cigars. Analysis of individual cigar products showed consistent microbial composition across replicates for most large cigars and cigarillos while filtered cigars showed more inter-product variability. These findings provide important insights into the microbial diversity of the different cigar product types. [ABSTRACT FROM AUTHOR]

The escalating interest in Bacillus velezensis as a biocontrol agent arises from its demonstrated efficacy in inhibiting both phytopathogenic fungi and bacteria, positioning it as a promising candidate for biotechnological applications. This mini review aims to offer a comprehensive exploration of the multifaceted properties of B. velezensis, with particular focus on its beneficial interactions with plants and its potential for controlling phytopathogenic fungi. The molecular dialogues involving B. velezensis, plants, and phytopathogens are scrutinized to underscore the intricate mechanisms orchestrating these interactions. Additionally, the review elucidates the mode of action of B. velezensis, particularly through cyclic lipopeptides, highlighting their importance in biocontrol and promoting plant growth. The agricultural applications of B. velezensis are detailed, showcasing its role in enhancing crop health and productivity while reducing reliance on chemical pesticides. Furthermore, the review extends its purview in the industrial and environmental arenas, highlighting its versatility across various sectors. By addressing challenges such as formulation optimization and regulatory frameworks, the review aims to chart a course for the effective utilization of B. velezensis. Key points: • B. velezensis fights phytopathogens, boosting biotech potential • B. velezensis shapes agri-biotech future, offers sustainable solutions • Explores plant-B. velezensis dialogue, lipopeptide potential showcased [ABSTRACT FROM AUTHOR]

For the first time, five lead-resistant bacteria were isolated from the marine water and sediments of Versova Creek, Mumbai, India, and analysed for their bioflocculation-assisted bioremediation potential. Based on 16 S rRNA sequencing and BLAST, the isolates matched the genera Bacillus and Enterobacter. They exhibited robust growth in media amended with 1600 mg/l of lead nitrate, with a minimum inhibitory concentration (MIC) of 2000 mg/l. The optimum growth parameters were determined to be 37ºC and pH 7. Gram staining and colony morphology identified PbR01 and PbR02 as Gram-positive, while PbR03, PbR04, and PbR05 were Gram-negative. Bacillus sp. AKVPbR02 demonstrated exceptional lead removal efficiency, eliminating 74% and 89.5% of Pb(II) at an initial concentration of 400 mg/l after 72 and 120 h of incubation, respectively. Enterobacter sp. AKVPbR04 also exhibited high removal efficiency, achieving 89.49% removal by the 5th day (120 h) of incubation. Other strains, including Enterobacter sp. AKVPbR03, Bacillus sp. AKVPbR01, and Enterobacter sp. AKVPbR05, removed 87.70%, 83.52%, and 82.76% of Pb(II), respectively, by the same incubation period. The isolates displayed diverse biochemical profiles. All demonstrated urease activity except PbR05, while only PbR02 exhibited β-glucuronidase activity. Most isolates could metabolize a range of sugars, including sucrose, D-sorbitol, and D-trehalose. Nitrogen source utilization varied, with all isolates capable of utilizing lysine and ornithine except PbR05. Antibiotic sensitivity testing revealed varied resistance and susceptibility patterns. For example, PbR01, PbR02, PbR04, and PbR05 were sensitive to azithromycin and erythromycin, while PbR03 exhibited resistance. Most isolates showed resistance to penicillin and piperacillin but were sensitive to ampicillin/sulbactam. [ABSTRACT FROM AUTHOR]

The presence of bacteria from the Dickeya spp. and Pectobacterium spp. in farmlands leads to global crop losses of over $420 million annually. Since 1982, the scientists have started to suspect that the development of disease symptoms in crops might be inhibited by bacteria present in the soil. Here, we characterized in terms of physicochemical properties and the composition of bacterial soil microbiota two fields differing, on the basis of long-term studies, in the occurrence of Dickeya spp.- and Pectobacterium spp.-triggered infections. Majority, i.e. 17 of the investigated physicochemical features of the soils collected from two fields of either low or high potato blackleg and soft rot diseases incidences turned out to be similar, in contrast to the observed 4 deviations in relation to Mg, Mn, organic C and organic substance contents. By performing microbial cultures and molecular diagnostics-based identification, 20 Pectobacterium spp. strains were acquired from the field showing high blackleg and soft rot incidences. In addition, 16S rRNA gene amplicon sequencing followed by bioinformatic analysis revealed differences at various taxonomic levels in the soil bacterial microbiota of the studied fields. We observed that bacteria from the genera Bacillus, Rumeliibacillus, Acidobacterium and Gaiella turned out to be more abundant in the soil samples originating from the field of low comparing to high frequency of pectinolytic bacterial infections. In the herein presented case study, it is shown for the first time that the composition of bacterial soil microbiota varies between two fields differing in the incidences of soft rot and blackleg infections. [ABSTRACT FROM AUTHOR]

Background: Sugarcane red rot is a soil-borne disease caused by Colletotrichum falcatum. It can reduce the yield of sugarcane and the purity of sugarcane juice, which seriously restricts the development of sucrose industry. Biocontrol bacteria can control diseases by regulating rhizosphere microecology. In this study, the effects of biocontrol bacteria on sugarcane rhizosphere microecology were studied by metagenomics and metabolomics, and the control effects of biocontrol bacteria and rhizosphere dominant bacteria on sugarcane red rot were further explored by pot experiment. Results: The results of metagenomic sequencing showed that inoculation with B. velezensis YC89 and pathogens could significantly change the microbial diversity of the sugarcane rhizosphere. The relative abundance of beneficial strains such as Streptomyces, Burkholderia, Sphingomonas, and Rhizobium increased significantly in the rhizosphere of sugarcane in the YC treatment group. Pseudomonas was significantly enriched in the rhizosphere of sugarcane in the C treatment group. The results of metabolome sequencing showed that the content of amino acids in sugarcane root exudates increased after inoculation with B. velezensis YC89, and the contents of phenolic acids and flavonoids decreased. Spearman correlation analysis showed that there was a significant correlation between differential metabolites and rhizosphere microorganisms. The results of pot experiment showed that YC89 strain and three rhizosphere microorganisms could significantly reduce the disease index of red rot and promote the growth of sugarcane plants. In addition, these strains can also significantly increase the JA and SA content of sugarcane leaves and induce plant system resistance-related enzyme activities. Among them, the synthetic community treatment group had the best biocontrol effect on red rot, and its relative control effect was 67.50%. Conclusions: Therefore, we conclude that B. velezensis YC89 could recruit beneficial rhizosphere microorganisms to enrich the rhizosphere and change the content of some phenolic acids and flavonoids in the root exudates. In addition, the isolated rhizosphere dominant bacteria and YC89 strain can resist red rot by inducing plant systemic resistance and promote the growth of sugarcane plants. This study provides a theoretical basis for the use of biocontrol bacteria to regulate rhizosphere bacteria to jointly control plant soil-borne diseases. [ABSTRACT FROM AUTHOR]

A series of novel 5-oxo-1-(thiazol-2-yl)pyrrolidine-3-carboxylic acids were synthesized via condensation of 2-aminothiazole derivatives and itaconic acid by heating without a solvent. An ester and amide of 1-(benzothiazol-2-yl)-5-oxopyrrolidine-3-carboxylic acid were obtained. 1-(6-Nitrobenzo[d]thiazol-2-yl)- and 1-{5-[(4-nitrophenyl)sulfonyl]thiazol-2-yl}-5-oxopyrrolidine-3-carboxylic acids exhibited bacteriostatic activity against the Gram-positive bacterium Bacillus subtilis ATCC 6633 strain. [ABSTRACT FROM AUTHOR]

We studied the influence of metabolites of permafrost microorganisms obtained at different temperature incubation conditions on activity of differentiation of regulatory (Treg) and effector T lymphocytes. It was found that the effect of metabolites is largely regulated by their type that depends on the temperature of production ("cold" at 5°C, "medium temperature" at 22°C, and "warm" at 37°C). The studied metabolites influenced the differentiation of Tregs (CD4+CD25hiCD127—) and the expression of markers of early (CD69), middle (CD25), and late (HLA DR) activation of CD4+ and CD8+ T lymphocytes. In the case of "cold" metabolites, the increase in Treg levels was associated with a decrease in the intensity of CD4+ T lymphocyte differentiation, and under the influence of "warm" metabolites — with a decrease in the activity of CD8+ T lymphocyte differentiation. Under the influence of "medium-temperature" metabolites, Tregs had approximately the same effect on the intensity of CD4+ and CD8+ T lymphocyte differentiation. [ABSTRACT FROM AUTHOR]

We established confrontations between two different fungi, i.e., the maize anthracnose and stalk rot pathogen Colletotrichum graminicola, and the ubiquitous fungus Aspergillus nidulans, and different biocontrol species, i.e., Bacillus subtilis, Bacillus velezensis, and Bacillus amyloliquefaciens. In all fungus–bacterium confrontations tested, growth arrest and, thus, distance inhibition was observed on solid substrata. LC–MS/MS analyses of culture filtrates suggested formation of several metabolites only synthesized in confrontations. Interestingly, microscopy of fungal hyphae grown in liquid medium showed protrusions and color changes occurred only in media harboring fungus-bacterium confrontations. These observations indicate metabolic re-programming and suggest formation of putative secondary metabolites in interactions involving microbial biocontrol agents. [ABSTRACT FROM AUTHOR]

Introduction: Microbial communities affect several aspects of the earth's ecosystem through their metabolic interaction. The dynamics of this interaction emerge from complex multilevel networks of crosstalk. Elucidation of this interaction could help us to maintain the balance for a sustainable future. Objectives: To investigate the chemical language among highly abundant microbial genera in the rhizospheres of medicinal plants based on the metabolomic analysis at the interaction level. Methods: Coculturing experiments involving three microbial species: Aspergillus (A), Trichoderma (T), and Bacillus (B), representing fungi (A, T) and bacteria (B), respectively. These experiments encompassed various interaction levels, including dual cultures (AB, AT, TB) and triple cultures (ATB). Metabolic profiling by LC-QTOFMS revealed the effect of interaction level on the productivity and diversity of microbial specialized metabolites. Results: The ATB interaction had the richest profile, while the bacterial profile in the monoculture condition had the lowest. Two native compounds of the Aspergillus genus, aspergillic acid and the dipeptide asperopiperazine B, exhibited decreased levels in the presence of the AT interaction and were undetectable in the presence of bacteria during the interaction. Trichodermarin N and Trichodermatide D isolated from Trichoderma species exclusively detected during coexistence with bacteria (TB and ATB). These findings indicate that the presence of Bacillus activates cryptic biosynthetic gene clusters in Trichoderma. The antibacterial activity of mixed culture extracts was stronger than that of the monoculture extracts. The TB extract exhibited strong antifungal activity compared to the monoculture extract and other mixed culture treatments. Conclusion: The elucidation of medicinal plant microbiome interaction chemistry and its effect on the environment will also be of great interest in the context of medicinal plant health Additionally, it sheds light on the content of bioactive constituents, and facilitating the discovery of novel antimicrobials. [ABSTRACT FROM AUTHOR]

Context: Xylanases derived from Bacillus species hold significant importance in various large-scale production sectors, with increasing demand driven by biofuel production. However, despite their potential, the extreme environmental conditions often encountered in production settings have led to their underutilisation. To address this issue and enhance their efficacy under adverse conditions, we conducted a theoretical investigation on a group of five Bacillus species xylanases belonging to the glycoside hydrolase GH11 family. Bacillus sp. NCL 87–6-10 (sp_NCL 87–6-10) emerged as a potent candidate among the selected biocatalysts; this Bacillus strain exhibited high thermal stability and achieved a transition state with minimal energy requirements, thereby accelerating the biocatalytic reaction process. Our approach aims to provide support for experimentalists in the industrial sector, encouraging them to employ structural-based reaction modelling scrutinisation to predict the ability of targeted xylanases. Methods: Utilising crystal structure data available in the Carbohydrate-Active enzymes database, we aimed to analyse their structural capabilities in terms of thermal-stability and activity. Our investigation into identifying the most prominent Bacillus species xylanases unfolds with the help of the semi-empirical quantum mechanics MOPAC method integrated with the DRIVER program is used in calculations of reaction pathways to understand the activation energy. Additionally, we scrutinised the selected xylanases using various analyses, including constrained network analyses, intermolecular interactions of the enzyme–substrate complex and molecular orbital assessments calculated using the AM1 method with the MO-G model (MO-G AM1) to validate their reactivity. [ABSTRACT FROM AUTHOR]

The connection between the traditional Chinese medicinal herb Bletilla striata and microorganisms is still not well understood. Our study aimed to uncover the structure and diversity of the fungal and bacterial communities associated with B. striata. Bioinformatics, biocontrol and biochemical experiments were carried out. In terms of relative abundance of the top 15 phyla of microbial species, tenericutes in stems (58.74%) and roots (39.36%) showed the highest relative abundance, while cyanobacteria in leaves presented the most (64.53%). At the genus level, there were 32 genera of bacteria detected in three tissues. Sphingomonas showed relative abundances in leaves (41.54%) and stems (22.68%), while Paraburkholderia showed the highest relative abundance in roots (20.87%). In contrast, the dominant genera of the fungi were Melampsora (28.55–43.61%) and Cryptococcus (6.1-25.56%) among the top 15 genera of fungi species. Twenty microorganisms were obtained from roots, stems, and leaves and isolated, which also confirmed the results of the bioinformatics analysis. The isolated Bacillus velezensis exhibits the capability to enhance both the growth and nutrient accumulation of B. striata. Additionally, B. velezensis, along with its fermentation products, contributes to the improvement of antioxidant enzyme activity. Notably, there are variations in the species and abundance of microflora present in the leaves, stems, and roots of B. striata at both the phylum and genus levels. The components of the microbial flora that were isolated and identified align with the results obtained from bioinformatic analyses. It is noteworthy that B. velezensis exerts a positive impact on the increase in yield of B. striata. This work provides important insights into B. striata-associated microorganisms that are essential for promoting growth and disease resistance by revealing the complex structure and variety of fungal and bacterial communities. [ABSTRACT FROM AUTHOR]

Acetaldehyde (AL), a primary carcinogen, not only pollutes the environment, but also endangers human health after drinking alcohol. Here a promising bacterial strain was successfully isolated from a white wine cellar pool in the province of Shandong, China, and identified as Bacillus velezensis-YW01 with 16 S rDNA sequence. Using AL as sole carbon source, initial AL of 1 g/L could be completely biodegraded by YW01 within 84 h and the cell-free extracts of YW01 has also been detected to biodegrade the AL, which indicate that YW01 is a high-potential strain for the biodegradation of AL. The optimal culture conditions and the biodegradation of AL of YW01 are at pH 7.0 and 38 °C, respectively. To further analyze the biodegradation mechanism of AL, the whole genome of YW01 was sequenced. Genes ORF1040, ORF1814 and ORF0127 were revealed in KEGG, which encode for acetaldehyde dehydrogenase. Furthermore, ORF0881 and ORF052 encode for ethanol dehydrogenase. This work provides valuable information for exploring metabolic pathway of converting ethanol to AL and subsequently converting AL to carboxylic acid compounds, which opened up potential pathways for the development of microbial catalyst against AL. [ABSTRACT FROM AUTHOR]

Considerable efforts that isolate and characterize degrading bacteria for polycyclic aromatic hydrocarbons (PAHs) have focused on contaminated environments so far. Here we isolated three distinctive pyrene (PYR)-degrading bacteria from a paddy soil that was not contaminated with PAHs. These included a novel Bacillus sp. PyB-9 and efficient degraders, Shigella sp. PyB-6 and Agromyces sp. PyB-10. All three strains could utilize naphthalene, phenanthrene, anthracene, fluoranthene and PYR as sole carbon sources, and degraded PYR in a range of temperatures (27–37 °C) and pH (5–8). Strains PyB-6 and PyB-10 almost completely degraded 50 mg L−1 PYR within 15 days, and 75.5% and 98.9% of 100 mg L−1 PYR in 27 days, respectively. The kinetics of PYR biodegradation was well represented by the Gompertz model. Ten and twelve PYR metabolites were identified in PYR degradation process by strains PyB-6 and PyB-10, respectively. Chemical analyses demonstrated that the degradation mechanisms of PYR were the same for strains PyB-6 and PyB-10 with initial dioxygenation mainly on C-4,5 positions of PYR. The degradation of 4,5-phenanthrenedicarboxylic acid was branched to 4-phenanthrenecarboxylic acid pathway and 5-hydroxy-4-phenanthrenecarboxylic acid pathway, both of which played important roles in PYR degradation by strains PyB-6 and PyB-10. To our knowledge, Shigella sp. and Agromyces sp. were found for the first time to possess the capability for PAHs degradation. These findings contributed to upgrading the bank of microbial resource and knowledge on PAH biodegradation. [ABSTRACT FROM AUTHOR]

The present work reports the application of novel gut strains Bacillus safensis CGK192 (Accession No. OM658336) and Bacillus australimaris CGK221 (Accession No. OM658338) in the biological degradation of synthetic polymer i.e., high-density polyethylene (HDPE). The biodegradation assay based on polymer weight loss was conducted under laboratory conditions for a period of 90 days along with regular evaluation of bacterial biomass in terms of total protein content and viable cells (CFU/cm2). Notably, both strains achieved significant weight reduction for HDPE films without any physical or chemical pretreatment in comparison to control. Hydrophobicity and biosurfactant characterization were also done in order to assess strains ability to form bacterial biofilm over the polymer surface. The post-degradation characterization of HDPE was also performed to confirm degradation using analytical techniques such as Fourier transform infrared spectroscopy (FTIR), X-ray diffraction (XRD), Field emission scanning electronic microscopy (FE-SEM) coupled with energy dispersive X-ray (EDX), and Gas chromatography–mass spectrometry (GC–MS). Interestingly strain CGK221 was found to be more efficient in forming biofilm over polymer surface as indicated by lower half-life (i.e., 0.00032 day−1) and higher carbonyl index in comparison to strain CGK192. The findings reflect the ability of our strains to develop biofilm and introduce an oxygenic functional group into the polymer surface, thereby making it more susceptible to degradation. [ABSTRACT FROM AUTHOR]

Soil microbiome science, rapidly evolving, predominantly focuses on field crop soils. However, understanding garden soil microbiomes is essential for enhancing food production sustainability in garden environments. This study aimed to unveil the bacteriome diversity and composition in rooftop garden soils (RGS) and surface garden soils (SGS) across urban (Dhaka North and Dhaka South City Corporations) and peri-urban (Gazipur City Corporation) areas of Dhaka Division, Bangladesh. We analyzed 11 samples, including six RGS and five SGS samples from 11 individual gardens using 16S rRNA (V3–V4 region) gene-based amplicon sequencing. A total of 977 operational taxonomic units (OTUs), including 270 and 707 in RGS and SGS samples, respectively, were identified. The observed OTUs were represented by 21 phyla, 45 classes, 84 orders, 173 families, and 293 genera of bacteria. Alpha diversity indices revealed significantly higher bacterial diversity in SGS samples (p = 0.01), while beta diversity analyses indicated distinct bacteriome compositions between RGS and SGS samples (p = 0.028, PERMANOVA). Despite substantial taxonomic variability between sample categories, there was also a considerable presence of shared bacterial taxa. At the phylum level, Bacilliota (61.14%), Pseudomonadota (23.42%), Actinobacteria (6.33%), and Bacteroidota (3.32%) were the predominant bacterial phyla (comprising > 94.0% of the total abundances) in both types of garden soil samples. Of the identified genera, Bacillus (69.73%) and Brevibacillus (18.81%) in RGS and Bacillus (19.22%), Methylophaga (19.21%), Acinetobacter (6.27%), Corynebacterium (5.06%), Burkholderia (4.78%), Paracoccus (3.98%) and Lysobacter (2.07%) in SGS were the major bacterial genera. Importantly, we detected that 52.90% of genera were shared between RGS and SGS soil samples. Our data reveal unique and shared bacteriomes with probiotic potential in soil samples from both rooftop and surface gardens. Further studies should explore the functional roles of shared bacterial taxa in garden soils and how urban environmental factors affect microbiome composition to optimize soil health and sustainable food production. [ABSTRACT FROM AUTHOR]

Spirodiclofen, an extensively used insecticide/acaricide in fruit crops to mitigate pest-related losses, poses environmental and health risks due to its high toxicity and slow natural biodegradation. To mitigate this problem, bioremediation emerges as a viable solution for eliminating toxic xenobiotics and safeguarding the environment and human diet. In this study, an optimal bioremediation conditions was achieved using Bacillus sp. 6F, isolated from Savannah soil, and the Taguchi factorial experimental design (peptone G, pH 5, 40 ºC, 200 rpm). This optimized approach resulted in the biodegradation of 88% of spirodiclofen (100 mg L−1) within 3 days, while Bacillus sp. CSA-21, isolated from citrus fruits soil, achieved a remarkable 93% degradation in just 2 days. Additionally, under these optimized conditions, 89% of the main metabolite M1, formed during spirodiclofen biodegradation, was effectively remediated within 3 days. Liquid chromatography tandem-mass spectrometry (LC–MS/MS) identified ten metabolites (M1-M10) produced during the spirodiclofen /M1 biodegradation process. This study presents an efficient, and fast decontamination protocol, marking a significant advancement in addressing spirodiclofen persistence in the environment. [ABSTRACT FROM AUTHOR]

In this study, we investigated the ozone inactivation efficiency of Bacillus atrophaeus spores attached to various tile surfaces. Eight different types of tiles were employed, considering factors such as porosity (ceramic, porcelain), color (white, black), and glossiness (matte, glossy). Inactivation was performed by exposing the spore-loaded tiles to ozone gas for a specified duration. The inactivation efficiencies of ozone gas on different tile surfaces were compared by analyzing the colony-forming units of desorbed Bacillus atrophaeus cultured in a growth medium. Results revealed a reduction in colony counts with increasing ozone exposure time, indicating a proportional enhancement in inactivation effectiveness on ozone exposure time. After exposure to ozone gas for 30 min or longer, more than 90% of spores on each tile were inactivated. Regarding porosity, ceramic tiles exhibited slightly superior inactivation effects compared to porcelain tiles. Additionally, in terms of glossiness, glossy tiles demonstrated better inactivation effects than matte tiles. However, no significant differences were observed in inactivation effects based on the color of the tiles. [ABSTRACT FROM AUTHOR]