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Copper-based plant protection products (PPPs) are widely used in both conventional and organic farming, and to a lesser extent for non-agricultural maintenance of gardens, greenspaces, and infrastructures. The use of copper PPPs adds to environmental contamination by this trace element. This paper aims to review the contribution of these PPPs to the contamination of soils and waters by copper in the context of France (which can be extrapolated to most of the European countries), and the resulting impacts on terrestrial and aquatic biodiversity, as well as on ecosystem functions. It was produced in the framework of a collective scientific assessment on the impacts of PPPs on biodiversity and ecosystem services in France. Current science shows that copper, which persists in soils, can partially transfer to adjacent aquatic environments (surface water and sediment) and ultimately to the marine environment. This widespread contamination impacts biodiversity and ecosystem functions, chiefly through its effects on phototrophic and heterotrophic microbial communities, and terrestrial and aquatic invertebrates. Its effects on other biological groups and biotic interactions remain relatively under-documented., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

Detecting and identifying predators quickly is key to survival. According to the Snake Detection Theory (SDT), snakes have been a substantive threat to primates for millions of years, so that dedicated visual skills were tuned to detect snakes in early primates. Past experiments confronted the SDT by measuring how fast primate subjects detected snake pictures among non-dangerous distractors (e.g., flowers), but did not include pictures of primates' other predators, such as carnivorans, raptors, and crocodilians. Here, we examined the detection abilities of N = 19 Tonkean macaques (Macaca tonkeana) and N = 6 rhesus macaques (Macaca mulatta) to spot different predators. By implementing an oddity task protocol, we recorded success rates and reaction times to locate a deviant picture among four pictures over more than 400,000 test trials. Pictures depicted a predator, a non-predator animal, or a simple geometric shape. The first task consisted of detecting a deviant picture among identical distractor pictures (discrimination) and the second task was designed to evaluate detection abilities of a deviant picture among different distractor pictures (categorization). The macaques detected pictures of geometric shapes better and faster than pictures of animals, and were better and faster at discriminating than categorizing. The macaques did not detect snakes better or faster than other animal categories. Overall, these results suggest that pictures of snakes do not capture visual attention more than other predators, questioning previous findings in favor of the SDT., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

The present investigation determines the persistence of herbicides like butachlor and pretilachlor in Indian soil, and their impact on soil biological properties including microbial biomass carbon (MBC), total microbial population numbers, and enzyme activities. Butachlor was degraded faster in autumn rice soil (t 1/2 of 10-13 days) than in winter rice soil (half-life of 16-18 days). The t 1/2 of pretilachlor in winter rice was 12-16 days. Regardless of the seasons under cultivation, no pesticide residue was detected in rice at harvest. Herbicides induced an initial decline (0-14th days after application) in MBC (averages of 332.7-478.4 g g -1 dry soil in autumn rice and 299.6-444.3 g g -1 dry soil in winter rice), microbial populations (averages of 6.4 cfu g -1 in autumn rice and 4.6 cfu g -1 in winter rice), and phosphatase (averages of 242.6-269.3 μg p-nitrophenol g -1 dry soil h -1 in autumn rice and 188.2-212.2 μg p-nitrophenol g -1 dry soil h -1 in winter rice). The application of herbicides favored dehydrogenase (averages of 123.1-156.7 g TPF g -1 dry soil in autumn and 126.7-151.1 g TPF g -1 dry soil in winter) and urease activities (averages of 279.0-340.4 g NH 4 g -1 soil 2 h -1 in autumn and 226.7-296.5 g NH 4 g -1 soil 2 h -1 in winter) in rice soil at 0-14th DAA. The study suggests that applications of butachlor and pretilachlor at the rates of 1000 g ha -1 and 750 g ha -1 , respectively, to control the weeds in the transplanted rice fields do not have any negative impact on the harvested rice and associated soil environment., (© 2023. The Author(s), under exclusive licence to Springer Nature Switzerland AG.)

The evaluation of soil quality requires the use of robust methods to assess biologically based indicators. Among them, enzyme activities are used for several decades, but there is a clear need to update their measurement methods for routine use, in combining feasibility, accuracy, and reliability. To this end, the platform Biochem-Env optimized a miniaturized method to measure enzyme activities in soils using colorimetric substrates in micro-well plates. The standardization of the method was carried out within the framework of ISO/TC 190/SC 4/WG 4 "Soil quality - Biological methods" workgroup, recommending an inter-laboratory evaluation for the publication of a full ISO standard. That evaluation, managed by the platform, was based on the measurement, in six soils of contrasted physicochemical properties, of the ten soil enzyme activities described in the standard. Eight laboratories were involved in the validation study. Only 2.7% of outliers were identified from the analyses of the whole dataset. The repeatability and reproducibility of the method were determined by computing, respectively, the intra-laboratory (CV r ,) and inter-laboratory (CV R ) coefficients of variation for each soil and enzyme. The mean CV r ranged from 4.5% (unbuffered phosphatase) to 9.9% (α-glucosidase), illustrating a reduced variability of enzyme activities within laboratories. The mean CV R ranged from 13.8% (alkaline phosphatase) to 30.9% (unbuffered phosphatase). Despite this large CV R noticed for unbuffered phosphatase, the method was repeatable, reproducible, and sensitive. It also proved to be applicable for measuring enzyme activities in different types of soils. These results have been found successful by ISO/TC 190/SC4 and resulted in the publication of ISO 20130:2018 standard., (© 2021. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

While road network expansion is crucial for economic development, it can cause a notable disturbance of fauna, especially in protected area in terms of habitat fragmentation, risk of collision, and also indirect threat such as pollution. In this study, we monitored the 4.6-km long tarmac road crossing the Kibale National Park in Uganda, home to a rich variety of wild species including the endangered chimpanzees. We evaluated the effects of collisions and pollution, as well as the impact of the renovation process in terms of disturbance and the mitigation measures deployed. This survey reports the death of 24 wild animals killed by cars, including two chimpanzees. The atmospheric concentrations of O 3 , NO 2 , SO 2 , and BTEX did not exceed recommended limits. More than 5000 plastic bottles were collected along the road within 4 months, and for the first time, the presence of BPA and BPS was detected in the hairs of wild chimpanzees. The road bisecting the Kibale National Park poses a high danger in terms of traffic and an underestimated risk related to plastic pollution. Measures (signpost, speed bumps) should be urgently deployed to decrease the risk posed by the renovated road for emblematic species such as chimpanzees, which are crucial for tourism and economy in Uganda.

In collective movements, some individuals are more effective and attractive leaders than others. Parameters such as social network, personality, and physiologic needs failed to explain why group members follow one leader more than another. In this study in the domestic horse, we propose to focus on the leader's attitude and its impact to the followers' recruitment during two conditions: spontaneous group departures or experimentally induced departures. We postulate that the expressiveness of the leader could enhance its attractiveness and thus produce a successful followership. We found that a high expressiveness level is associated with a high curiosity score and with a low social status. This propensity to initiate while being expressive was higher in the experimental condition than in the spontaneous condition which was expected, since the experimental procedure sought to increase the motivation of initiators with a highly appetent reward. Moreover, the more intense the leader's expressiveness is, the faster the followers will join the movement regardless of the condition. This positive and dynamic attitude can be perceived as an attractive feature by the followers. Finally, we evidenced collective arousal in followers initiated by the leader that could be essential for group cohesion. The present study is the first to investigate the expressiveness level in animals, and provides new insights into the emergence of leadership.

Polyploidy or whole genome duplication is a frequent and recurrent phenomenon in flowering plants that has played a major role in their diversification, adaptation and speciation. The adaptive success of polyploids relates to the different evolutionary fates of duplicated genes. In this study, we explored the impact of the whole genome triplication (WGT) event in the Brassiceae tribe on the genes involved in the self-incompatibility (SI) signalling pathway, a mechanism allowing recognition and rejection of self-pollen in hermaphrodite plants. By taking advantage of the knowledge acquired on this pathway as well as of several reference genomes in Brassicaceae species, we determined copy number of the different genes involved in this pathway and investigated their structural and functional evolutionary dynamics. We could infer that whereas most genes involved in the SI signalling returned to single copies after the WGT event (i.e. ARC1, JDP1, THL1, THL2, Exo70A01) in diploid Brassica species, a few were retained in duplicated (GLO1 and PLDα) or triplicated copies (MLPK). We also carefully studied the gene structure of these latter duplicated genes (including the conservation of functional domains and active sites) and tested their transcription in the stigma to identify which copies seem to be involved in the SI signalling pathway. By taking advantage of these analyses, we then explored the putative origin of a contrasted SI phenotype between two Brassica rapa varieties that have been fully sequenced and shared the same S-allele (S60).

Tropical rainforest soils harbor a considerable diversity of soil fauna that contributes to emissions of N 2 O. Despite their ecological dominance, there is limited information available about the contribution of epigeal ant mounds to N 2 O emissions in these tropical soils. This study aimed to determine whether ant mounds contribute to local soil N emissions in the tropical humid rainforest. N 2 O emission was determined in vitro from individual live ants, ant-processed mound soils, and surrounding reference soils for two trophically distinct and abundant ant species: the leaf-cutting Atta mexicana and omnivorous Solenopsis geminata. The abundance of total bacteria, nitrifiers (AOA and AOB), and denitrifiers (nirK, nirS, and nosZ) was estimated in these soils using quantitative PCR, and their respective mineral N contents determined. There was negligible N 2 O emission detected from live ant individuals. However, the mound soils of both species emitted significantly greater (3-fold) amount of N 2 O than their respective surrounding reference soils. This emission increased significantly up to 6-fold in the presence of acetylene, indicating that, in addition to N 2 O, dinitrogen (N 2 ) is also produced from these mound soils at an equivalent rate (N 2 O/N 2  = 0.57). Functional gene abundance (nitrifiers and denitrifiers) and mineral N pools (ammonium and nitrate) were significantly greater in mound soils than in their respective reference soils. Furthermore, in the light of the measured parameters and their correlation trends, nitrification and denitrification appeared to represent the major N 2 O-producing microbial processes in ant mound soils. The ant mounds were estimated to contribute from 0.1 to 3.7% of the total N 2 O emissions of tropical rainforest soils.

Key Message: Only few genetic loci are sufficient to increase the variation of bolting time in Beta vulgaris dramatically, regarding vernalization requirement, seasonal bolting time and reproduction type. Beta species show a wide variation of bolting time regarding the year of first reproduction, seasonal bolting time and the number of reproduction cycles. To elucidate the genetics of bolting time control, we used three F 3 mapping populations that were produced by crossing a semelparous, annual sugar beet with iteroparous, vernalization-requiring wild beet genotypes. The semelparous plants died after reproduction, whereas iteroparous plants reproduced at least twice. All populations segregated for vernalization requirement, seasonal bolting time and the number of reproduction cycles. We found that vernalization requirement co-segregated with the bolting locus B on chromosome 2 and was inherited independently from semel- or iteroparous reproduction. Furthermore, we found that seasonal bolting time is a highly heritable trait (h 2  > 0.84), which is primarily controlled by two major QTL located on chromosome 4 and 9. Late bolting alleles of both loci act in a partially recessive manner and were identified in both iteroparous pollinators. We observed an additive interaction of both loci for bolting delay. The QTL region on chromosome 4 encompasses the floral promoter gene BvFT2, whereas the QTL on chromosome 9 co-localizes with the BR 1 locus, which controls post-winter bolting resistance. Our findings are applicable for marker-assisted sugar beet breeding regarding early bolting to accelerate generation cycles and late bolting to develop bolting-resistant spring and winter beets. Unexpectedly, one population segregated also for dwarf growth that was found to be controlled by a single locus on chromosome 9.

This study examined the long-term effects of the landfill disposal of untreated urban waste for soil fertilization on the prevalence and antibiotic resistance profiles of various human opportunistic pathogens in soils from Burkina Faso. Samples were collected at three sites in the periphery of Ouagadougou during two campaigns in 2008 and 2011. At each site, amendment led to changes in physico-chemical characteristics as shown by the increase in pH, CEC, total C, total N, and metal contents. Similarly, the numbers of total heterotrophic bacteria were higher in the amended fields than in the control ones. No sanitation indicators, i.e., coliforms, Staphylococci, and Enterococci, were detected. Pseudomonas aeruginosa and Burkholderia cepacia complex (Bcc) were detected at a low level in one amended field. Stenotrophomonas maltophilia was detected from both campaigns at the three sites in the amended fields and only once in an unamended field. Diversity analysis showed some opportunistic pathogen isolates to be closely related to reference clinical strains responsible for nosocomial- or community-acquired infections in Northern countries. Antibiotic resistance tests showed that P. aeruginosa and Bcc isolates had a wild-type phenotype and that most S. maltophilia isolates had a multi-drug resistance profile with resistance to 7 to 15 antibiotics. Then we were able to show that amendment led to an increase of some human opportunistic pathogens including multi-drug resistant isolates. Although the application of untreated urban waste increases both soil organic matter content and therefore soil fertility, the consequences of this practice on human health should be considered.

Evaluating the effects of climate variation on ecosystems is of paramount importance for our ability to forecast and mitigate the consequences of global change. However, the ways in which complex food webs respond to climate variations remain poorly understood. Here, we use long-term time series to investigate the effects of temperature variation on the intraguild-predation (IGP) system of Windermere (UK), a lake where pike (Esox lucius, top predator) feed on small-sized perch (Perca fluviatilis) but compete with large-sized perch for the same food sources. Spectral analyses of time series reveal that pike recruitment dynamics are temperature controlled. In 1976, expansion of a size-truncating perch pathogen into the lake severely impacted large perch and favoured pike as the IGP-dominant species. This pathogen-induced regime shift to a pike-dominated IGP apparently triggered a temperature-controlled trophic cascade passing through pike down to dissolved nutrients. In simple food chains, warming is predicted to strengthen top-down control by accelerating metabolic rates in ectothermic consumers, while pathogens of top consumers are predicted to dampen this top-down control. In contrast, the local IGP structure in Windermere made warming and pathogens synergistic in their top-down effects on ecosystem functioning. More generally, our results point to top predators as major mediators of community response to global change, and show that size-selective agents (e.g. pathogens, fishers or hunters) may change the topological architecture of food webs and alter whole ecosystem sensitivity to climate variation.

In primates, the perception of bitter taste may be an essential mechanism for avoiding the ingestion of bitter, and often toxic, substances. Bitterness sensitivity varies across the different primate species and, for bitter thioure substances (e.g., phenylthiocarbamide-PTC), within species. Primates respond to bitterness by displaying aversive affective reactions, and whether these serve for conspecifics as information on the taste of food is still unclear. The aim of this study was to investigate the response to two bitter substances (quinine and PTC) in 11 primate species (N = 29 individuals) hosted at the Ménagerie du Jardin des Plantes, in relation to their main diet tendency and weaning age. We tested primate reactions to bitterness with a two-bottle method. The study individuals showed a strong aversion to bitter taste, minimizing consumption of both bitter solutions. All of the individuals were PTC-taster phenotypes, but the degrees of sensitivity to PTC varied among the individuals. Across-species comparisons revealed that whereas the degree of frugivory of the species had a negative effect on the consumption of bitter solutions by the individuals, a later weaning age seems to be a better predictor for the occurrence of aversive affective reactions. Although the low sample size does not allow for excluding interindividual variability, our results support the hypothesis that affective reactions to bitterness may be trustworthy information for conspecifics during the learning process. Thus, the evolution of the appropriate perceiver systems to convert affective displays into true affective signals could be a shared trait among human and nonhuman primates.

The consequences of diversity on belowground processes are still poorly known in tropical forests. The distributions of very fine roots (diameter <1 mm) and fine roots (diameter <3 mm) were studied in a randomized block design close to the harvest age of fast-growing plantations. A replacement series was set up in Brazil with mono-specific Eucalyptus grandis (100E) and Acacia mangium (100A) stands and a mixture with the same stocking density and 50% of each species (50A:50E). The total fine root (FR) biomass down to a depth of 2 m was about 27% higher in 50A:50E than in 100A and 100E. Fine root over-yielding in 50A:50E resulted from a 72 % rise in E. grandis fine root biomass per tree relative to 100E, whereas A. mangium FR biomass per tree was 17% lower than in 100A. Mixing A. mangium with E. grandis trees led to a drop in A. mangium FR biomass in the upper 50 cm of soil relative to 100A, partially balanced by a rise in deep soil layers. Our results highlight similarities in the effects of directional resources on leaf and FR distributions in the mixture, with A. mangium leaves below the E. grandis canopy and a low density of A. mangium fine roots in the resource-rich soil layers relative to monospecific stands. The vertical segregation of resource-absorbing organs did not lead to niche complementarity expected to increase the total biomass production.

Behavioral and cognitive studies on captive apes often pay little attention to the specific environmental conditions of their study subjects. A recent report form Byrne et al. (Anim Cogn doi: 10.1007/s10071-011-0403-8, 2011), comparing nettle-feeding techniques between captive and wild gorillas, claimed to document "the strongest evidence yet to come from any great ape that observational learning of a skilled conspecific" can allow social learning and culture in gorillas. An earlier study with similar findings placed emphasis instead on the many similarities and claims for species typical behavior, thus a genetic hypothesis instead of a cultural hypothesis. This commentary aims at formulating a third environmental hypothesis based on path-dependent behavioral differences owing to different diet and availability of nutritional resources of wild and captive gorillas. Captive diet provides gorillas with a much lower concentration of fibers. Gorillas are hindgut fermenters, and this deficit of natural fermentation of fibers may impact their health and their behavior in zoos. Results of Byrne et al.'s study will be discussed comparing feeding choice and availability of nutritional resources of wild and captive gorillas, showing that in captivity gorilla, motivation to consume certain food or certain plant parts may differ drastically from that of wild gorillas. This view does not intend to deny that social learning and culture may exist in gorillas, but to guide and encourage future works investigating social learning in great apes to take more accurately into account the living conditions and, when comparing populations, the possible environmental differences., (© Springer-Verlag 2011)

In apes, four criteria are set to explore referential and intentional communication: (1) successive visual orienting between a partner and distant targets, (2) the presence of apparent attention-getting behaviours, (3) the requirement of an audience to exhibit the behaviours, and (4) the influence of the direction of attention of an observer on the behaviours. The present study aimed at identifying these criteria in behaviours used by dogs in communicative episodes with their owner when their toy is out of reach, i.e. gaze at a hidden target or at the owner, gaze alternation between a hidden target and the owner, vocalisations and contacts. In this study, an additional variable was analysed: the position of the dog in relation to the location of the target. Dogs witnessed the hiding of a favourite toy, in a place where they could not get access to. We analysed how dogs engaged in communicative deictic behaviours in the presence of their owner; four heights of the target were tested. To control for the motivational effects of the toy on the dogs' behaviour and for the referential nature of the behaviours, observations were staged where only the toy or only the owner was present, for one of the four heights. The results show that gazing at the container and gaze alternation were used as functionally referential and intentional communicative behaviours. Behavioural patterns of dog position, the new variable, fulfilled the operational criteria for functionally referential behaviour and a subset of operational criteria for intentional communication: the dogs used their own position as a local enhancement signal. Finally, our results suggest that the dogs gazed at their owner at optimal locations in the experimental area, with respect to the target height and their owner's (or their own) line of gaze., (© Springer-Verlag 2011)

Although there are some indications that dogs (Canis familiaris) use the eyes of humans as a cue during human-dog interactions, the exact conditions under which this holds true are unclear. Analysing whether the interactive modalities of guide dogs and pet dogs differ when they interact with their blind, and sighted owners, respectively, is one way to tackle this problem; more specifically, it allows examining the effect of the visual status of the owner. The interactive behaviours of dogs were recorded when the dogs were prevented from accessing food that they had previously learned to access. A novel audible behaviour was observed: dogs licked their mouths sonorously. Data analyses showed that the guide dogs performed this behaviour longer and more frequently than the pet dogs; seven of the nine guide dogs and two of the nine pet dogs displayed this behaviour. However, gazing at the container where the food was and gazing at the owner (with or without sonorous mouth licking), gaze alternation between the container and the owner, vocalisation and contact with the owner did not differ between groups. Together, the results suggest that there is no overall distinction between guide and pet dogs in exploratory, learning and motivational behaviours and in their understanding of their owner's attentional state, i.e. guide dogs do not understand that their owner cannot see (them). However, results show that guide dogs are subject to incidental learning and suggest that they supplemented their way to trigger their owners' attention with a new distal cue.