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One of the most pressing global environmental issues is the widespread abundance and distribution of microplastics (MPs). MPs can act as vectors for other contaminants in the environment making these small plastic particles hazardous for ecosystems. The presence of MPs in aquatic environments may pose threats to aquatic organisms that ingest them. This study examined effects of abamectin (ABM) and polyethylene terephthalate (PET) MP fragments on histopathological and enzymatic biomarkers in zebrafish (Danio rerio). Zebrafish were exposed for 96 h to pristine PET-MPs at concentrations of 5 mg/L and 10 mg/L, ABM alone at 0.006 mg/L, and the same concentration of ABM in the presence of PET-MPs in aquaria. Histopathological analysis revealed tissue content changes in liver and kidney in the presence of ABM individually and in combination with MPs. Results of enzymatic analysis showed that MPs increased the bioavailability and toxicity of pesticides due to inhibition of catalase (CAT) and acid phosphatase (ACP) enzymes. However, MPs did not affect the toxicity of ABM for glutathione s-transferase (GST) enzyme. Despite the inhibition of acetylcholinesterase (AChE) in MPs or ABM treatments, and some neurotoxicity, no change in activity of this enzyme and neurotoxicity was observed in the combined MPs and ABM treatments, although toxicity effects of MPs and ABM on zebrafish require more detailed studies., (© 2024. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

Numerous herbal products have been the subject of research regarding their potential role in cancer prevention or adjuvant therapy. Pistacia atlantica and its main phytochemicals have garnered significant attention for their potential anti-cancer effects. The study aimed to assess the growth inhibitory effects of P. atlantica essential oil (PAEO) on MKN-45 and AGS cells. This study quantified the volatile compounds in PAEO using Gas Chromatography-Mass Spectrometry (GC-MS). Subsequently, MKN-45 and AGS cells were treated with varying concentrations of PAEO (5%, 2.5%, 1.25%, 0.625%, 0.3125%, 0.156%, 0.0781%, 0.0391%, 0.0195%) for 24 h. Cell viability was evaluated through the MTT assay. The impact of PAEO on gene expression was investigated by quantifying the mRNA levels of Bax and Bcl2 in the various experimental groups using quantitative Real-Time PCR (qRT-PCR) analysis. Additionally, flow cytometry was utilized to evaluate apoptosis in the treated cells. The analysis of PAEO revealed that α-pinene was the predominant monoterpene, constituting 87.9% of the oil composition. The cytotoxic effects of PAEO were evaluated, and it was found that the oil significantly reduced the viability of MKN-45 and AGS cells. The IC 50 for MKN-45 cells was determined to be 1.94 × 10 -3 % after 24 h of treatment, while for AGS cells the IC 50 was 2.8 × 10 -3 % after 24 h. Additionally, the research revealed that PAEO triggered a notable rise in apoptotic cells in both AGS and MKN-45 cell lines. Moreover, at the molecular level, the findings indicated an increase in Bax expression and a decrease in Bcl2 mRNA expression, providing further evidence of the induction of apoptosis in both MKN-45 and AGS cell lines following PAEO treatment. The findings of this study offer evidence supporting the cytotoxic effects of PAEO on gastric cancer cell lines by promoting apoptosis. The findings suggest that PAEO may offer potential as a therapeutic candidate in managing and treating gastric cancer., (© 2024. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)

To address concerns regarding the potential health risks associated with residual chemicals in food products, this study aimed to assess the concentrations of residual Benomyl, Malathion, and Diazinon in cucumbers and evaluate the associated health risks for consumers. This descriptive study involved the collection of 100 cucumber samples from both field and greenhouse cultivation in Mazandaran Province. These samples were subsequently sent to the laboratory for analysis. Following sample preparation and digestion, we determined the levels of residual Malathion, Benomyl, and Diazinon using HPLC. The results showed an average residual Malathion concentration of 2.1 ± 0.04 mg/kg in field-grown cucumbers and 2.04 ± 1.5 mg/kg in greenhouse-cultivated cucumbers. Meanwhile, the average residual Diazinon concentration was 5.1 ± 0.2 mg/kg in field samples and 4.99 ± 3.23 mg/kg in greenhouse samples. The average concentrations of residual Benomyl were found to be 0.94 ± 0.65 mg/kg in field-grown cucumbers and 0.39 ± 0.2 mg/kg in greenhouse-cultivated cucumbers. Furthermore, a health risk assessment model was employed to evaluate the cumulative risk of these residual pesticides in cucumbers. The analysis revealed that residual Benomyl levels ranged from 0 to 24.33 mg/kg, while Malathion ranged from 0 to 9.25 mg/kg, and Diazinon ranged from 0 to 6.8 mg/kg. Notably, in some areas, the average concentration of all three pesticides exceeded the guidelines set by the WHO and the European Union. Additionally, the cumulative risk assessment (represented by MOE T value of 2655) indicated that the combined presence of residual Malathion, Benomyl, and Diazinon in field-cultivated cucumbers posed a health risk. Based on current per capita consumption rates, the study's health risk index results raised concerns about the safety of consuming these residual byproducts. Given the growing use of chemicals in agricultural and horticultural practices, it is imperative to monitor residual pesticides to assess dietary intake and ensure consumer safety in food production., (© 2023. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)

Many proteins can adopt multiple conformations which are important for their function. This is also true for proteins and domains that are covalently linked to each other. One important example is ubiquitin, which can form chains of different conformations depending on which of its lysine side chains is used to form an isopeptide bond with the C-terminus of another ubiquitin molecule. Similarly, ubiquitin gets covalently attached to active-site residues of E2 ubiquitin-conjugating enzymes. Due to weak interactions between ubiquitin and its interaction partners, these covalent complexes adopt multiple conformations. Understanding the function of these complexes requires the characterization of the entire accessible conformation space and its modulation by interaction partners. Long-range (1.8-10 nm) distance restraints obtained by EPR spectroscopy in the form of probability distributions are ideally suited for this task as not only the mean distance but also information about the conformation dynamics is encoded in the experimental data. Here we describe a computational method that we have developed based on well-established structure determination software using NMR restraints to calculate the accessible conformation space using PELDOR/DEER data., (© 2023. The Author(s).)

This study aimed to investigate the effects of probiotic and yeast extract supplementation on the metabolic, immune, and oxidative status of Sannen goat kids during the weaning challenge. Forty goat kids were randomly assigned to four groups: a probiotic group (Pr) (basal diet + mixture of Bacillus subtilis, Bacillus lechiniformis, Streptococcus Thermophilis, and Enterococcus faecium), a yeast cell wall extract group (YC) (basal diet + Saccharomyces cerevisiae), a probiotic and yeast cell wall extract group (Pr + YC) (basal diet + mixture of probiotic and yeast cell wall extract), and a control group (basal diet). Treatments were administered 21 days prior to weaning (80 ± 2 days of life) until 21 days post-weaning except for the control group. Blood samples were collected at four different time points, including 21 days before weaning, 2 days post-weaning (weaning time), 7 days post-weaning, and 21 days post-weaning. Average levels of triiodothyronine, thyroxine, total protein (TP), albumin, globulin, blood urea nitrogen (BUN), total antioxidant capacity (TAC), serum adenosine deaminase (ADA), nitric oxide (NO), ferritin, glucose, cortisol, triglyceride, non-esterified fatty acid (NEFA), Β-hydroxybutyric acid (BHBA), and body weight were measured. The average levels of cortisol tended to be higher in the Pr group in comparison to the control group (P = 0.07) and the Pr + YC group (P = 0.10). NEFA was found to be higher and tended to be higher in the control group compared to the Pr + YC group (P > 0.001) and Pr group (P = 0.10), respectively. Additionally, the BHBA concentration was higher in the control group compared to the Pr group (P > 0.001). No differences were observed in the concentration of other measured parameters among the treatments. The concentration of cortisol tended to be higher (P = 0.10) at the weaning time as compared to the third sampling time. Furthermore, the concentration of TAC was observed to be higher (P > 0.01) at the weaning time in comparison to the third and fourth sampling times. The concentration of NO was higher (P > 0.01) at the third sampling time when compared to the first sampling time. A reduction in NEFA and BHBA levels may suggest an improvement in the metabolic status of the supplemented animals during the weaning challenge. However, supplementation with probiotics and yeast cell wall extract did not appear to have an effect on the oxidative status of the animals. The increase in TAC and NO levels observed during the weaning time may indicate an increase in oxidative stress during this period., (© 2023. The Author(s), under exclusive licence to Springer Nature B.V.)

One of the primary causes of morbidity and mortality in those with short bowel syndrome (SBS) is sepsis, caused by bacterial translocation (BT). Since synbiotics can cease gut-related bacterial overgrowth, they may serve as a supportive dietary supplement-based strategy after gastrointestinal surgery. This study was conducted to determine the effects of Lactobacillus acidophilus and pectin on BT and gut adaptation after extensive small bowel resection in the rat. Forty rats were distributed in four groups. Group A suffered laparotomy, group B suffered gut transection and reanastomosis, SBS rats (group C) suffered 75% small gut resection, and finally, Group D suffered gut resection and treated with a synbiotic cocktail from day 7 before the surgery to day 14 after it. Intestinal structural changes and BT to mesenteric lymph nodes, liver, portal blood, and peripheral blood were detected on day 15 post-surgery. Treatment with a synbiotic cocktail led to a considerable reduction in bacterial translocation to liver and portal vein (degree II) compared with SBS untreated rats. Also, synbiotic administration significantly increased jejunum and ileum villus height and crypt depth, ileum villus width, and percentage of goblet cells in jejunum and ileum compared with SBS rats. In the rat model of short bowel syndrome, L. acidophilus, and pectin, as a potential synbiotic compound, could decrease the BT from the gut and improve the bowel adaptation., (© 2021. The Author(s), under exclusive licence to Springer Science+Business Media, LLC, part of Springer Nature.)

Soil water availability is an important field of study in soil water and plant relationship. Least limiting water range (LLWR) and integral water capacity (IWC) are two important concepts which are used for water availability to plant. LLWR is determined from four moisture coefficients ( θ AFP , θ FC , θ SR , θ PWP ) that are the soil water contents 10% air-filled porosity (AFP), at field water capacity (FC), 2 MPa penetration resistance (SR), and permanent wilting point (PWP), respectively. The computation is dependent on critical values, so IWC was introduced to avoid using the critical limits that sharply rises in a cut-off from 0 to 1 at the wet end of water release curve or sharply falls from 1 to 0 at the dry side in the previous concepts of water availability for plant. IWC is the integral of differential water capacity function ( C(h) ) in the amplitude of 0 to infinity soil matric potential ( h ) multiplied by some weighting functions ( ω i (h) ) each considering the effect of various soil limitations on water availability to plants. Up to now, the effect of different soil attributes and the tillage treatments have been reviewed on LLWR. The effect of soil various physical and chemical limitations such as soil hydraulic conductivity ( K(h) ), aeration, SR, and salinity has been considered on IWC computation. LLWR and especially IWC have been seldom studied using plant real response. Results of few studies about LLWR and IWC using stomatal conductance and canopy temperature showed that their values were considerably different with those computed based on previously introduced critical limits for LLWR and weighting functions for IWC. These differences indicate that the critical limits proposed by da Silva et al. (Soil Sci Soc Am J 58:1775-1781, 1994) and weighting functions by Groenevelt et al. (Aust J Soil Res 39:577-598, 2001) may not be applied indiscriminately for all plants and should to be modified according to plant response. Physiological characteristics like transpiration and photosynthesis rate, chlorophyll index, leaf water potential, and relative water content also could be appropriate indices for monitoring plant water status and computation the real value of LLWR and IWC in the field or greenhouse for various types of plants., Competing Interests: Conflict of interestThe authors declare that they have no conflict of interest., (© King Abdulaziz City for Science and Technology 2020.)

Designation of representative watersheds (RWs) as a reference area representing key behavior of the whole region is an essential tool to provide a time and cost-effective basis for monitoring watershed performance against different driving forces. It is more important in developing countries facing lack of necessary investments in one hand and ever-increasing human interventions and need to assess the outcome behavior of the system in another hand. However, this serious affair has been less considered worldwide, in general, and in developing countries, in particular. Therefore, in the present study, a quantitative-based method of Representative Watershed Index (RWI) with potential range from 0 to 100 has been formulated using four important criteria and available national-wide raster data of elevation (meter), slope (%), rainfall erosivity factor (t m ha -1  cm h -1 ), and land use. The approach was then applied to the data prepared for the unique and invaluable global water ecosystem of the Urmia Lake Basin (ULB), north-western Iran, as a case study. The input raster was overlaid via matrices programming in the MATrix LABoratory (MATLAB) 2016 and Geographic Information System (GIS) 9.3 software environments. The RWIs were accordingly computed for 61 sub-watersheds of the ULB. The RWIs resulted from quadri-partite dimensional matrices that varied from 5.54 to 53.46 with respective maximum dissimilarity and resemblance with the entire 61 study sub-watersheds in the region. However, the sub-watershed with RWI of 40.65 (No. 57) was proposed as the final RW for the whole ULB due to hydrological independency, appropriate locality, and existence of functioning meteorological and hydrometric stations. The identified RW would be suggested to be considered as the basis for future insight monitoring and assessing environmental issues for the region eventually leading to an appropriate adaptive watershed management. Graphical abstract ᅟ.

Zika virus (ZIKV) is an emerging pathogen of huge public health significance to human beings. Although majority of infections are benign with self-limiting symptoms, the recent outbreak has established an association with the increased incidence of some congenital anomalies such as microcephaly. In other words, due to the large extent of the virus and mosquito vectors, the infection has become a thoughtful health problem for human societies, though now, there are no antiviral therapies or vaccines against this virus. In spite of extensive research carried out by scientists, not so much information has been gathered about this viral infection. In the current review, we prepared an overview of the remarkable progress made in understanding about the epidemiology, immunology, clinical presentation, and diagnosis methods of ZIKV infection.

Yos9 is an essential component of the endoplasmic reticulum associated protein degradation (ERAD) system that is responsible for removing terminally misfolded proteins from the ER lumen and mediating proteasomal degradation in the cytosol. Glycoproteins that fail to attain their native conformation in the ER expose a distinct oligosaccharide structure, a terminal α1,6-linked mannose residue, that is specifically recognized by the mannose 6-phoshate receptor homology (MRH) domain of Yos9. We have determined the structure of the MRH domain of Yos9 in its free form and complexed with 3α, 6α-mannopentaose. We show that binding is achieved by loops between β-strands performing an inward movement and that this movement also affects the entire β-barrel leading to a twist. These rearrangements may facilitate the processing of client proteins by downstream acting factors. In contrast, other oligosaccharides such as 2α-mannobiose bind weakly with only locally occurring chemical shift changes underscoring the specificity of this substrate selection process within ERAD.

A novel ion-imprinted polymer (IIP) toward Pb(II) recognition was synthesized on the surface of magnetic multi-walled carbon nanotubes (magnetic MWCNTs). In order to prepare magnetic functionalized-MWCNT/IIP (magnetic f-MWCNT/IIP), copolymerization of methylenebisacrylamide (MBAm) and acrylamide (AM) in the presence of dithizone-Pb(II) complex was carried out on the surface of the magnetic f-MWCNTs. Selectivity of the new synthesized sorbent toward Pb(II) and the influence of a variety of foreign ions on the recognition, preconcentration, and removal of Pb(II) were evaluated using adsorption experiments in aqueous solution. The synthesized sorbent exhibited a good affinity with high adsorption capacity (Q = 80.81 mg/g) and an excellent selectivity toward Pb(II) in comparison with other common cations including alkaline, alkaline earth, and transition metals such as Na + , K + , Mg 2+ , Ca 2+ , Cd 2+ , and Ni 2+ . The parameters such as adsorption and desorption time, adsorption capacity, effect of the sorbent mass, eluent type, concentration and volume, and also pH of the solutions were investigated. The result demonstrated that the proposed sorbent provided a fast removal and higher maximum binding capacity compared to other reported synthesized sorbents. The characteristics of the magnetic f-MWCNT/IIP were analyzed using Fourier transform infrared spectroscopy (FT-IR), scanning electron microscopy (SEM), X-ray diffraction (XRD), energy-dispersive spectroscopy (EDS), vibrating sample magnetometer (VSM), and elemental analysis (EA). Graphical abstract ᅟ.

Multiple sclerosis (MS) causes demyelination of white matter of central nervous system and neuro-degeneration due to inflammation. Different types of MS, as well as disease progression, come with different pathology and pathophysiology. The objective of this study was to evaluate the possible association between different micro-organisms and the relapse or progression of MS. Studies indexed in Medline/PMC, Scopus and Web of Science published without time and language limitation until March 2017 were identified through the search terms "infection" or "infectious" and "multiple sclerosis". A total of 20878 abstracts were identified through the initial search terms. Selection of articles and assessment of their quality was done based on Cochrane library guidelines. Full texts were reviewed for 33 articles out of which 14 articles met the criteria for inclusion. Different micro-organisms are known to play roles in the pathogenesis of MS and its relapse; including Human herpesvirus 6 (HHV-6), Human herpesvirus 7 (HHV-7), Epstein-Barr virus (EBV), Chlamydia pneumoniae and Torque teno virus (TTV). But in this review only HHV-6, C. pneumoniae and TTV have been considered to play a role in disease progression in some studies and not all of them. This review concluded that some micro-organisms such as HHV-6, C. pneumoniae and TTV have been considered as cofactors to make MS a progressive type. It should be considered that these findings do not necessarily rule out the role of other pathogens in MS progression but may represent population differences or different sensitivity of the technique used.

Staphylococcus aureus is a major causative pathogen of clinical and subclinical mastitis of dairy domestic ruminants. This organism produces a variety of extracellular toxins and virulence factors such as enterotoxin SEI and SEJ that contribute to its pathogenic potential. In this study 25 S. aureus isolates obtained from four dairy herds of Urmia region which is located in West Azerbaijan province in Iran. The tested isolates were identified on the basis of the cultural and biochemical properties, as well as amplification of the aroA gene which is specific for S. aureus . All isolates were also analyzed for the presence of the SEI ( sei ) and SEJ ( sej ) encoding genes using polymerase chain reaction (PCR). Seven positive isolates were detected for sei , but sej gene was not detected in any of the total number of 25 isolates. The present study revealed that the PCR amplification of the aroA gene could be used as a powerful tool for identification of S. aureus from the cases of bovine mastitis. Results of the present study also showed that the strains of S. aureus which cause mastitis can potentially produce enterotoxin SEI. Overall, our results suggest that it is of special importance to follow the presence of enterotoxin-producing S. aureus in other dairy products, especially for protecting the consumers from staphylococcal food poisoning.