6 results on '"E. De Bruin"'
Search Results
2. Genotyping of European Toxoplasma gondii strains by a new high-resolution next-generation sequencing-based method.
- Author
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Joeres M, Maksimov P, Höper D, Calvelage S, Calero-Bernal R, Fernández-Escobar M, Koudela B, Blaga R, Vrhovec MG, Stollberg K, Bier N, Sotiraki S, Sroka J, Piotrowska W, Kodym P, Basso W, Conraths FJ, Mercier A, Galal L, Dardé ML, Balea A, Spano F, Schulze C, Peters M, Scuda N, Lundén A, Davidson RK, Terland R, Waap H, de Bruin E, Vatta P, Caccio S, Ortega-Mora LM, Jokelainen P, and Schares G
- Subjects
- Pregnancy, Female, Humans, Genotype, Multiplex Polymerase Chain Reaction, High-Throughput Nucleotide Sequencing, DNA, Protozoan genetics, Genetic Variation, Polymorphism, Restriction Fragment Length, Toxoplasma genetics
- Abstract
Purpose: A new high-resolution next-generation sequencing (NGS)-based method was established to type closely related European type II Toxoplasma gondii strains., Methods: T. gondii field isolates were collected from different parts of Europe and assessed by whole genome sequencing (WGS). In comparison to ME49 (a type II reference strain), highly polymorphic regions (HPRs) were identified, showing a considerable number of single nucleotide polymorphisms (SNPs). After confirmation by Sanger sequencing, 18 HPRs were used to design a primer panel for multiplex PCR to establish a multilocus Ion AmpliSeq typing method. Toxoplasma gondii isolates and T. gondii present in clinical samples were typed with the new method. The sensitivity of the method was tested with serially diluted reference DNA samples., Results: Among type II specimens, the method could differentiate the same number of haplotypes as the reference standard, microsatellite (MS) typing. Passages of the same isolates and specimens originating from abortion outbreaks were identified as identical. In addition, seven different genotypes, two atypical and two recombinant specimens were clearly distinguished from each other by the method. Furthermore, almost all SNPs detected by the Ion AmpliSeq method corresponded to those expected based on WGS. By testing serially diluted DNA samples, the method exhibited a similar analytical sensitivity as MS typing., Conclusion: The new method can distinguish different T. gondii genotypes and detect intra-genotype variability among European type II T. gondii strains. Furthermore, with WGS data additional target regions can be added to the method to potentially increase typing resolution., (© 2023. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
3. Unilateral lower limb strength assessed using the Nintendo Wii Balance Board: a simple and reliable method.
- Author
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Blomkvist AW, Andersen S, de Bruin E, and Jorgensen MG
- Subjects
- Accidental Falls prevention & control, Aged, Female, Humans, Independent Living, Male, Reproducibility of Results, Risk Factors, Aging physiology, Lower Extremity physiology, Muscle Strength physiology, Postural Balance physiology, Video Games
- Abstract
Background: Lower limb weakness is an important risk factor for fall accidents and a predictor for all-cause mortality among older adults. Unilateral whole-lower limb strength may be a better measure of fall risk than the bilateral measure. In addition, a number of clinical conditions affect only one leg, and thus this type of assessment is relevant in clinical settings., Aim: To explore the intra-rater reproducibility of the Nintendo Wii Balance Board (WBB) to measure unilateral whole-lower limb strength and to compare the method with stationary isometric muscle apparatus (SID)., Method: Intra-rater test-retest design with 1 week between sessions. Thirty community-dwelling older adults (69 ± 4.2 years) were enrolled and examined for maximum lower limb strength in their dominant and non-dominant leg. Intraclass correlation coefficient (ICC) was calculated to describe relative reproducibility, while standard error of measurement (SEM), limits of agreement (LOA) and smallest real difference (SRD) were calculated to describe absolute reproducibility between test sessions. Concurrent validity with the SID was explored using the Pearson product-moment correlation coefficient (PCC)., Results: No systematic difference was observed between test sessions. ICC was 0.919-0.950 and SEM, LOA and SRD was 2.9-4.1 kg, 24.1-28.3 kg and 7.6-11.3 kg, respectively. Further, the PCC was 0.755 and 0.730 for the dominant limb and the non-dominant limb, respectively., Conclusion: A high relative and an acceptable absolute reproducibility was seen when using the Nintendo Wii Balance Board for testing unilateral lower limb strength in community-dwelling older adults. The WBB correlated strongly with the SID.
- Published
- 2017
- Full Text
- View/download PDF
4. Epidemiological Risk Factors for Animal Influenza A Viruses Overcoming Species Barriers.
- Author
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Harris KA, Freidl GS, Munoz OS, von Dobschuetz S, De Nardi M, Wieland B, Koopmans MPG, Stärk KDC, van Reeth K, Dauphin G, Meijer A, de Bruin E, Capua I, Hill AA, Kosmider R, Banks J, Stevens K, van der Werf S, Enouf V, van der Meulen K, Brown IH, Alexander DJ, and Breed AC
- Subjects
- Animals, Birds, Humans, Orthomyxoviridae, Risk Factors, Influenza A virus pathogenicity, Influenza in Birds transmission, Influenza, Human transmission
- Abstract
Drivers and risk factors for Influenza A virus transmission across species barriers are poorly understood, despite the ever present threat to human and animal health potentially on a pandemic scale. Here we review the published evidence for epidemiological risk factors associated with influenza viruses transmitting between animal species and from animals to humans. A total of 39 papers were found with evidence of epidemiological risk factors for influenza virus transmission from animals to humans; 18 of which had some statistical measure associated with the transmission of a virus. Circumstantial or observational evidence of risk factors for transmission between animal species was found in 21 papers, including proximity to infected animals, ingestion of infected material and potential association with a species known to carry influenza virus. Only three publications were found which presented a statistical measure of an epidemiological risk factor for the transmission of influenza between animal species. This review has identified a significant gap in knowledge regarding epidemiological risk factors for the transmission of influenza viruses between animal species.
- Published
- 2017
- Full Text
- View/download PDF
5. Formal Thought Disorder and Executive Functioning in Children and Adolescents with Autism Spectrum Disorder: Old Leads and New Avenues.
- Author
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Ziermans T, Swaab H, Stockmann A, de Bruin E, and van Rijn S
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- Adolescent, Autism Spectrum Disorder epidemiology, Child, Cross-Sectional Studies, Female, Humans, Male, Memory, Short-Term physiology, Netherlands epidemiology, Neuropsychological Tests, Photic Stimulation methods, Psychomotor Performance physiology, Psychotic Disorders epidemiology, Young Adult, Autism Spectrum Disorder diagnosis, Autism Spectrum Disorder psychology, Executive Function physiology, Psychotic Disorders diagnosis, Psychotic Disorders psychology, Thinking physiology
- Abstract
Formal thought disorder (FTD) is a disruption in the flow of thought and a common feature in psychotic disorders and autism spectrum disorder (ASD). Executive dysfunction has often been associated with FTD, yet for ASD convincing evidence is lacking. This study investigated FTD and three core executive functions in 50 young children and adolescents with high-functioning ASD and 56 matched controls. Higher overall levels of FTD marked ASD compared to controls. Furthermore, in ASD decreased performance on verbal working memory was correlated with increased FTD ratings and explained a significant amount of variance of objective and subjective FTD. Verbal working memory is currently the most promising target executive function for understanding the development of idiosyncratic thought disorders in ASD.
- Published
- 2017
- Full Text
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6. Face and emotion recognition in MCDD versus PDD-NOS.
- Author
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Herba CM, de Bruin E, Althaus M, Verheij F, and Ferdinand RF
- Subjects
- Abnormalities, Multiple epidemiology, Child, Female, Humans, Male, Wechsler Scales, Affect, Child Development Disorders, Pervasive epidemiology, Developmental Disabilities epidemiology, Face, Facial Expression, Recognition, Psychology
- Abstract
Previous studies indicate that Multiple Complex Developmental Disorder (MCDD) children differ from PDD-NOS and autistic children on a symptom level and on psychophysiological functioning. Children with MCDD (n = 21) and PDD-NOS (n = 62) were compared on two facets of social-cognitive functioning: identification of neutral faces and facial expressions. Few significant group differences emerged. Children with PDD-NOS demonstrated a more attention-demanding strategy of face processing, and processed neutral faces more similarly to complex patterns whereas children with MCDD showed an advantage for face recognition compared to complex patterns. Results further suggested that any disadvantage in face recognition was related more to the autistic features of the PDD-NOS group rather than characteristics specific to MCDD. No significant group differences emerged for identifying facial expressions.
- Published
- 2008
- Full Text
- View/download PDF
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