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Phytoplankton species are dominant components in reservoir ecosystems, yet little is known about their variability and dynamics, especially along the depth continuum. This study examined vertical and horizontal differences in phytoplankton communities in a typical subtropical deep reservoir (i.e. Dongzhen Reservoir) from 2011 to 2012. Phytoplankton communities separated into four groups based on the biomass data, indicating that temporal differences in the community structure were greater than spatial differences. Autumn communities had the highest diversity measured by the Shannon-Wiener index (2.47±0.07), while summer communities had the lowest diversity (0.46±0.09). Both winter and spring communities were dominated by diatoms (90.4±1.7%), while cyanobacteria dominated in summer communities during our sampling period. In spring and summer, however, the three surface communities characterized by high biomass were most similar to each other, indicating that vertical variation was significantly higher than horizontal differences. Furthermore, Cylindrospermopsis raciborskii accounted for over 96% of the total phytoplankton biomass in the summer surface water. The redundancy analysis (RDA) illustrated that the temporal factor (summer), the spatial factor (depth), and nutrients (nitrite and nitrate nitrogen, ammonium nitrogen, phosphate phosphorus) were significant variables affecting the dynamics of phytoplankton communities. High temperature with stable thermal stratification might have been the cause of C. raciborskii dominance in Dongzhen Reservoir in summer. Regular and long-term monitoring of dominant species is urgently needed for water quality protection and sustainable reservoir management. Copyright© of Dept. of Oceanography and Geography, University of Gdańsk, Poland [ABSTRACT FROM AUTHOR]