39 results on '"Besenbacher, F."'
Search Results
2. Monitoring patterned enzymatic polymerization on DNA origami at single-molecule level.
- Author
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Okholm, A. H., Aslan, H., Besenbacher, F., Dong, M., and Kjems, J.
- Published
- 2015
- Full Text
- View/download PDF
3. Mechanical properties of amyloid-like fibrils defined by secondary structures.
- Author
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Bortolini, C., Jones, N. C., Hoffmann, S. V., Wang, C., Besenbacher, F., and Dong, M.
- Published
- 2015
- Full Text
- View/download PDF
4. A novel intermediate in the LiAlH4-LiNH2 hydrogen storage system.
- Author
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Jepsen, L. H., Ravnsbæk, D. B., Grundlach, C., Besenbacher, F., Skibsted, J., and Jensen, T. R.
- Subjects
SYNCHROTRON radiation ,INTERMEDIATES (Chemistry) ,X-ray diffraction ,DIFFERENTIAL scanning calorimetry ,MASS spectrometry ,HYDROGEN - Abstract
The decomposition pathways for the composite LiAlH
4 -LiNH2 in different ratios of (1 : 1), (1 : 1.5), (1 : 2) and (1 : 2.5) have been systematically studied using in situ synchrotron radiation powder X-ray diffraction (SR-PXD) as well as simultaneous thermogravimetric analysis and differential scanning calorimetry coupled with mass spectroscopy. The study reveals that LiAlH4 decomposes in two steps to LiH, Al and H2 and, subsequently, the produced LiH reacts with LiNH2 forming Li2 NH and H2 . A new intermediate, Li4-x Alx(NH)2-2x N2x , is observed during the decomposition of LiAlH4 -LiNH2 (1 : 1.5), (1 : 2) and (1 : 2.5), formed from Li2 NH and Al prior to the formation of Li3 AlN2 . Li4-x Alx (NH)2-2x N2x is characterized by Rietveld refinement of SR-PXD data and solid-state 27Al MAS NMR spectroscopy (chemical shift, δ(Al) = 125 ppm) and both techniques reveal a maximum value for x of ∼0.10, i.e., Li3.90 Al0.10 (NH)1.80 N0.20 . The solid solution Li4-x Alx (NH)2-2x N2x crystallizes in a cubic unit cell, a = 4.9854(7) Å with space group Fm3m, similar to the crystal structure for Li2 NH and is a rare type with both cation and anion disorder. For LiAlH4 -LiNH2 (1 : 1) 8.7 wt% of H2 is released during heating from RT to 500 °C, while for LiAlH4 -LiNH2 composites with molar ratios of LiNH2 higher than 0.5 the release of both H2 and NH3 is observed. [ABSTRACT FROM AUTHOR]- Published
- 2014
- Full Text
- View/download PDF
5. Hydrogen–fluorine exchange in NaBH4–NaBF4.
- Author
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Rude, L. H., Filsø, U., D'Anna, V., Spyratou, A., Richter, B., Hino, S., Zavorotynska, O., Baricco, M., Sørby, M. H., Hauback, B. C., Hagemann, H., Besenbacher, F., Skibsted, J., and Jensen, T. R.
- Abstract
Hydrogen–fluorine exchange in the NaBH
4 –NaBF4 system is investigated using a range of experimental methods combined with DFT calculations and a possible mechanism for the reactions is proposed. Fluorine substitution is observed using in situ synchrotron radiation powder X-ray diffraction (SR-PXD) as a new Rock salt type compound with idealized composition NaBF2 H2 in the temperature range T = 200 to 215 °C. Combined use of solid-state19 F MAS NMR, FT-IR and DFT calculations supports the formation of a BF2 H2 − complex ion, reproducing the observation of a19 F chemical shift at −144.2 ppm, which is different from that of NaBF4 at −159.2 ppm, along with the new absorption bands observed in the IR spectra. After further heating, the fluorine substituted compound becomes X-ray amorphous and decomposes to NaF at ∼310 °C. This work shows that fluorine-substituted borohydrides tend to decompose to more stable compounds, e.g. NaF and BF3 or amorphous products such as closo-boranes, e.g. Na2 B12 H12 . The NaBH4 –NaBF4 composite decomposes at lower temperatures (300 °C) compared to NaBH4 (476 °C), as observed by thermogravimetric analysis. NaBH4 –NaBF4 (1 : 0.5) preserves 30% of the hydrogen storage capacity after three hydrogen release and uptake cycles compared to 8% for NaBH4 as measured using Sievert’s method under identical conditions, but more than 50% using prolonged hydrogen absorption time. The reversible hydrogen storage capacity tends to decrease possibly due to the formation of NaF and Na2 B12 H12 . On the other hand, the additive sodium fluoride appears to facilitate hydrogen uptake, prevent foaming, phase segregation and loss of material from the sample container for samples of NaBH4 –NaF. [ABSTRACT FROM AUTHOR]- Published
- 2013
- Full Text
- View/download PDF
6. Bicomponent hydrogen-bonded nanostructures formed by two complementary molecular Landers on Au(111).
- Author
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Kalashnyk, N., Yu, M., Lægsgaard, E., Besenbacher, F., Linderoth, T. R., Barattin, R., Joachim, C., Gourdon, A., Bouju, X., Hliwa, M., and Benjalal, Y.
- Subjects
HYDROGEN bonding ,ADSORPTION kinetics ,QUANTUM mechanics/molecular mechanics ,MOLECULAR shapes ,GOLD nanoparticles ,VAN der Waals forces ,SCANNING tunneling microscopy - Abstract
The co-adsorption of two molecular Landers equipped with functional groups capable of forming a complementary triple hydrogenbonding motif is investigated with scanning tunneling microscopy and molecular mechanics calculations. Surprisingly, the anticipated complementary motif is not realised in 2-D terrace structures, but is observed in 1-D structures at step edges where molecular conformational flexibility is confined. [ABSTRACT FROM AUTHOR]
- Published
- 2014
- Full Text
- View/download PDF
7. Three-dimensional hydrogen bonding between Landers and planar molecules facilitated by electrostatic interactions with Ni adatoms.
- Author
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Yu M, Benjalal Y, Chen C, Kalashnyk N, Xu W, Barattin R, Nagarajan S, Lægsgaard E, Stensgaard I, Hliwa M, Gourdon A, Besenbacher F, Bouju X, and Linderoth TR
- Abstract
Using a combination of UHV-STM and molecular mechanics calculations, we investigate the surface self-assembly of a complex multi-component metal-molecule system with synergistic non-covalent interactions. Hydrogen bonding between three-dimensional Lander-DAT molecules and planar PTCDI molecules, adsorbed closer to the surface, is found to be facilitated by electrostatic interactions between co-adsorbed Ni adatoms and the flexible molecular DAT groups.
- Published
- 2018
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8. Thermal decomposition of sodium amide, NaNH 2 , and sodium amide hydroxide composites, NaNH 2 -NaOH.
- Author
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Jepsen LH, Wang P, Wu G, Xiong Z, Besenbacher F, Chen P, and Jensen TR
- Abstract
Sodium amide, NaNH
2 , has recently been shown to be a useful catalyst to decompose NH3 into H2 and N2 , however, sodium hydroxide is omnipresent and commercially available NaNH2 usually contains impurities of NaOH (<2%). The thermal decomposition of NaNH2 and NaNH2 -NaOH composites is systematically investigated and discussed. NaNH2 is partially dissolved in NaOH at T > 100 °C, forming a non-stoichiometric solid solution of Na(OH)1-x (NH2 )x (0 < x < ∼0.30), which crystallizes in an orthorhombic unit cell with the space group P21 21 21 determined by synchrotron powder X-ray diffraction. The composite xNaNH2 -(1 - x)NaOH (∼0.70 < x < 0.72) shows a lowered melting point, ∼160 °C, compared to 200 and 318 °C for neat NaNH2 and NaOH, respectively. We report that 0.36 mol of NH3 per mol of NaNH2 is released below 400 °C during heating in an argon atmosphere, initiated at its melting point, T = 200 °C, possibly due to the formation of the mixed sodium amide imide solid solution. Furthermore, NaOH reacts with NaNH2 at elevated temperatures and provides the release of additional NH3 .- Published
- 2016
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9. Self-assembly of hydrogen-bonded supramolecular complexes of nucleic-acid-base and fatty-acid at the liquid-solid interface.
- Author
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Zhao H, Song X, Aslan H, Liu B, Wang J, Wang L, Besenbacher F, and Dong M
- Subjects
- Hydrogen Bonding, Microscopy, Scanning Tunneling, Molecular Conformation, Thermodynamics, Guanine chemistry, Stearic Acids chemistry
- Abstract
Self-assembly provides an effective approach for the fabrication of supramolecular complexes or heterojunction materials, which have unique properties and potential applications in many fields. In this study, the self-assembled structures of stearic acid (SA) and nucleic acid base, guanine (G), are formed at the liquid-solid interface. Two main configurations, namely SA-G-SA and SA-G-G-SA, are observed and the intermolecular recognition mechanism between G and SA is proposed from the hydrogen-bonding point of view.
- Published
- 2016
- Full Text
- View/download PDF
10. Synthesis and decomposition of Li3Na(NH2)4 and investigations of Li-Na-N-H based systems for hydrogen storage.
- Author
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Jepsen LH, Wang P, Wu G, Xiong Z, Besenbacher F, Chen P, and Jensen TR
- Abstract
Previous studies have shown modified thermodynamics of amide-hydride composites by cation substitution, while this work systematically investigates lithium-sodium-amide, Li-Na-N-H, based systems. Li3Na(NH2)4 has been synthesized by combined ball milling and annealing of 3LiNH2-NaNH2 with LiNa2(NH2)3 as a minor by-product. Li3+xNa1-x(NH2)4 releases NaNH2 and forms non-stoichiometric Li3+xNa1-x(NH2)4 before it melts at 234 °C, as observed by in situ powder X-ray diffraction. Above 234 °C, Li3+xNa1-x(NH2)4 releases a mixture of NH3, N2 and H2 while a bi-metallic lithium sodium imide is not observed during decomposition. Hydrogen storage performances have been investigated for the composites Li3Na(NH2)4-4LiH, LiNH2-NaH and NaNH2-LiH. Li3Na(NH2)4-4LiH converts into 4LiNH2-NaH-3LiH during mechanochemical treatment and releases 4.2 wt% of H2 in multiple steps between 25 and 340 °C as revealed by Sievert's measurements. All three investigated composites have a lower peak temperature for H2 release as compared to LiNH2-LiH, possibly owing to modified kinetics and thermodynamics, due to the formation of Li3Na(NH2)4 and LiNa2(NH2)3.
- Published
- 2016
- Full Text
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11. Poly(norepinephrine) as a functional bio-interface for neuronal differentiation on electrospun fibers.
- Author
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Taskin MB, Xu R, Zhao H, Wang X, Dong M, Besenbacher F, and Chen M
- Subjects
- Animals, Cell Adhesion, PC12 Cells, Rats, Cell Differentiation, Collagen chemistry, Neurites physiology, Neurons cytology, Norepinephrine chemistry, Tissue Scaffolds chemistry
- Abstract
Based on the catecholic chemistry of a mussel inspired coating, norepinephrine (NE), a catecholamine found both in neurotransmitters and mussel adhesive proteins, was for the first time applied as a unique bio-interface integrating multi-functions facilitating PC12 neuron-like differentiation. A uniform, ultra-smooth pNE coating was achieved on electrospun submicron PLCL fibers, proven by surface characterization. The introduced catechol groups from pNE were further used to not only anchor collagen to enhance cell adhesion but also localize nerve growth factor to promote neuron-like differentiation. The obtained pNE-collagen coating was found to be a superior substrate for PC12 differentiation, confirmed by both cellular toxicity/viability assays and immunochemical staining. The aligned PLCL fiber conformation further steered neurite formation along the fiber direction and contributed to neurite extension and increased the number of neurites per cell body. This facile pNE coating might lead to a more efficient use of growth factor, drugs and other bioactive molecules with lower loading dosage and sustained activity resulting in enhanced therapeutic effects and decreased adverse effects.
- Published
- 2015
- Full Text
- View/download PDF
12. Electrospun PCL/PEO coaxial fibers for basic fibroblast growth factor delivery.
- Author
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Rubert M, Dehli J, Li YF, Taskin MB, Xu R, Besenbacher F, and Chen M
- Abstract
The poor innate healing capacity of fibroblastic tissues, such as pelvic floor fascia, is attributed to the scarcity of fibroblasts to produce collagen, as the main collagen producing cells. Coaxial electrospun PCL/PEO fibers containing basic fibroblast growth factor (FGF-2) were evaluated for the local and temporal delivery of FGF-2 for promoting fibroblast proliferation. PCL/PEO coaxial fibers with a highly porous surface were successfully developed using coaxial electrospinning. The diameter of the PCL/PEO microfibers produced by coaxial electrospinning could be tuned by the electrospinning parameters. XPS surface chemistry probing and CA wettability analysis confirmed that the outer surface of the coaxial fibers is PCL. The protein was successfully encapsulated and a sustained release was observed over more than 9 days. In vitro, PCL/PEO coaxial fibers supported fibroblast cell adhesion. In addition, PCL/PEO coaxial fibers containing FGF-2 significantly enhanced fibroblast cell viability and proliferation. Further, Coll-I expression was significantly expressed after day 1 while down-regulated after day 9 compared to the control group. These results indicate that coaxial polymeric fibers allow local and sustained growth factor delivery with prolonged efficacy and longevity for connective tissue regeneration.
- Published
- 2014
- Full Text
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13. Optimised photocatalytic hydrogen production using core-shell AuPd promoters with controlled shell thickness.
- Author
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Jones W, Su R, Wells PP, Shen Y, Dimitratos N, Bowker M, Morgan D, Iversen BB, Chutia A, Besenbacher F, and Hutchings G
- Abstract
The development of efficient photocatalytic routines for producing hydrogen is of great importance as society moves away from energy sources derived from fossil fuels. Recent studies have identified that the addition of metal nanoparticles to TiO2 greatly enhances the photocatalytic performance of these materials towards the reforming of alcohols for hydrogen production. The core-shell structured Au-Pd bimetallic nanoparticle supported on TiO2 has being of interest as it exhibited extremely high quantum efficiencies for hydrogen production. However, the effect of shell composition and thickness on photocatalytic performance remains unclear. Here we report the synthesis of core-shell structured AuPd NPs with the controlled deposition of one and two monolayers (ML) equivalent of Pd onto Au NPs by colloidal and photodeposition methods. We have determined the shell composition and thickness of the nanoparticles by a combination of X-ray absorption fine structure and X-ray photoelectron spectroscopy. Photocatalytic ethanol reforming showed that the core-shell structured Au-Pd promoters supported on TiO2 exhibit enhanced activity compared to that of monometallic Au and Pd as promoters, whilst the core-shell Au-Pd promoters containing one ML equivalent Pd provide the optimum reactivity.
- Published
- 2014
- Full Text
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14. Well-controlled metal co-catalysts synthesised by chemical vapour impregnation for photocatalytic hydrogen production and water purification.
- Author
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Su R, Forde MM, He Q, Shen Y, Wang X, Dimitratos N, Wendt S, Huang Y, Iversen BB, Kiely CJ, Besenbacher F, and Hutchings GJ
- Abstract
As co-catalyst materials, metal nanoparticles (NPs) play crucial roles in heterogeneous photocatalysis. The photocatalytic performance strongly relies on the physical properties (i.e., composition, microstructure, and surface impurities) of the metal NPs. Here we report a convenient chemical vapour impregnation (CVI) approach for the deposition of monometallic-, alloyed, and core-shell structured metal co-catalysts onto the TiO2 photocatalyst. The as-synthesised metal NPs are highly dispersed on the support and show narrow size distributions, which suit photocatalysis applications. More importantly, the surfaces of the as-synthesised metal NPs are free of protecting ligands, enabling the photocatalysts to be ready to use without further treatment. The effect of the metal identity, the alloy chemical composition, and the microstructure on the photocatalytic performance has been investigated for hydrogen production and phenol decomposition. Whilst the photocatalytic H2 production performance can be greatly enhanced by using the core-shell structured co-catalyst (Pdshell-Aucore and Ptshell-Aucore), the Ptshell-Aucore modified TiO2 yields enhanced quantum efficiency but a reduced effective decomposition of phenol to CO2 compared to that of the monometallic counterparts. We consider the CVI approach provides a feasible and elegant process for the decoration of photocatalyst materials.
- Published
- 2014
- Full Text
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15. Selective photocatalytic oxidation of benzene for the synthesis of phenol using engineered Au-Pd alloy nanoparticles supported on titanium dioxide.
- Author
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Su R, Kesavan L, Jensen MM, Tiruvalam R, He Q, Dimitratos N, Wendt S, Glasius M, Kiely CJ, Hutchings GJ, and Besenbacher F
- Subjects
- Catalysis, Gold chemistry, Hydroxyl Radical chemistry, Oxidation-Reduction, Palladium chemistry, Phenol chemistry, Ultraviolet Rays, Alloys chemistry, Benzene chemistry, Metal Nanoparticles chemistry, Phenol chemical synthesis, Titanium chemistry
- Abstract
The selectivity of photocatalytic phenol production from the direct oxidation of benzene can be enhanced by fine adjustment of the morphology and composition of Au-Pd metal nanoparticles supported on titanium dioxide thereby suppressing the decomposition of benzene and evolution of phenolic compounds.
- Published
- 2014
- Full Text
- View/download PDF
16. Formation and sintering of Pt nanoparticles on vicinal rutile TiO₂ surfaces.
- Author
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Rieboldt F, Helveg S, Bechstein R, Lammich L, Besenbacher F, Lauritsen JV, and Wendt S
- Abstract
By means of scanning tunnelling microscopy (STM) the nucleation, growth and sintering of platinum nanoparticles (Pt NP's) was studied on vicinal and flat rutile titanium dioxide (TiO2) surfaces. Utilising physical vapour deposition, the nucleation of Pt NP's on TiO2 surfaces at room temperature (RT) was found to be random and invariant towards different surface morphologies and reduction states. Thus, the nucleation of Pt on TiO2 at RT is rather insensitive to the surface structure and surface defects. Vacuum-annealing at 600 K, 700 K and 800 K, respectively, led to lower densities of Pt NP's as a result of sintering. Sintering occurred at different rates at the TiO2 surfaces studied, indicating that the surface morphology and the amount of Ti(3+) excess charge do have an influence on the particle stability. Observed changes in the NP distribution as a result of sintering can be explained inferring facile diffusion of Pt NP's along the [001] direction.
- Published
- 2014
- Full Text
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17. The position of hydrophobic residues tunes peptide self-assembly.
- Author
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Bortolini C, Liu L, Gronewold TM, Wang C, Besenbacher F, and Dong M
- Subjects
- Amino Acid Sequence, Circular Dichroism, Hydrogen-Ion Concentration, Microscopy, Atomic Force, Microscopy, Electron, Transmission, Models, Molecular, Molecular Sequence Data, Amino Acids chemistry, Hydrophobic and Hydrophilic Interactions, Peptides chemistry, Protein Structure, Secondary
- Abstract
The final structure and properties of synthetic peptides mainly depend on their sequence composition and experimental conditions. This work demonstrates that a variation in the positions of hydrophobic residues within a peptide sequence can tune the self-assembly. Techniques employed are atomic force microscopy, transmission electron microscopy and an innovative method based on surface acoustic waves. In addition, a systematic investigation on pH dependence was carried out by utilizing constant experimental parameters.
- Published
- 2014
- Full Text
- View/download PDF
18. Transformation of β-sheet structures of the amyloid peptide induced by molecular modulators.
- Author
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Niu L, Liu L, Xu M, Cramer J, Gothelf KV, Dong M, Besenbacher F, Zeng Q, Yang Y, and Wang C
- Subjects
- Microscopy, Scanning Tunneling, Protein Structure, Secondary, Pyridines chemistry, Spectroscopy, Fourier Transform Infrared, Amyloid beta-Peptides chemistry, Peptide Fragments chemistry
- Abstract
In this work we report the effect of terminus molecular modulators on the secondary structures of the amyloid peptide aggregates. The controlled modulation of the assembly structure and the transformation of β-sheet secondary structures could be beneficial for gaining insight into the aggregation mechanism of peptides. Particularly, multiple assembling characteristics have been identified as a reflection of peptide-organic interactions.
- Published
- 2014
- Full Text
- View/download PDF
19. Tailoring on-surface supramolecular architectures based on adenine directed self-assembly.
- Author
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Tan Q, Zhang C, Wang N, Zhu X, Sun Q, Jacobsen MF, Gothelf KV, Besenbacher F, Hu A, and Xu W
- Subjects
- Gold chemistry, Microscopy, Scanning Tunneling, Nanostructures chemistry, Surface Properties, Adenine chemistry
- Abstract
From an interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations we demonstrate that by delicately choosing the parent molecule (adenine) we are able to tune the self-assembled nanostructures of adenine derivatives which are directed by the specific intermolecular interactions provided by the adenine moiety.
- Published
- 2014
- Full Text
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20. Hydrogen-fluorine exchange in NaBH4-NaBF4.
- Author
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Rude LH, Filsø U, D'Anna V, Spyratou A, Richter B, Hino S, Zavorotynska O, Baricco M, Sørby MH, Hauback BC, Hagemann H, Besenbacher F, Skibsted J, and Jensen TR
- Abstract
Hydrogen-fluorine exchange in the NaBH4-NaBF4 system is investigated using a range of experimental methods combined with DFT calculations and a possible mechanism for the reactions is proposed. Fluorine substitution is observed using in situ synchrotron radiation powder X-ray diffraction (SR-PXD) as a new Rock salt type compound with idealized composition NaBF2H2 in the temperature range T = 200 to 215 °C. Combined use of solid-state (19)F MAS NMR, FT-IR and DFT calculations supports the formation of a BF2H2(-) complex ion, reproducing the observation of a (19)F chemical shift at -144.2 ppm, which is different from that of NaBF4 at -159.2 ppm, along with the new absorption bands observed in the IR spectra. After further heating, the fluorine substituted compound becomes X-ray amorphous and decomposes to NaF at ~310 °C. This work shows that fluorine-substituted borohydrides tend to decompose to more stable compounds, e.g. NaF and BF3 or amorphous products such as closo-boranes, e.g. Na2B12H12. The NaBH4-NaBF4 composite decomposes at lower temperatures (300 °C) compared to NaBH4 (476 °C), as observed by thermogravimetric analysis. NaBH4-NaBF4 (1:0.5) preserves 30% of the hydrogen storage capacity after three hydrogen release and uptake cycles compared to 8% for NaBH4 as measured using Sievert's method under identical conditions, but more than 50% using prolonged hydrogen absorption time. The reversible hydrogen storage capacity tends to decrease possibly due to the formation of NaF and Na2B12H12. On the other hand, the additive sodium fluoride appears to facilitate hydrogen uptake, prevent foaming, phase segregation and loss of material from the sample container for samples of NaBH4-NaF.
- Published
- 2013
- Full Text
- View/download PDF
21. Engineered three-dimensional nanofibrous multi-lamellar structure for annulus fibrosus repair.
- Author
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Kang R, Svend Le DQ, Li H, Lysdahl H, Chen M, Besenbacher F, and Bünger C
- Abstract
Repairing annulus fibrosus (AF) defects is one of the most challenging topics in intervertebral disc disease treatment research. The highly oriented native structure offers mechanical functionality to the spine, however manufacturing scaffolds with such a structure still presents a challenge for tissue engineering. Here, a three-dimensional (3D) multi-lamellar scaffold with hierarchically aligned nano- and micro-fibers for AF tissue engineering was successfully developed. Aligned polycaprolactone (PCL) nano-fiber sheets, which were fabricated by electrospinning, were inserted into fused-deposit-modeling (FDM) micro-fibers to build a layer-by-layer structure, with the thickness of each layer being 0.7 mm and the angle of fiber alignment in each adjacent layer being 60°. Human mesenchymal stem cells (hMSCs) were used for in vitro compatibility studies. The architecture of the scaffold was characterized by scanning electron microscopy (SEM). Uniaxial tensile testing showed closed mechanical properties of the scaffold to native AF tissue. The XTT cell viability and DNA quantification of the cells on the multi-lamellar scaffold were found to be significantly higher than the FDM scaffolds without nano-fibers. Confocal microscopy demonstrated that the cells spread evenly on the surface of the electrospun sheet and oriented along the nano-fiber direction. This 3D multi-lamellar scaffold has the advantages of stability from the FDM micro-fibers, and unique characteristics from the aligned electrospun nano-fibers, such as mimicking the extracellular matrix (ECM), and an ultrahigh surface area for improved hMSC attachment, proliferation and contact guidance of cell morphology. The newly designed scaffold mimics the native structure of AF and has a great potential as a substrate for the regeneration of AF.
- Published
- 2013
- Full Text
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22. Mussel inspired surface functionalization of electrospun nanofibers for bio-applications.
- Author
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Nielsen SR, Besenbacher F, and Chen M
- Subjects
- Animals, Immobilized Proteins chemistry, Molecular Structure, Surface Properties, Biomimetic Materials chemistry, Bivalvia, Indoles chemistry, Nanofibers chemistry, Polymers chemistry
- Abstract
Electrospinning technology has been widely recognized because of its ability to synthesize nanoscale fibers that are structurally similar to fibrillar structure of the natural extracellular matrix (ECM). Rendering the nanofiber surface to be biofunctional is critical for the successful application of the electrospinning technology in biomedical applications. Limitations in typical conjugation chemistry and physical adsorption procedures might be overcome by using polydopamine (pDA) coating inspired by adhesive proteins secreted by marine mussels. This perspective paper attempts to highlight an emerging area of the unique combination of electrospinning with pDA surface functionalization. The scientific progress and understandings of pDA coating chemistry mechanisms, coating processes and characterization with aids of nanoscale analytical techniques are reviewed and discussed. The intrinsic biomimetic morphological characteristics of the electrospun nanofibers united with the unique advantages of the pDA associated bio-functionalization have endowed a range of successful applications, especially in the interesting and important field of bioengineering.
- Published
- 2013
- Full Text
- View/download PDF
23. Adsorption and dehydrogenation of tetrahydroxybenzene on Cu(111).
- Author
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Bebensee F, Svane K, Bombis C, Masini F, Klyatskaya S, Besenbacher F, Ruben M, Hammer B, and Linderoth T
- Abstract
Adsorption of tetrahydroxybenzene (THB) on Cu(111) and Au(111) surfaces is studied using a combination of STM, XPS, and DFT. THB is deposited intact, but on Cu(111) it undergoes gradual dehydrogenation of the hydroxyl groups as a function of substrate temperature, yielding a pure dihydroxy-benzoquinone phase at 370 K. Subtle changes to the adsorption structure upon dehydrogenation are explained from differences in molecule-surface bonding.
- Published
- 2013
- Full Text
- View/download PDF
24. Morphology and atomic-scale structure of single-layer WS2 nanoclusters.
- Author
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Füchtbauer HG, Tuxen AK, Moses PG, Topsøe H, Besenbacher F, and Lauritsen JV
- Abstract
Two-dimensional sheets of transition metal (Mo and W) sulfides are attracting strong attention due to the unique electronic and optical properties associated with the material in its single-layer form. The single-layer MoS2 and WS2 are already in widespread commercial use in catalytic applications as both hydrotreating and hydrocracking catalysts. Consequently, characterization of the morphology and atomic structure of such particles is of utmost importance for the understanding of the catalytic active phase. However, in comparison with the related MoS2 system only little is known about the fundamental properties of single-layer WS2 (tungstenite). Here, we use an interplay of atom-resolved Scanning Tunneling Microscopy (STM) studies of Au(111)-supported WS2 nanoparticles and calculated edge structures using Density Functional Theory (DFT) to reveal the equilibrium morphology and prevalent edge structures of single-layer WS2. The STM results reveal that the single layer S-W-S sheets adopt a triangular equilibrium shape under the sulfiding conditions of the synthesis, with fully sulfided edges. The predominant edge structures are determined to be the (101[combining macron]0) W-edge, but for the smallest nanoclusters also the (1[combining macron]010) S-edges become important. DFT calculations are used to construct phase diagrams of the WS2 edges, and describe their sulfur and hydrogen coordination under different conditions, and in this way shed light on the catalytic role of WS2 edges.
- Published
- 2013
- Full Text
- View/download PDF
25. Adsorption of the organic salt TAB(HCl)4 on Cu(111) studied using STM and XPS.
- Author
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Masini F, Ning Y, Li Z, Lægsgaard E, Besenbacher F, and Linderoth TR
- Abstract
Sublimation of Tetra-Amino Benzene (TAB) in its tetrahydrochlorinated form onto Cu(111) leads to the formation of long range ordered structures consisting of TAB molecules with partially protonated amino groups interspersed with Cl species.
- Published
- 2013
- Full Text
- View/download PDF
26. Atomic-scale structures and interactions between the guanine quartet and potassium.
- Author
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Xu W, Tan Q, Yu M, Sun Q, Kong H, Lægsgaard E, Stensgaard I, Kjems J, Wang JG, Wang C, and Besenbacher F
- Subjects
- Hydrogen Bonding, Ligands, Metals chemistry, G-Quadruplexes, Potassium chemistry
- Abstract
The atomic-scale identification of the G4K1 structural motif is achieved using an interplay of STM imaging and DFT calculations. Its high stability is found to be caused by the delicate balance between hydrogen bonding and metal-ligand interaction, which is of utmost relevance to model interactions of the G-quadruplex with cations in vivo.
- Published
- 2013
- Full Text
- View/download PDF
27. A molecular conformational change induced self-assembly: from randomness to order.
- Author
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Xu W, Zhang C, Gersen H, Sun Q, Kong H, Dong L, Sheng K, Tan Q, Lægsgaard E, and Besenbacher F
- Abstract
From an interplay of high-resolution scanning tunneling microscopy (STM) imaging and density functional theory (DFT) calculations we reveal how a molecular conformational change induced self-assembly process can result in the conversion from a random molecular phase to the formation of two types of ordered surface nanostructures with different apparent heights.
- Published
- 2013
- Full Text
- View/download PDF
28. Transfer of a protein pattern from self-assembled DNA origami to a functionalized substrate.
- Author
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Busuttil K, Rotaru A, Dong M, Besenbacher F, and Gothelf KV
- Subjects
- Biotin chemistry, Biotin metabolism, Disulfides chemistry, Models, Molecular, Nucleic Acid Conformation, Streptavidin metabolism, Surface Properties, DNA chemistry, Printing methods, Streptavidin chemistry
- Abstract
Patterns of the protein streptavidin on DNA origami are printed onto a functionalized surface. The streptavidins are linked to DNA via a disulfide spacer and these conjugates self-organise into a predetermined pattern on DNA origami. The structure immobilises on a biotin-SAM-functionalized Au surface. By disulfide cleavage the origami is separated from the streptavidins, leaving the protein pattern at the surface.
- Published
- 2013
- Full Text
- View/download PDF
29. Methods to stabilize and destabilize ammonium borohydride.
- Author
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Nielsen TK, Karkamkar A, Bowden M, Besenbacher F, Jensen TR, and Autrey T
- Abstract
Ammonium borohydride, NH(4)BH(4), has a high hydrogen content of ρ(m) = 24.5 wt% H(2) and releases 18 wt% H(2) below T = 160 °C. However, the half-life of bulk NH(4)BH(4) at ambient temperatures and pressures, ~6 h, is insufficient for practical applications. The decomposition of NH(4)BH(4) (ABH(2)) was studied at variable hydrogen and argon back pressures to investigate possible pressure mediated stabilization effects. The hydrogen release rate from solid ABH(2) at ambient temperatures is reduced by ~16% upon increasing the hydrogen back pressure from 5 to 54 bar. Similar results were obtained using argon pressure and the observed stabilization may be explained by a positive volume of activation, ca. 73 ± 17 cc mol(-1), in the transition state leading to hydrogen release. Nanoconfinement in mesoporous silica, MCM-41, was investigated as alternative means to stabilize NH(4)BH(4). However, other factors appear to significantly destabilize NH(4)BH(4) and it rapidly decomposes at ambient temperatures into [(NH(3))(2)BH(2)][BH(4)] (DADB) in accordance with the bulk reaction scheme. The hydrogen desorption kinetics from nanoconfined [(NH(3))(2)BH(2)][BH(4)] is moderately enhanced as evidenced by a reduction in the DSC decomposition peak temperature of ΔT = -13 °C as compared to the bulk material. Finally, we note a surprising result, storage of DADB at temperature <-30 °C transformed, reversibly, the [(NH(3))(2)BH(2)][BH(4)] into a new low temperature polymorph as revealed by both XRD and solid state MAS (11)B MAS NMR.
- Published
- 2013
- Full Text
- View/download PDF
30. Steering supramolecular patterns by nucleobase-terminated molecules.
- Author
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Shen C, Cramer JR, Jacobsen MF, Liu L, Zhang S, Dong M, Gothelf KV, and Besenbacher F
- Subjects
- Adsorption, Graphite chemistry, Microscopy, Scanning Tunneling, Pyrimidine Dimers chemistry, Adenine chemistry, Thymine chemistry
- Abstract
Supramolecular patterns formed by adsorption from a liquid of nucleobase-terminated molecular rods on a graphite surface were investigated by scanning tunneling microscopy.
- Published
- 2013
- Full Text
- View/download PDF
31. Al2O3(1120) surface as a template for the ordered growth of Ni and Co nanoclusters.
- Author
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Venkataramani K, Jensen TN, Helveg S, Reichling M, Besenbacher F, and Lauritsen JV
- Abstract
The morphology and thermal stability of Ni and Co nanoclusters grown by physical vapour deposition on a reconstructed (1120) surface of α-Al(2)O(3) is investigated using non-contact atomic force microscopy (NC-AFM). NC-AFM images reveal that the clean α-Al(2)O(3)(1120) substrate adopts a characteristic (12 × 4) reconstruction when prepared in vacuum at high temperature. Subsequent deposition of Ni and Co onto this substrate at room temperature facilitates the growth of well-ordered metal nanocluster arrays with a preferred inter-cluster distance determined by the (12 × 4) periodicity of the substrate surface. The order in the cluster arrangement remains intact even upon annealing the system to temperatures up to 500 °C indicating a high resistance against sintering. The reconstructed α-Al(2)O(3)(1120) surface can, therefore, serve as an appropriate insulating template for studies of size-dependent magnetic or catalytic effects in a well-defined ensemble of metallic nanoclusters.
- Published
- 2012
- Full Text
- View/download PDF
32. Co-assembly of human islet amyloid polypeptide (hIAPP)/insulin.
- Author
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Liu P, Zhang S, Chen MS, Liu Q, Wang C, Wang C, Li YM, Besenbacher F, and Dong M
- Subjects
- Amyloid metabolism, Diabetes Mellitus, Type 2 pathology, Humans, Microscopy, Atomic Force, Amyloid ultrastructure, Diabetes Mellitus, Type 2 metabolism, Insulin metabolism, Islet Amyloid Polypeptide metabolism
- Abstract
The pathogenesis of type II diabetes can be linked to cosecreted hIAPP/insulin interacting with cell membranes. Here we investigate the nanostructures by co-assembling hIAPP and insulin on surfaces. By tuning the hIAPP/insulin ratio, atomic force microscopy reveals the resulting nanostructure morphology changes from fibrils to oligomers, to annular. Implications for in vivo studies are discussed., (This journal is © The Royal Society of Chemistry 2012)
- Published
- 2012
- Full Text
- View/download PDF
33. The role of self-assembling polypeptides in building nanomaterials.
- Author
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Liu L, Busuttil K, Zhang S, Yang Y, Wang C, Besenbacher F, and Dong M
- Subjects
- Particle Size, Peptides chemistry, Surface Properties, Nanostructures chemistry, Peptides chemical synthesis
- Abstract
Polypeptides are functional biomolecules that play a key role in life science, where they can act as hormones and signaling molecules. They can self-assemble into a variety of nanostructures, including two dimensional (2D) lamellae, one dimensional (1D) nanofibrils and nanotubes, and zero dimensional (0D) nanospheres. The driving force behind these advanced nanomaterials involves weak non-covalent interactions that include hydrogen bonding, and hydrophobic and electrostatic interactions. Here we discuss each of the interactions in relation to self-assembly and provide examples of some novel applications in engineering materials, tissue engineering and nanoelectronics. The overall aim is to provide a comprehensive, yet easily accessible review of the known nanomaterials produced by self-assembling polypeptides, which may lead to the construction of more advanced polypeptide nanostructures for future applications., (This journal is © the Owner Societies 2011)
- Published
- 2011
- Full Text
- View/download PDF
34. Building layer-by-layer 3D supramolecular nanostructures at the terephthalic acid/stearic acid interface.
- Author
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Li Y, Liu L, Subramani R, Pan Y, Liu B, Yang Y, Wang C, Mamdouh W, Besenbacher F, and Dong M
- Subjects
- Models, Molecular, Molecular Conformation, Nanotechnology, Nanostructures chemistry, Nanostructures ultrastructure, Phthalic Acids chemistry, Stearic Acids chemistry
- Abstract
By using the layer-by-layer deposition method, we build three dimensional (3D) supramolecular nanostructures by stacking small molecular species on top of the first buffer layer, which can be utilized to fabricate novel 3D supramolecular functional nanostructures.
- Published
- 2011
- Full Text
- View/download PDF
35. Unravelling the atomic structure of cross-linked (1 × 2) TiO2(110).
- Author
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Pieper HH, Venkataramani K, Torbrügge S, Bahr S, Lauritsen JV, Besenbacher F, Kühnle A, and Reichling M
- Abstract
The cross-linked (1 × 2) reconstruction of TiO(2)(110) is a frequently observed phase reflecting the surface structure of titania in a significantly reduced state. Here we resolve the atomic scale structure of the cross-linked (1 × 2) phase with dynamic scanning force microscopy operated in the non-contact mode (NC-AFM). From an analysis of the atomic-scale contrast patterns of the titanium and oxygen sub-structures obtained by imaging the surface with AFM tips having different tip apex termination, we infer the hitherto most accurate model of the atomic structure of the cross-linked (1 × 2) phase. Our findings suggest that the reconstruction is based on added rows in [001] direction built up of Ti(3)O(6) units with an uninterrupted central string of oxygen atoms accompanied by a regular sequence of cross-links consisting of linear triples of additional oxygen atoms in between the rows. The new insight obtained from NC-AFM solves previous controversy about the cross-linked TiO(2)(110) surface structure, since previously proposed models based on cross-links with a lower O content do not appear to be consistent with the atom-resolved data presented here. Instead, our measurements strongly support the Ti(3)O(6) motif to be the structural base of the cross-linked (1 × 2) reconstruction of TiO(2)(110).
- Published
- 2010
- Full Text
- View/download PDF
36. Long-range electron transfer in recombinant peroxidases anisotropically orientated on gold electrodes.
- Author
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Kartashov AV, Serafini G, Dong M, Shipovskov S, Gazaryan I, Besenbacher F, and Ferapontova EE
- Subjects
- Adsorption, Anisotropy, Biocatalysis, Catalytic Domain, Electrochemistry, Electrodes, Electron Transport, Heme metabolism, Horseradish Peroxidase genetics, Hydrogen Peroxide metabolism, Kinetics, Microscopy, Atomic Force, Models, Molecular, Protein Engineering, Recombinant Proteins genetics, Surface Properties, Gold chemistry, Horseradish Peroxidase chemistry, Horseradish Peroxidase metabolism, Recombinant Proteins chemistry, Recombinant Proteins metabolism
- Abstract
Long-range electron transfer (ET) in horseradish peroxidase (HRP) was studied with a wild-type recombinant form of HRP, rHRP, and recombinant forms containing histidine and cysteine tags at Gln1, Asn57, Asn189, or Ser309 amino acid residues of the protein. Chemisorption of the enzyme onto the Au electrodes through the tags introduced in different positions of the protein surface provided anisotropic orientations of the rHRPs on the Au surface, which allowed a restricted "rotation" of the rHRP molecules on the electrodes. Atomic force microscopy (AFM) studies revealed the monolayer coverage of the enzyme on gold surfaces and the specific orientations of different forms of rHRP, which may be characterized by different distances between the heme active site of rHRP and the gold electrode. The efficiency of long-range ET between the electrode and the heme of rHRP was estimated from direct non-catalytic electrochemistry of rHRPs differently orientated on Au and compared with the theoretically calculated values from the protein ET model (C. C. Page, C. C. Moser, X. Chen, P. L. Dutton, Nature, 1999, 402, 47-51), under the assumption that ET occurs within the protein structure between the heme and the tag-modified amino acid residue of the protein. Comparative analysis of the long-range ET through the rHRP showed that the highest ET rates, obtained for the rHRP forms containing the tags at C- or N-termini of the enzyme, did not correlate with the shortest ET distance, but were instead consistent with the directional ET along the most favourable ET pathway within the protein matrix.
- Published
- 2010
- Full Text
- View/download PDF
37. Self-assembly of hydrogen-bonded chains of molecular landers.
- Author
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Yu M, Kalashnyk N, Barattin R, Benjalal Y, Hliwa M, Bouju X, Gourdon A, Joachim C, Laegsgaard E, Besenbacher F, and Linderoth TR
- Abstract
One-dimensional chains of a specially designed lander molecule with di-carboxyl imide functional moieties, enabling complementary intermolecular hydrogen bonding, have been self-assembled under ultra high vacuum conditions on a Au(111) surface and characterized by scanning tunneling microscopy.
- Published
- 2010
- Full Text
- View/download PDF
38. Two-dimensional network stability of nucleobases and amino acids on graphite under ambient conditions: adenine, L-serine and L-tyrosine.
- Author
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Bald I, Weigelt S, Ma X, Xie P, Subramani R, Dong M, Wang C, Mamdouh W, Wang J, and Besenbacher F
- Subjects
- Calibration, Adenine chemistry, Amino Acids chemistry, DNA chemistry, Graphite chemistry, Serine chemistry, Tyrosine chemistry
- Abstract
We have investigated the stability of two-dimensional self-assembled molecular networks formed upon co-adsorption of the DNA base, adenine, with each of the amino acids, L-serine and L-tyrosine, on a highly oriented pyrolytic graphite (HOPG) surface by drop-casting from a water solution. L-serine and L-tyrosine were chosen as model systems due to their different interaction with the solvent molecules and the graphite substrate, which is reflected in a high and low solubility in water, respectively, compared with adenine. Combined scanning tunneling microscopy (STM) measurements and density functional theory (DFT) calculations show that the self-assembly process is mainly driven by the formation of strong adenine-adenine hydrogen bonds. We find that pure adenine networks are energetically more stable than networks built up of either pure L-serine, pure L-tyrosine or combinations of adenine with L-serine or L-tyrosine, and that only pure adenine networks are stable enough to be observable by STM under ambient conditions.
- Published
- 2010
- Full Text
- View/download PDF
39. Bridging the pressure gap in model systems for heterogeneous catalysis with high-pressure scanning tunneling microscopy.
- Author
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Vang RT, Laegsgaard E, and Besenbacher F
- Abstract
A high-pressure scanning tunneling microscope (HP-STM) enabling imaging with atomic resolution over the entire pressure range from ultrahigh vacuum (UHV) to one bar has been developed. By means of this HP-STM we have studied the adsorption of hydrogen on Cu(110), CO on Pt(110) and Pt(111), and NO on Pd(111) at high pressures. For all of these adsorption systems we find that the adsorption structures formed at high pressures are identical to high-coverage structures formed at lower pressures and temperatures. We thus conclude that for these systems the so-called pressure gap can be bridged, i.e. the results obtained under conventional surface science conditions can be extrapolated to higher pressures. Finally, we use the HP-STM to image the CO-induced phase separation of a Au/Ni(111) surface alloy in real time, whereby demonstrating the importance of catalyst stability in the study of bimetallic systems.
- Published
- 2007
- Full Text
- View/download PDF
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