1. The mitochondrial genome of the leaf-cutter ant Atta laevigata: a mitogenome with a large number of intergenic spacers
- Author
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Milene Ferro, Mariana L. Lyra, Maurício Bacci, Cynara de Melo Rodovalho, Universidade Estadual Paulista (Unesp), and FIOCRUZ Fundacao Oswaldo Cruz
- Subjects
Genome evolution ,Mitochondrial DNA ,Atta laevigata ,lcsh:Medicine ,Genomics ,Biology ,Genome Complexity ,DNA sequencing ,Evolution, Molecular ,symbols.namesake ,Intergenic region ,RNA, Transfer ,Genetics ,Animals ,Genome Sequencing ,Molecular Biology Techniques ,Sequencing Techniques ,lcsh:Science ,Genome Evolution ,Molecular Biology ,Phylogeny ,Sanger sequencing ,Gene Rearrangement ,Multidisciplinary ,Ants ,lcsh:R ,Biology and Life Sciences ,Computational Biology ,Gene rearrangement ,biology.organism_classification ,Genome Analysis ,Evolutionary biology ,Genome, Mitochondrial ,symbols ,DNA, Intergenic ,lcsh:Q ,Transcriptome ,Sequence Analysis ,Zoology ,Entomology ,Ribosomes ,Research Article - Abstract
Made available in DSpace on 2014-12-03T13:11:38Z (GMT). No. of bitstreams: 0 Previous issue date: 2014-05-14Bitstream added on 2014-12-03T13:22:32Z : No. of bitstreams: 1 WOS000336857400055.pdf: 865116 bytes, checksum: 20f88de05abbbd64d24829428bf9b2d7 (MD5) Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP) Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq) In this paper we describe the nearly complete mitochondrial genome of the leaf-cutter ant Atta laevigata, assembled using transcriptomic libraries from Sanger and Illumina next generation sequencing (NGS), and PCR products. This mitogenome was found to be very large (18,729 bp), given the presence of 30 non-coding intergenic spacers (IGS) spanning 3,808 bp. A portion of the putative control region remained unsequenced. The gene content and organization correspond to that inferred for the ancestral pancrustacea, except for two tRNA gene rearrangements that have been described previously in other ants. The IGS were highly variable in length and dispersed through the mitogenome. This pattern was also found for the other hymenopterans in particular for the monophyletic Apocrita. These spacers with unknown function may be valuable for characterizing genome evolution and distinguishing closely related species and individuals. NGS provided better coverage than Sanger sequencing, especially for tRNA and ribosomal subunit genes, thus facilitating efforts to fill in sequence gaps. The results obtained showed that data from transcriptomic libraries contain valuable information for assembling mitogenomes. The present data also provide a source of molecular markers that will be very important for improving our understanding of genomic evolutionary processes and phylogenetic relationships among hymenopterans. UNESP Univ Estadual Paulista, Ctr Estudos Insetos Sociais, Sao Paulo, Brazil FIOCRUZ Fundacao Oswaldo Cruz, Inst Oswaldo Cruz, Rio De Janeiro, Brazil UNESP Univ Estadual Paulista, Dept Zool, Sao Paulo, Brazil UNESP Univ Estadual Paulista, Dept Bioquim & Microbiol, Sao Paulo, Brazil UNESP Univ Estadual Paulista, Ctr Estudos Insetos Sociais, Sao Paulo, Brazil UNESP Univ Estadual Paulista, Dept Zool, Sao Paulo, Brazil UNESP Univ Estadual Paulista, Dept Bioquim & Microbiol, Sao Paulo, Brazil FAPESP: 11/06367-8 FAPESP: 11/50226-0 CNPq: 311562/2012-4 CNPq: 487639/2012-0
- Published
- 2014