1. Global gene expression profiling in PAI-1 knockout murine heart and kidney: molecular basis of cardiac-selective fibrosis
- Author
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Douglas E. Vaughan, Raj Kishore, Sheila B. Murphy, and Asish K. Ghosh
- Subjects
Anatomy and Physiology ,Mouse ,Microarrays ,Muscle Proteins ,lcsh:Medicine ,Kidney ,Cardiovascular ,Polymerase Chain Reaction ,Mice ,0302 clinical medicine ,Transforming Growth Factor beta ,Fibrosis ,Immune Physiology ,Molecular Cell Biology ,Genetics of the Immune System ,Cluster Analysis ,lcsh:Science ,Klotho ,Mice, Knockout ,Regulation of gene expression ,0303 health sciences ,Multidisciplinary ,Nuclear Proteins ,Tissue Inhibitor of Metalloproteinases ,Animal Models ,3. Good health ,Cell biology ,KLF6 ,Organ Specificity ,Nephrology ,030220 oncology & carcinogenesis ,Knockout mouse ,Cytokines ,Medicine ,Cardiomyopathies ,Research Article ,DNA transcription ,Immunology ,Proteinase Inhibitory Proteins, Secretory ,Biology ,03 medical and health sciences ,Model Organisms ,Plasminogen Activator Inhibitor 1 ,Genetics ,medicine ,Animals ,RNA, Messenger ,Early Growth Response Protein 1 ,030304 developmental biology ,Tissue Inhibitor of Metalloproteinase-1 ,Microarray analysis techniques ,Gene Expression Profiling ,Myocardium ,lcsh:R ,Endothelial Cells ,Reproducibility of Results ,Computational Biology ,Kidney metabolism ,medicine.disease ,Molecular biology ,Mice, Inbred C57BL ,Repressor Proteins ,Gene expression profiling ,Gene Expression Regulation ,lcsh:Q ,Gene expression - Abstract
Fibrosis is defined as an abnormal matrix remodeling due to excessive synthesis and accumulation of extracellular matrix proteins in tissues during wound healing or in response to chemical, mechanical and immunological stresses. At present, there is no effective therapy for organ fibrosis. Previous studies demonstrated that aged plasminogen activator inhibitor-1 (PAI-1) knockout mice develop spontaneously cardiac-selective fibrosis without affecting any other organs. We hypothesized that differential expressions of profibrotic and antifibrotic genes in PAI-1 knockout hearts and unaffected organs lead to cardiac selective fibrosis. In order to address this prediction, we have used a genome-wide gene expression profiling of transcripts derived from aged PAI-1 knockout hearts and kidneys. The variations of global gene expression profiling were compared within four groups: wildtype heart vs. knockout heart; wildtype kidney vs. knockout kidney; knockout heart vs. knockout kidney and wildtype heart vs. wildtype kidney. Analysis of illumina-based microarray data revealed that several genes involved in different biological processes such as immune system processing, response to stress, cytokine signaling, cell proliferation, adhesion, migration, matrix organization and transcriptional regulation were affected in hearts and kidneys by the absence of PAI-1, a potent inhibitor of urokinase and tissue-type plasminogen activator. Importantly, the expressions of a number of genes, involved in profibrotic pathways including Ankrd1, Pi16, Egr1, Scx, Timp1, Timp2, Klf6, Loxl1 and Klotho, were deregulated in PAI-1 knockout hearts compared to wildtype hearts and PAI-1 knockout kidneys. While the levels of Ankrd1, Pi16 and Timp1 proteins were elevated during EndMT, the level of Timp4 protein was decreased. To our knowledge, this is the first comprehensive report on the influence of PAI-1 on global gene expression profiling in the heart and kidney and its implication in fibrogenesis and several other biological processes. The significance of these observations in the light of heart-specific profibrotic signaling and fibrogenesis are discussed.
- Published
- 2013