1. Usefulness of next-generation sequencing for laboratory diagnosis of rickettsiosis.
- Author
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Xing F, Deng C, Huang J, Yuan Y, Luo Z, Lo SKF, Lau SKP, and Woo PCY
- Subjects
- Humans, Female, Male, Middle Aged, Aged, Metagenomics methods, Adult, Orientia tsutsugamushi genetics, Orientia tsutsugamushi isolation & purification, Scrub Typhus diagnosis, Scrub Typhus microbiology, Molecular Diagnostic Techniques methods, Rickettsia Infections diagnosis, Rickettsia Infections microbiology, High-Throughput Nucleotide Sequencing methods, Rickettsia genetics, Rickettsia isolation & purification
- Abstract
Rickettsiosis includes a diversity of culture-negative non-specific systemic infections. Laboratory diagnosis of rickettsiosis is often not easy. In this 12-month study, six patients with a variety of rickettsia infections of the spotted fever group, typhus group and scrub typhus were diagnosed directly or indirectly by metagenomic next-generation sequencing (mNGS). The patient with Japanese spotted fever was rapidly made when mNGS analysis of the patient's blood revealed Rickettsia japonica sequences. For the two patients with Rickettsia felis chest infections, the bacterium was detected in the bronchoalveolar lavage of one case and lung biopsy of the other. Both patients had underlying malignancies, carcinoma of the breast and carcinoma of the lung respectively, and were on chemotherapy with immunosuppressive effect. For the remaining three patients who presented over a period of 13 weeks, all had fever, headache and the typical eschar. They also had increased serum transaminases and responded promptly to doxycycline. However, the Weil-Felix test results of all three patients were negative. Since we considered the three cases typical of rickettsiosis, we submitted their serum samples for mNGS analysis. Results showed that Orientia tsutsugamushi sequences were present in the serum of one case. In view of the positive mNGS results, we repeated the Weil-Felix test for the residual sera of all three patients and it revealed that those of the other two cases showed OX-19 titers of 1:640 and 1:160 respectively, inferring that these two patients probably had rickettsiosis of the typhus group. As for the patient positive for O. tsutsugamushi sequences, we also detected IgM for O. tsutsugamushi in the serum, which double confirmed that it was a case of scrub typhus. mNGS is an important molecular tool and can complement serology for laboratory diagnosis of rickettsiosis., Competing Interests: I have read the journal’s policy and the authors of this manuscript have the following competing interests: PCYW has provided scientific advisory/laboratory services for Gilead Sciences, Incorporated; International Health Management Associates, Incorporated; Merck & Corporation, Incorporated; Micología Molecular S.L. and Pfizer, Incorporated. The other authors report no conflict of interest. The authors alone are responsible for the content and the writing of the manuscript., (Copyright: © 2024 Xing et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.)
- Published
- 2024
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