1. Analysis of SOX2-Regulated Transcriptome in Glioma Stem Cells
- Author
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Acanda de la Rocha, Arlet M., López-Bertoni, Hernando, Guruceaga, Elizabeth, González-Huarriz, Marisol, Martínez-Vélez, Naiara, Xipell, Enric, Fueyo, Juan, Gomez-Manzano, Candelaria, and Alonso, Marta M.
- Subjects
0301 basic medicine ,endocrine system ,Microarrays ,Library science ,lcsh:Medicine ,Biology ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,03 medical and health sciences ,Extraction techniques ,Medicine and Health Sciences ,Genetics ,media_common.cataloged_instance ,Blastomas ,Small interfering RNAs ,European union ,lcsh:Science ,Non-coding RNA ,Neurological Tumors ,media_common ,Multidisciplinary ,Biology and life sciences ,Gene Ontologies ,lcsh:R ,fungi ,Cancers and Neoplasms ,Computational Biology ,General Medicine ,Genomics ,Genome Analysis ,RNA extraction ,Gene regulation ,Nucleic acids ,Research and analysis methods ,030104 developmental biology ,Bioassays and Physiological Analysis ,Oncology ,Neurology ,Cancer research ,Long non-coding RNAs ,RNA ,Christian ministry ,lcsh:Q ,Gene expression ,General Agricultural and Biological Sciences ,Transcriptome Analysis ,Glioblastoma Multiforme ,Research Article - Abstract
Introduction Glioblastoma is the most malignant brain tumor in adults and is associated with poor sur- vival despite multimodal treatments. Glioma stem-like cells (GSCs) are cells functionally defined by their self-renewal potential and the ability to reconstitute the original tumor upon orthotopic implantation. They have been postulated to be the culprit of glioma chemo- and radio-resistance ultimately leading to relapse. Understanding the molecular circuits govern- ing the GSC compartment is essential. SOX2, a critical transcription regulator of embryonic and neural stem cell function, is deregulated in GSCs however; the precise molecular path- ways regulated by this gene in GSCs remain poorly understood. Results We performed a genome-wide analysis of SOX2-regulated transcripts in GSCs, using a microarray. We identified a total of 2048 differentially expressed coding transcripts and 261 non-coding transcripts. Cell adhesion and cell-cell signaling are among the most enriched terms using Gene Ontology (GO) classification. The pathways altered after SOX2 down- modulation includes multiple cellular processes such as amino-acid metabolism and inter- cellular signaling cascades. We also defined and classified the set of non-coding transcripts differentially expressed regulated by SOX2 in GSCs, and validated two of them. Conclusions We present a comprehensive analysis of the transcriptome controlled by SOX2 in GSCs, gaining insights in the understanding of the potential roles of SOX2 in glioblastoma.
- Published
- 2016