1. Identification of patterns in biological sequences at the ALGGEN server: PROMO and MALGEN
- Author
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Llorenç Roselló, Mario Huerta, Domènec Farré, Xavier Messeguer, M. Mar Albà, Roman Roset, and José-Enrique Adsuara
- Subjects
Sequence analysis ,Sequence alignment ,Computational biology ,Regulatory Sequences, Nucleic Acid ,Biology ,Bioinformatics ,Conserved sequence ,Documentation ,Computer Graphics ,Genetics ,Animals ,Humans ,Conserved Sequence ,Sequence (medicine) ,Internet ,Binding Sites ,Genome ,business.industry ,Sequence Analysis, DNA ,Articles ,DNA binding site ,Identification (information) ,The Internet ,business ,Sequence Alignment ,Software ,Transcription Factors - Abstract
In this paper we present several web-based tools to identify conserved patterns in sequences. In particular we present details on the functionality of PROMO version 2.0, a program for the prediction of transcription factor binding site in a single sequence or in a group of related sequences and, of MALGEN, a tool to visualize sequence correspondences among long DNA sequences. The web tools and associated documentation can be accessed at http://www.lsi.upc.es/~alggen (RESEARCH link).
- Published
- 2003
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