1. Analysis of deficiency of adenosine deaminase 2 pathogenesis based on single-cell RNA sequencing of monocytes
- Author
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Patrycja Hoffmann, Neal S. Young, Amanda K. Ombrello, Shouguo Gao, Carrie Diamond, Naoki Watanabe, Zhijie Wu, Sai Batchu, Lemlem Alemu, Diego Quinones Raffo, Sachiko Kajigaya, and Deborah L. Stone
- Subjects
Adult ,Male ,0301 basic medicine ,Cell signaling ,Adolescent ,Adenosine Deaminase ,CD14 ,Immunology ,Inflammation ,Biology ,Monocytes ,Young Adult ,03 medical and health sciences ,0302 clinical medicine ,Immune system ,Agammaglobulinemia ,Gene expression ,medicine ,Humans ,Receptors, Tumor Necrosis Factor, Type II ,Immunology and Allergy ,Macrophage ,RNA, Messenger ,Child ,Sequence Analysis, RNA ,Gene Expression Profiling ,Monocyte ,NF-kappa B ,Cell Biology ,Middle Aged ,Tissue Donors ,030104 developmental biology ,medicine.anatomical_structure ,Gene Expression Regulation ,Child, Preschool ,030220 oncology & carcinogenesis ,Mutation ,Cytokines ,Intercellular Signaling Peptides and Proteins ,Female ,Severe Combined Immunodeficiency ,Tumor necrosis factor alpha ,Interferons ,Single-Cell Analysis ,medicine.symptom ,Signal Transduction - Abstract
Deficiency of adenosine deaminase 2 (DADA2) is a rare autosomal recessive disease caused by loss-of-function variants in the ADA2 gene. DADA2 typically presents in childhood and is characterized by vasculopathy, stroke, inflammation, immunodeficiency, as well as hematologic manifestations. ADA2 protein is predominantly present in stimulated monocytes, dendritic cells, and macrophages. To elucidate molecular mechanisms in DADA2, CD14+ monocytes from 14 patients and 6 healthy donors were analyzed using single-cell RNA sequencing (scRNA-seq). Monocytes were purified by positive selection based on CD14 expression. Subpopulations were imputed from their transcriptomes. Based on scRNA-seq, monocytes could be classified as classical, intermediate, and nonclassical. Further, we used gene pathway analytics to interpret patterns of up- and down-regulated gene transcription. In DADA2, the frequency of nonclassical monocytes was higher compared with that of healthy donors, and M1 macrophage markers were up-regulated in patients. By comparing gene expression of each monocyte subtype between patients and healthy donors, we identified upregulated immune response pathways, including IFNα/β and IFNγ signaling, in all monocyte subtypes. Distinctively, the TNFR2 noncanonical NF-κB pathway was up-regulated only in nonclassical monocytes. Patients’ plasma showed increased IFNγ and TNFα levels. Our results suggest that elevated IFNγ activates cell signaling, leading to differentiation into M1 macrophages from monocytes and release of TNFα. Immune responses and more general response to stimuli pathways were up-regulated in DADA2 monocytes, and protein synthesis pathways were down-regulated, perhaps as stress responses. Our identification of novel aberrant immune pathways has implications for therapeutic approaches in DADA2 (registered at clinicaltrials.gov NCT00071045).
- Published
- 2021
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