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Aims: To describe microbial diversity, biofilm composition and biogeochemical potential within biofilms in the water overlying uranium tailings characterized by high pH, high metal concentration and low permeability., Methods and Results: To estimate microbial diversity in biofilms formed in water columns overlying uranium mine tailings, culture-dependent and culture-independent methods were employed. High-throughput sequencing revealed the presence of 11 phyla; however, the majority of the sequences were affiliated with four major lineages (Proteobacteria, Bacteroidetes, Actinobacteria and Firmicutes) as confirmed by culture-based methods. Dominant phylotypes were closely related to methylotrophs (Methylobacterium) and bacterial groups able to utilize complex hydrocarbons (Aquabacterium and Dechloromonas). Microbial diversity in biofilms from the 13 m depth was significantly different that in biofilms from 1 to 41 m (P < 0·05). Phylotypes closely related to iron-reducing bacteria were identified at each depth; whereas sulphate-, thio-sulphate-, sulphite- and sulphur-reducing bacteria, at low abundance, were only detected at lower depths. Confocal scanning laser microscopy (CSLM) was used to investigate polymer quantity and composition of the biofilm components, and principal component analysis of the CLSM data revealed that the relative abundance of α-L-fucose and N-acetyl-glucosamine/lipopolysaccharide residues separated tailings-water interface biofilms from those from other depths. Reduced (ferrous) iron was detected within all the biofilm samples examined by scanning X-ray transmission microscopy., Conclusions: Microbial communities within the water column covering a highly alkaline uranium tailings body form biofilms with microenvironments where iron reduction takes place., Significance and Impact of the Study: This study demonstrates the biogeochemical potential of microbial biofilm communities in the water column covering an alkaline uranium tailings body; specifically, the nature of the bacterial groups detected (Aquabacterium, Dechloromonas) and the presence of reduced iron suggest that complex hydrocarbons are available for bacterial growth and geochemical change, such as iron reduction, can occur even though the system bulk phase is predominantly oxic., (© 2014 The Society for Applied Microbiology.)

It is necessary to obtain the transfer factor (TF) of long-lived radionuclides because soil type and vegetation can affect TF. We studied the food crops commonly consumed by the general public of Kanyakumari district of south India. The main focus was on rice, fruits, vegetables and tapioca because the consumption of these is high. The soil to rice TF for the radionuclides, (226)Ra, (232)Th, (238)U and (40) K are 8.8×10(-2), 14.2×10(-2), 5.8×10(-2) and 6.3×10(-2), respectively. The TF of tapioca for (226)Ra, (232)Th, (238)U and (40) K are 6.2×10(-2) , 11×10(-2), 1.9×10(-2) and 8.9×10(-2), respectively. For fruits and vegetables, the TFs are low. In the majority of the crops the non-edible parts accumulate more radionuclides than the edible parts.

Practical removal of radioactivity from polluted soil in Fukushima, Japan was done using a photosynthetic bacterium, Rhodobacter sphaeroides SSI, immobilized in alginate beads. The beads were put in a mesh bag and soaked in which soil was suspended (5 kg of soil/10 L of tap water). The radioactivity of the broth decreased by 31% after 15 d of aerobic treatment. When lactic acid bacterial culture broth was added to the suspend broth, about 50% of the radioactivity was transferred to a suspend broth fraction consisting of small particles from the soil after 3 d of fermentation and 20 s of sedimentation. The results suggest that organic matter in the soil was decomposed by anaerobic digestion and lactic acid fermentation simultaneously, and was then transferred into the liquid as small particles. With combined treatment by anaerobic digestion and lactic acid fermentation for 5 d and immobilized bead aerobic treatment for an additional 19 d, the radioactivity of suspend broth decreased by 66%. The radioactivity of the original soil (10.56 µSv/h) ultimately decreased by 67% (3.52 µSv/h) after the combined treatment.

Due to the physico-chemical similarities of caesium (Cs(+)) to potassium (K(+)) on the one hand and strontium (Sr(2+)) to calcium (Ca(2+)) on the other hand, both elements can easily be taken up by plants and thus enter the food chain. This could be detrimental when radionuclides such as (137)Cs and (90)Sr are involved. In this study, both genetic and physiological aspects of Cs(+) and Sr(2+) accumulation in Arabidopsis thaliana were investigated using 86 Arabidopsis accessions and a segregating F(2) population of the low Cs(+) accumulating Sq-1 (Ascot, UK) crossed with the high uptaking Sorbo (Khurmatov, Tajikistan). Hydroponically grown plants were exposed to subtoxic levels of Cs(+) and Sr(2+) using radioactive isotopes as tracers. In the natural accessions shoot concentration of Cs(+) as well as Sr(2+) varied about 2-fold, whereas its heritability ranged for both ions between 0.60 and 0.73. Shoot accumulation of Cs(+) and Sr(2+) could be compromised by increasing concentrations of their essential analogues K(+) and Ca(2+), respectively, causing a reduction of up to 80%. In the case of the segregating F(2)/F(3) population Sq-1×Sorbo, this study identified several QTL for the trait Cs(+) and Sr(2+) accumulation, with main QTL on chromosomes 1 and 5. According to the correlation and discrimination surveys combined with QTL-analysis Cs(+) and Sr(2+) uptake seemed to be mediated mostly via non-selective cation channels. A polymorphism, affecting amino acids close to the K(+)-pore of one candidate, CYCLIC-NUCLEOTIDE-GATED CHANNEL 1 (CNGC1), was identified in Sorbo and associated with high Cs(+) concentrating accessions.

In order to develop effective bioremediation strategies for radionuclide contaminants, the composition and metabolic potential of microbial communities need to be better understood, especially in highly contaminated subsurface sediments for which little cultivation-independent information is available. In this study, we characterized metabolically active and total microbial communities associated with uranium-contaminated subsurface sediments along geochemical gradients. DNA and RNA were extracted and amplified from four sediment-depth intervals representing moderately acidic (pH 3.7) to near-neutral (pH 6.7) conditions. Phylotypes related to Proteobacteria (Alpha-, Beta-, Delta- and Gammaproteobacteria), Bacteroidetes, Actinobacteria, Firmicutes and Planctomycetes were detected in DNA- and RNA-derived clone libraries. Diversity and numerical dominance of phylotypes were observed to correspond to changes in sediment geochemistry and rates of microbial activity, suggesting that geochemical conditions have selected for well-adapted taxa. Sequences closely related to nitrate-reducing bacteria represented 28% and 43% of clones from the total and metabolically active fractions of the microbial community, respectively. This study provides the first detailed analysis of total and metabolically active microbial communities in radionuclide-contaminated subsurface sediments. Our microbial community analysis, in conjunction with rates of microbial activity, points to several groups of nitrate-reducers that appear to be well adapted to environmental conditions common to radionuclide-contaminated sites.

The use of phosphate fertilizers on agricultural farms enhances gamma-ray activity concentration in the farms and therefore absorbed dose rates to the public. The most common natural radionuclides in fertilizer and soil are (40)K, (226)Ra and (232)Th. Agricultural farms at four locations in two districts in Pakistan consisting of saline and normal soils had been under fertilizer treatment for the past 30, 20, 10 and 0 y, therefore, natural radioactivity has been measured in soil samples from these sites to investigate the effect of fertilizers in soil and wheat grown in these sites. Radioactivity measured in soil of the sites under investigation was 550-644, 20-35 and 42-58 Bq kg(-1) for (40)K, (226)Ra and (232)Th, respectively. Wheat was grown in the farms and radioactivity transferred from soil to roots, shoots and grains was also measured. Relatively high natural radioactivity has been observed in the fertilized agricultural farms and in the wheat plants grown in these farms. From the total amount of an element uptaken in a plant, distribution of the element in different parts of the plant has been studied. The distribution of potassium was almost uniform in roots, shoots and grains of wheat; that of radium was different in the three parts of wheat; and that of thorium was almost equal in shoots and grains but quite large in the roots. Soils to grain transfer factors of the natural radionuclides have been determined as 3-4 x 10(-2) for (226)Ra, 2-3 x 10(-2) for (232)Th and 17-20 x 10(-2) for (40)K. Annual doses of (40)K and (226)Ra received by intake of grain products have been estimated to lie within range while the dose received from intake of (232)Th is larger than the range specified in UNSCEAR report 2000.

Organically-bound 3H (OBT) concentrations in unhulled rice samples harvested between 1979 to 1991 are reported. The sample reaped in 1979 had the highest OBT concentration. OBT concentrations in the samples yielded recently have been at approximately 1 Bq (L-combustion water)-1 or less.

Root-uptake of iodine by rice plants from two different soil types was studied using an 125I tracer. At harvest, the 125I concentration was lowest in brown rice (hulled rice) followed by the rachis, stem and leaves. The transfer factors of iodine for brown rice grown on Andosol and Gray lowland soil (fine texture) respectively were 0.007 and 0.002. The ratio of the radioiodine concentrations between flag leaf (first leaf blade) and brown rice was about 400. Transfer factors in plants grown on Andosol were higher than those grown on Gray lowland soil. This may be related to the high 125I concentration in the Andosol soil solutions, particularly after the flowering period. The adsorption and desorption of iodine in the soil was effected by flooding with water and also by the cultivation of rice plants. The radioiodine concentration in the soil solutions first increased in the upper soil layer than in the lower layer. The desorption pattern of iodine was influenced by the soil types.