21 results on '"Dierikx, Cindy"'
Search Results
2. Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment : a pooled analysis
- Author
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Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C., van den Bunt, Gerrita, Wagenaar, Jaap A., Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline A., Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H., Mevius, Dik J, Heederik, Dick J J, Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C., van den Bunt, Gerrita, Wagenaar, Jaap A., Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline A., Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H., Mevius, Dik J, and Heederik, Dick J J
- Published
- 2018
3. Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis
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LS Klinisch Onderzoek Wagenaar, LS GZ Landbouwhuisdieren, dIRAS RA-I&I RA, One Health Microbieel, Sub Algemeen Artificial Intelligence, dI&I I&I-4, dIRAS RA-I&I I&I, Sub RIVM, Dep IRAS, Dep Infectieziekten Immunologie, LS IRAS VPH MBR (microbiol.risico sch.), Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C, van den Bunt, Gerrita, Wagenaar, Jaap A, Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline, Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G J, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H, Mevius, Dik J, Heederik, Dick J J, LS Klinisch Onderzoek Wagenaar, LS GZ Landbouwhuisdieren, dIRAS RA-I&I RA, One Health Microbieel, Sub Algemeen Artificial Intelligence, dI&I I&I-4, dIRAS RA-I&I I&I, Sub RIVM, Dep IRAS, Dep Infectieziekten Immunologie, LS IRAS VPH MBR (microbiol.risico sch.), Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C, van den Bunt, Gerrita, Wagenaar, Jaap A, Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline, Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G J, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H, Mevius, Dik J, and Heederik, Dick J J
- Published
- 2018
4. Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis
- Author
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Epi Infectieziekten, MMB, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Epi Infectieziekten Team 1, Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C., van den Bunt, Gerrita, Wagenaar, Jaap A., Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline A., Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H., Mevius, Dik J, Heederik, Dick J J, Epi Infectieziekten, MMB, Infection & Immunity, JC onderzoeksprogramma Infectieziekten, Epi Infectieziekten Team 1, Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C., van den Bunt, Gerrita, Wagenaar, Jaap A., Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline A., Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H., Mevius, Dik J, and Heederik, Dick J J
- Published
- 2018
5. Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis
- Author
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One Health Microbieel, Sub Algemeen Artificial Intelligence, LS Klinisch Onderzoek Wagenaar, dI&I I&I-4, Dep Infectieziekten Immunologie, dIRAS RA-I&I I&I, LS IRAS VPH MBR (microbiol.risico sch.), LS GZ Landbouwhuisdieren, dIRAS RA-I&I RA, Sub RIVM, Dep IRAS, Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C, van den Bunt, Gerrita, Wagenaar, Jaap A, Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline, Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G J, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H, Mevius, Dik J, Heederik, Dick J J, One Health Microbieel, Sub Algemeen Artificial Intelligence, LS Klinisch Onderzoek Wagenaar, dI&I I&I-4, Dep Infectieziekten Immunologie, dIRAS RA-I&I I&I, LS IRAS VPH MBR (microbiol.risico sch.), LS GZ Landbouwhuisdieren, dIRAS RA-I&I RA, Sub RIVM, Dep IRAS, Dorado-García, Alejandro, Smid, Joost H, van Pelt, Wilfrid, Bonten, Marc J M, Fluit, Ad C, van den Bunt, Gerrita, Wagenaar, Jaap A, Hordijk, Joost, Dierikx, Cindy M, Veldman, Kees T, de Koeijer, Aline, Dohmen, Wietske, Schmitt, Heike, Liakopoulos, Apostolos, Pacholewicz, Ewa, Lam, Theo J G M, Velthuis, Annet G J, Heuvelink, Annet, Gonggrijp, Maaike A, van Duijkeren, Engeline, van Hoek, Angela H A M, de Roda Husman, Ana Maria, Blaak, Hetty, Havelaar, Arie H, Mevius, Dik J, and Heederik, Dick J J
- Published
- 2018
6. Association between antimicrobial usage in livestock and antimicrobial resistance in Escherichia coli isolates from human urinary tract infections in the Netherlands, 2009-2020.
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Meijs AP, Chanamé-Pinedo LE, Deng H, Veldman KT, Brouwer MSM, van den Beld MJC, Dierikx CM, Sanders P, Wullings B, de Greeff SC, van Duijkeren E, Franz E, Pijnacker R, and Mughini-Gras L
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- Humans, Netherlands epidemiology, Animals, Microbial Sensitivity Tests, Cattle, Urinary Tract Infections microbiology, Urinary Tract Infections epidemiology, Urinary Tract Infections drug therapy, Escherichia coli drug effects, Escherichia coli isolation & purification, Livestock microbiology, Escherichia coli Infections microbiology, Escherichia coli Infections epidemiology, Escherichia coli Infections drug therapy, Anti-Bacterial Agents pharmacology, Drug Resistance, Bacterial
- Abstract
Background: In the last decade, veterinary antimicrobial usage (AMU) and antimicrobial resistance (AMR) among indicator bacteria in livestock have decreased substantially in the Netherlands. The extent to which this decrease has affected AMR levels among human infections remains unclear., Objectives: To assess the association between AMU in livestock and AMR in Escherichia coli isolates from human urinary tract infections (UTIs)., Methods: Data on AMR and AMU between 2009 and 2020 from Dutch national surveillance programmes for humans and livestock were used. Associations between AMU in four major livestock sectors and AMR in humans were assessed for 10 antimicrobial classes and the ESBL resistance profile, using logistic regression analysis. Associations between AMU and AMR in livestock, between AMR in livestock and in humans, and between AMU and AMR in humans were also assessed., Results: Statistical significance was reached for 16/31 of the tested associations between AMU in livestock and AMR in human E. coli UTIs. Of the significant associations, 11 were positive (OR 1.01-1.24), whereas 5 were negative (OR 0.96-0.99). All associations between human AMU and AMR in E. coli isolates from UTIs were positive and statistically significant. Weak but significant positive correlations were also observed between livestock AMR and human AMR., Conclusions: Although several significant associations between AMU in livestock and AMR in human UTIs caused by E. coli were observed, the associations between AMU and AMR were generally stronger within the human and animal populations. This indicates that potential zoonotic spread of AMR in E. coli causing human UTIs from livestock sources is limited., (© The Author(s) 2024. Published by Oxford University Press on behalf of British Society for Antimicrobial Chemotherapy. All rights reserved. For commercial re-use, please contact reprints@oup.com for reprints and translation rights for reprints. All other permissions can be obtained through our RightsLink service via the Permissions link on the article page on our site—for further information please contact journals.permissions@oup.com.)
- Published
- 2024
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7. Genomic comparison of mecC-carrying methicillin-resistant Staphylococcus aureus from hedgehogs and humans in the Netherlands.
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Dierikx C, Hengeveld P, Witteveen S, van Hoek A, van Santen-Verheuvel M, Montizaan M, Kik M, Maas M, Schouls L, Hendrickx A, and van Duijkeren E
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- Animals, Humans, Netherlands epidemiology, Bacterial Proteins genetics, Hedgehog Proteins, Genomics, Microbial Sensitivity Tests, Methicillin-Resistant Staphylococcus aureus genetics, Staphylococcal Infections epidemiology, Staphylococcal Infections veterinary
- Abstract
Objectives: MRSA carrying the mecC gene (mecC-MRSA) have been found in humans and animals worldwide. A high carriage rate of mecC-MRSA has been described among hedgehogs in different countries. We performed genomic comparison of mecC-MRSA from hedgehogs and humans using next-generation sequencing (NGS) to investigate possible zoonotic transmission in the Netherlands., Methods: Nasal swabs from hedgehogs (n = 105) were cultured using pre-enrichment and selective plates. Isolates were sequenced using Illumina NGS platforms. These data were compared with sequence data of mecC-MRSA (n = 62) from the Dutch national MRSA surveillance in humans., Results: Fifty hedgehogs were found to be MRSA positive, of which 48 carried mecC. A total of 60 mecC-MRSA isolates derived from 50 hedgehogs were compared with the human isolates. Fifty-nine mecC-MRSA from hedgehogs and all but one isolate from humans belonged to clonal complexes CC130 and CC1943. The mecC gene was located within the SCCmec XI element. Most mecC-MRSA did not carry other resistance genes besides mecC and blaZ. Two human isolates carried erm(C). Isolates differed in the presence of various virulence genes, which were linked to distinct STs and clonal complexes. Some isolates had up to 17 virulence genes, which underlines their pathogenic potential. No genetic clusters of hedgehog and human isolates were found., Conclusions: mecC-MRSA from hedgehogs and humans mainly belonged to the same two clonal complexes, indicating a common source. No firm evidence for recent zoonotic transmission was found. Further studies are needed to investigate the role of hedgehogs in the occurrence of mecC-MRSA in humans., (© The Author(s) 2023. Published by Oxford University Press on behalf of British Society for Antimicrobial Chemotherapy. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.)
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- 2023
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8. Multicentre evaluation of a selective isolation protocol for detection of mcr-positive E. coli and Salmonella spp. in food-producing animals and meat.
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Perrin-Guyomard A, Granier SA, Slettemeås JS, Anjum M, Randall L, AbuOun M, Pauly N, Irrgang A, Hammerl JA, Kjeldgaard JS, Hammerum A, Franco A, Skarżyńska M, Kamińska E, Wasyl D, Dierikx C, Börjesson S, Geurts Y, Haenni M, and Veldman K
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- Agar, Animals, Anti-Bacterial Agents pharmacology, Colistin pharmacology, Drug Resistance, Bacterial genetics, Escherichia coli Proteins genetics, Microbial Sensitivity Tests, Plasmids, Escherichia coli isolation & purification, Meat microbiology, Salmonella isolation & purification
- Abstract
This study was conducted to evaluate the performance of a screening protocol to detect and isolate mcr-positive Escherichia coli and Salmonella spp. from animal caecal content and meat samples. We used a multicentre approach involving 12 laboratories from nine European countries. All participants applied the same methodology combining a multiplex PCR performed on DNA extracted from a pre-enrichment step, followed by a selective culture step on three commercially available chromogenic agar plates. The test panel was composed of two negative samples and four samples artificially contaminated with E. coli and Salmonella spp. respectively harbouring mcr-1 or mcr-3 and mcr-4 or mcr-5 genes. PCR screening resulted in a specificity of 100% and a sensitivity of 83%. Sensitivity of each agar medium to detect mcr-positive colistin-resistant E. coli or Salmonella spp. strains was 86% for CHROMID
® Colistin R, 75% for CHROMagarTM COL-APSE and 70% for COLISTIGRAM. This combined method was effective to detect and isolate most of the E. coli or Salmonella spp. strains harbouring different mcr genes from food-producing animals and food products and might thus be used as a harmonized protocol for the screening of mcr genes in food-producing animals and food products in Europe., (© 2022 The Authors. Letters in Applied Microbiology published by John Wiley & Sons Ltd on behalf of Society for Applied Microbiology.)- Published
- 2022
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9. Gastric acid suppression, lifestyle factors and intestinal carriage of ESBL and carbapenemase-producing Enterobacterales: a nationwide population-based study.
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Willems RPJ, van Dijk K, Dierikx CM, Twisk JWR, van der Klis FRM, de Greeff SC, and Vandenbroucke-Grauls CMJE
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- Adult, Anti-Bacterial Agents pharmacology, Bacterial Proteins, Cross-Sectional Studies, Feces, Humans, Life Style, Netherlands epidemiology, Prevalence, Risk Factors, Seroepidemiologic Studies, beta-Lactamases genetics, Carrier State epidemiology, Carrier State microbiology, Enterobacteriaceae genetics, Enterobacteriaceae Infections drug therapy, Enterobacteriaceae Infections epidemiology, Gastric Acid
- Abstract
Background: Gastric acid-suppressive therapy has been suggested to increase the risk for intestinal carriage of MDR Enterobacterales, but there is scarce community-based evidence substantiating this risk., Objectives: To investigate if acid-suppressant use is associated with a risk of intestinal carriage of ESBL and carbapenemase-producing Enterobacterales (ESBL-E) in the open population, and to assess possible modifying factors., Methods: Within the framework of a nationwide seroprevalence study, we identified a population-based cross-sectional cohort comprising 2746 adults (≥18 years), who provided stool specimens between February 2016 and June 2017. Specimens were tested by phenotypic assays and confirmatory genotype analysis to detect carriage of ESBL-E. Covariate data were extracted from self-administered questionnaires. ORs and 95% CIs were estimated using multivariable multilevel logistic regression, controlling for confounders informed by directed acyclic graphs., Results: Among 2746 participants, 316 (11.5%) used acid suppressants; the prevalence of ESBL-E carriage was 7.4% (95% CI, 6.1%-8.6%). Current use of acid suppressants was not associated with ESBL-E carriage (adjusted OR [aOR], 1.05; 95% CI, 0.64-1.74); lifestyle and comorbidity did not modify this association. A higher BMI (≥25 kg/m2) (aOR, 1.42 [95% CI, 1.02-1.98]), non-Western ethnic origin (aOR, 1.96 [95% CI, 1.34-2.87]), travel to Eastern-Mediterranean, Western-Pacific or South-East Asia regions (aOR, 3.16 [95% CI, 1.71-5.83]) were associated with ESBL-E carriage. Sensitivity analyses confirmed these results; spline analysis supported a BMI-associated risk., Conclusions: In this open population study, current use of acid suppressants was not associated with ESBL-E carriage. Travel to high-endemic regions and non-Western ethnicity were confirmed as risk factors, while a higher BMI emerged as a potential new risk for ESBL-E carriage., (© The Author(s) 2021. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy.)
- Published
- 2021
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10. Prolonged carriage of (livestock-associated) MRSA in individuals without professional livestock contact.
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Meijs AP, Hengeveld PD, Dierikx CM, Maassen CBM, de Greeff SC, de Haan A, Bosch T, and van Duijkeren E
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- Adult, Animals, Carrier State epidemiology, Cross-Sectional Studies, Humans, Livestock, Multilocus Sequence Typing, Methicillin-Resistant Staphylococcus aureus genetics, Staphylococcal Infections epidemiology
- Abstract
Objectives: To investigate prolonged carriage of MRSA in adults from the general population living in a livestock-dense area, using WGS., Methods: A cross-sectional study during 2014-15 among 2492 adults without professional livestock contact identified 14 (0.6%) nasal MRSA carriers, 10 of which carried livestock-associated (LA)-MRSA of multiple-locus variable-number tandem repeat analysis (MLVA) complex (MC) 398. Two years later, 12 MRSA-positive and 88 MRSA-negative participants provided a second nasal swab and filled in a short questionnaire. Isolates from persons who were MRSA positive at both timepoints were compared using MLVA and isolates with the same MLVA type were sequenced. The WGS data were used for core-genome MLST (cgMLST) and resistome analysis, including sequenced isolates from the national MRSA surveillance., Results: All MRSA-negative persons tested negative again, while 6 of the 12 initially MRSA-positive persons tested positive again. MLVA revealed that isolate pairs from five individuals had the same MLVA type, of which three were LA-MRSA. cgMLST showed that the distance between these isolate pairs ranged between 3 and 13 genes, while the minimum distance to unrelated isolates from the national MRSA surveillance was 38 genes. Moreover, the resistome present in the five isolate pairs was identical within each pair. None of the prolonged carriers was hospitalized during the 3 months before the sampling moment and none of them with LA-MRSA had contact with livestock in this period., Conclusions: Prolonged carriage of MRSA, including LA-MRSA, can be demonstrated after more than 30 months in persons without professional livestock contact., (© The Author(s) 2020. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2020
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11. Do vegetarians less frequently carry ESBL/pAmpC-producing Escherichia coli/Klebsiella pneumoniae compared with non-vegetarians?
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Meijs AP, Gijsbers EF, Hengeveld PD, Veenman C, van Roon AM, van Hoek AHAM, de Greeff SC, van Duijkeren E, and Dierikx CM
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- Africa, Animals, Anti-Bacterial Agents, Asia, Bacterial Proteins genetics, Escherichia coli genetics, Humans, Multilocus Sequence Typing, Plasmids, Vegetarians, beta-Lactamases genetics, Escherichia coli Infections epidemiology, Klebsiella pneumoniae genetics
- Abstract
Background: ESBL and plasmid-mediated AmpC (pAmpC)-producing Enterobacteriaceae are frequently found on meat products in Dutch retail, especially on poultry., Objectives: We investigated whether vegetarians are at lower risk of carrying ESBL/pAmpC-producing Escherichia coli/Klebsiella pneumoniae (ESBL-E/K) compared with persons who consume meat., Methods: Vegetarians, pescatarians (vegetarians who eat fish) and non-vegetarians (persons who eat meat at least three times per week) were asked to send in a faecal sample and a questionnaire. ESBL-E/K were cultured and MLSTs were determined. ESBL/pAmpC genes were analysed using PCR and sequencing. The risk of ESBL-E/K carriage in the three study groups was analysed using multivariable logistic regression., Results: Prevalence of ESBL-E/K carriage was 8.0% in vegetarians (63/785; 95% CI 6.3-10.1), 6.9% in pescatarians (27/392; 95% CI 4.8-9.8) and 3.8% in non-vegetarians (14/365; 95% CI 2.3-6.3). Multivariable analysis showed an OR for ESBL-E/K carriage of 2.2 for vegetarians (95% CI 1.2-4.0) and 1.6 for pescatarians (95% CI 0.8-3.2) compared with non-vegetarians. The predominant MLST was E. coli ST131 and the most common ESBL genes were blaCTX-M-15, blaCTX-M-27, blaCTX-M-14 and blaCTX-M-1 in all diet groups. Independent risk factors for ESBL-E/K carriage were travel to Africa/Latin America/Asia (OR 4.6; 95% CI 2.8-7.7) in the past 6 months and rarely/never washing hands before food preparation (OR 2.5; 95% CI 1.2-5.0)., Conclusions: Vegetarians and pescatarians did not have a lower risk of ESBL-E/K carriage compared with non-vegetarians, indicating that eating meat is not an important risk factor for ESBL-E/K carriage., (© The Author(s) 2019. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2020
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12. Transmission of ESBL-producing Escherichia coli between broilers and humans on broiler farms.
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van Hoek AHAM, Dierikx C, Bosch T, Schouls L, van Duijkeren E, and Visser M
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- Animals, Anti-Bacterial Agents pharmacology, Chickens, Escherichia coli genetics, Farms, Humans, Multilocus Sequence Typing, Plasmids genetics, beta-Lactamases genetics, Escherichia coli Infections epidemiology, Escherichia coli Infections veterinary
- Abstract
Background: ESBL and AmpC β-lactamases are an increasing concern for public health. Studies suggest that ESBL/pAmpC-producing Escherichia coli and their plasmids carrying antibiotic resistance genes can spread from broilers to humans working or living on broiler farms. These studies used traditional typing methods, which may not have provided sufficient resolution to reliably assess the relatedness of these isolates., Methods: Eleven suspected transmission events among broilers and humans living/working on eight broiler farms were investigated using whole-genome short-read (Illumina) and long-read sequencing (PacBio). Core genome MLST (cgMLST) was performed to investigate the occurrence of strain transmission. Horizontal plasmid and gene transfer were analysed using BLAST., Results: Of eight suspected strain transmission events, six were confirmed. The isolate pairs had identical ESBL/AmpC genes and fewer than eight allelic differences according to the cgMLST, and five had an almost identical plasmid composition. On one of the farms, cgMLST revealed that the isolate pairs belonging to ST10 from a broiler and a household member of the farmer had 475 different alleles, but that the plasmids were identical, indicating horizontal transfer of mobile elements rather than strain transfer. Of three suspected horizontal plasmid transmission events, one was confirmed. In addition, gene transfer between plasmids was found., Conclusions: The present study confirms transmission of strains as well as horizontal plasmid and gene transfer between broilers and farmers and household members on the same farm. WGS is an important tool to confirm suspected zoonotic strain and resistance gene transmission., (© The Author(s) 2019. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For permissions, please email: journals.permissions@oup.com.)
- Published
- 2020
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13. Longitudinal study of ESBL Escherichia coli carriage on an organic broiler farm.
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van Hoek AHAM, Veenman C, Florijn A, Huijbers PMC, Graat EAM, de Greeff S, Dierikx CM, and van Duijkeren E
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- Animals, Bacterial Typing Techniques, Carrier State microbiology, Chickens microbiology, Drug Resistance, Bacterial genetics, Escherichia coli enzymology, Escherichia coli Infections transmission, Longitudinal Studies, Multilocus Sequence Typing, Organic Agriculture, Plasmids classification, Plasmids genetics, beta-Lactamases metabolism, Carrier State veterinary, Escherichia coli isolation & purification, Escherichia coli Infections veterinary, Gene Transfer, Horizontal, Poultry Diseases microbiology
- Abstract
Objectives: To determine the molecular characteristics of ESBL-producing Escherichia coli (ESBL-E) collected during a longitudinal study on an organic broiler farm in order to investigate clonal expansion and horizontal gene transfer., Methods: Isolates were obtained from a longitudinal study performed previously on an organic broiler fattening farm. Samples from individually followed-up broilers, the broiler house, the transport van and persons that took the samples, taken at several timepoints (days 1, 3, 4, 7, 10, 42 and 70) within a production round and during the consecutive one (days 1, 2, 3 and 70), had been investigated for the occurrence of ESBL-E. In the current study, ESBL genes and MLST STs of these ESBL-E were determined. Plasmids were characterized and subtyped., Results: On arrival in round_1, ESBL-E of ST88 predominated, while on days 3, 4, 7 and 10 ST10 was most often found and at slaughter age ST155 and ST1551 prevailed. A shift in STs was also observed in round_2. None of the 35 individually selected broilers followed up in round_1 was positive for the same ESBL-E ST at all sampling times. All isolates carried CTX-M-1 group genes, confirmed as blaCTX-M-1 in 158 isolates. Further analysis of 36 isolates of different STs showed blaCTX-M-1 on IncI1/ST3 plasmids., Conclusions: The rapid dissemination of ESBL-E on this broiler farm was not due to the spread of one specific E. coli clone, but most likely the result of horizontal transfer of an IncI1/ST3 plasmid carrying blaCTX-M-1 resulting in a shift in the predominant ESBL-E population in broilers.
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- 2018
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14. Long-term Carriage of Extended-Spectrum β-Lactamase-Producing Escherichia coli and Klebsiella pneumoniae in the General Population in The Netherlands.
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van Duijkeren E, Wielders CCH, Dierikx CM, van Hoek AHAM, Hengeveld P, Veenman C, Florijn A, Lotterman A, Smit LAM, van Dissel JT, Maassen CBM, and de Greeff SC
- Subjects
- Adult, Bacterial Proteins genetics, Bacterial Typing Techniques, Carrier State microbiology, Cross-Sectional Studies, Escherichia coli enzymology, Escherichia coli genetics, Feces microbiology, Female, Genotype, Humans, Klebsiella pneumoniae enzymology, Klebsiella pneumoniae genetics, Longitudinal Studies, Male, Microbial Sensitivity Tests, Middle Aged, Multilocus Sequence Typing, Netherlands epidemiology, Phylogeny, Polymerase Chain Reaction, Risk Factors, Surveys and Questionnaires, Young Adult, beta-Lactamases genetics, Carrier State epidemiology, Escherichia coli isolation & purification, Escherichia coli Infections epidemiology, Klebsiella Infections epidemiology, Klebsiella pneumoniae isolation & purification
- Abstract
Background: This longitudinal study aimed to investigate (risk factors for) persistence of carriage and molecular characteristics of extended-spectrum and plasmid-encoded AmpC β-lactamase-producing (ESBL/pAmpC) Escherichia coli and Klebsiella pneumoniae (ESBL-E/K) in adults in the Dutch community., Methods: Following a cross-sectional study (ESBL-E/K prevalence, 4.5%), a subset of ESBL-E/K-positive (n = 76) and -negative (n = 249) individuals volunteered to provide 5 monthly fecal samples and questionnaires. ESBL-E/K was cultured using selective enrichment/culture, and multilocus sequence types (MLSTs) were determined. ESBL/pAmpC-genes were analyzed using polymerase chain reaction (PCR) and sequencing. Plasmids were characterized and subtyped by plasmid MLST. Risk factors for persistent carriage were analyzed using logistic regression., Results: Of the initially ESBL-E/K-positive participants, 25 of 76 (32.9%) remained positive in all subsequent samples; 51 of 76 persons (67.1%) tested ESBL-E/K negative at some time point during follow-up, of which 31 (40.8%) stayed negative throughout the longitudinal study. Carriers often carried the same ESBL gene and plasmid, but sometimes in different ESBL-E/K strains, indicative for horizontal transfer of plasmids. Of the 249 initially ESBL-E/K-negative participants, the majority (n = 218 [87.6%]) tested negative during 8 months of follow-up, whereas 31 of 249 (12.4%) participants acquired an ESBL-E/K. Escherichia coli phylogenetic group B2 and D and travel to ESBL high-prevalence countries were associated with prolonged carriage., Conclusions: ESBL-E/K carriage persisted for >8 months in 32.9% of the initially ESBL-positive individuals, while 12.4% of initially negative individuals acquired ESBL-E/K during the study. A single positive test result provides no accurate prediction for prolonged carriage. Acquisition/loss of ESBL-E/K does not seem to be a random process, but differs between bacterial genotypes.
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- 2018
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15. Molecular relatedness of ESBL/AmpC-producing Escherichia coli from humans, animals, food and the environment: a pooled analysis.
- Author
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Dorado-García A, Smid JH, van Pelt W, Bonten MJM, Fluit AC, van den Bunt G, Wagenaar JA, Hordijk J, Dierikx CM, Veldman KT, de Koeijer A, Dohmen W, Schmitt H, Liakopoulos A, Pacholewicz E, Lam TJGM, Velthuis AG, Heuvelink A, Gonggrijp MA, van Duijkeren E, van Hoek AHAM, de Roda Husman AM, Blaak H, Havelaar AH, Mevius DJ, and Heederik DJJ
- Subjects
- Animals, Birds, Disease Transmission, Infectious, Escherichia coli enzymology, Escherichia coli genetics, Escherichia coli isolation & purification, Humans, Netherlands, Poultry, Swine, Environmental Microbiology, Escherichia coli classification, Escherichia coli Infections microbiology, Escherichia coli Infections veterinary, Food Microbiology, Genetic Variation, beta-Lactamases metabolism
- Abstract
Background: In recent years, ESBL/AmpC-producing Escherichia coli (ESBL/AmpC-EC) have been isolated with increasing frequency from animals, food, environmental sources and humans. With incomplete and scattered evidence, the contribution to the human carriage burden from these reservoirs remains unclear., Objectives: To quantify molecular similarities between different reservoirs as a first step towards risk attribution., Methods: Pooled data on ESBL/AmpC-EC isolates were recovered from 35 studies in the Netherlands comprising >27 000 samples, mostly obtained between 2005 and 2015. Frequency distributions of ESBL/AmpC genes from 5808 isolates and replicons of ESBL/AmpC-carrying plasmids from 812 isolates were compared across 22 reservoirs through proportional similarity indices (PSIs) and principal component analyses (PCAs)., Results: Predominant ESBL/AmpC genes were identified in each reservoir. PCAs and PSIs revealed close human-animal ESBL/AmpC gene similarity between human farming communities and their animals (broilers and pigs) (PSIs from 0.8 to 0.9). Isolates from people in the general population had higher similarities to those from human clinical settings, surface and sewage water and wild birds (0.7-0.8), while similarities to livestock or food reservoirs were lower (0.3-0.6). Based on rarefaction curves, people in the general population had more diversity in ESBL/AmpC genes and plasmid replicon types than those in other reservoirs., Conclusions: Our 'One Health' approach provides an integrated evaluation of the molecular relatedness of ESBL/AmpC-EC from numerous sources. The analysis showed distinguishable ESBL/AmpC-EC transmission cycles in different hosts and failed to demonstrate a close epidemiological linkage of ESBL/AmpC genes and plasmid replicon types between livestock farms and people in the general population., (© The Author 2017. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2018
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16. Occurrence and molecular characteristics of ESBL/AmpC-producing Escherichia coli in faecal samples from horses in an equine clinic.
- Author
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Apostolakos I, Franz E, van Hoek AHAM, Florijn A, Veenman C, Sloet-van Oldruitenborgh-Oosterbaan MM, Dierikx C, and van Duijkeren E
- Subjects
- Animals, Bacterial Proteins biosynthesis, Cross Infection epidemiology, Cross Infection microbiology, Cross Infection veterinary, Escherichia coli genetics, Escherichia coli Infections microbiology, Horses, Microbial Sensitivity Tests, Multilocus Sequence Typing, Netherlands, Phylogeny, Plasmids genetics, Polymerase Chain Reaction, beta-Lactamases biosynthesis, beta-Lactamases isolation & purification, Bacterial Proteins genetics, Escherichia coli enzymology, Escherichia coli isolation & purification, Escherichia coli Infections veterinary, Feces microbiology, Horse Diseases microbiology, beta-Lactamases genetics
- Abstract
Objectives: To investigate the occurrence and characteristics of ESBL/AmpC-producing Escherichia coli in faecal samples from horses at one equine clinic in the Netherlands., Methods: A total of 91 horses, including residents and patients, were sampled. ESBL/AmpC-producing E. coli were identified by a combination disc diffusion test. Phylogenetic groups and MLST were determined. ESBL/AmpC genes were analysed using PCR and sequencing. Plasmids were characterized by transformation and PCR-based replicon typing. Subtyping of plasmids was done by plasmid MLST., Results: At least one E. coli isolate with a confirmed ESBL/AmpC gene was found in samples from 76 horses (84%). Although phylogenetic group B1 E. coli bla CTX-M-1 predominated, a diverse E. coli population was found, indicating that clonal nosocomial spread was not the only reason for the high occurrence found. MLST analysis revealed the presence of 47 E. coli STs, organized in four clusters of genetically related strains. ST10, ST641, ST1079 and ST1250 were most commonly found. With regard to the genes, bla CTX-M-1 was most prevalent ( n = 91), followed by bla CTX-M-2 ( n = 26). The most frequently found plasmid type was IncHI1, but plasmids belonging to the IncF, IncI1 and IncN groups were also identified., Conclusions: A high occurrence of ESBL-producing E. coli in faecal samples was found among horses in an equine clinic and the variety of STs, ESBL genes and plasmid types suggests nosocomial transmission. ESBL E. coli can cause difficult-to-treat infections in horses and prudent use of antimicrobials is warranted. A further assessment of the risks of transmission to persons in close contact with horses, such as caretakers or veterinarians, is crucial., (© The Author 2017. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please email: journals.permissions@oup.com.)
- Published
- 2017
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17. Ten years later: still a high prevalence of MRSA in slaughter pigs despite a significant reduction in antimicrobial usage in pigs the Netherlands.
- Author
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Dierikx CM, Hengeveld PD, Veldman KT, de Haan A, van der Voorde S, Dop PY, Bosch T, and van Duijkeren E
- Subjects
- Abattoirs, Animal Husbandry standards, Animals, Bacteriological Techniques, Carrier State epidemiology, Carrier State microbiology, Cluster Analysis, Genotype, Health Policy, Microbial Sensitivity Tests, Molecular Diagnostic Techniques, Molecular Typing, Nasal Cavity microbiology, Netherlands epidemiology, Prevalence, Staphylococcal Infections epidemiology, Staphylococcal Infections microbiology, Animal Husbandry methods, Anti-Bacterial Agents therapeutic use, Carrier State veterinary, Drug Utilization standards, Methicillin-Resistant Staphylococcus aureus isolation & purification, Staphylococcal Infections veterinary, Swine microbiology
- Abstract
Objectives: In 2005, 39% of pigs and 81% of the slaughter batches at Dutch slaughterhouses were MRSA positive. The objective of the present study was to investigate whether the 50% reduction of antimicrobial usage in finishing pigs in 2014 compared with 2009 in the Netherlands has led to a lower MRSA prevalence among Dutch slaughter pigs., Methods: Nasal swabs from eight slaughter batches of on average 10 animals at seven slaughterhouses were taken and cultured using method 1, which was used in 2005, and method 2, using high-salt pre-enrichment. Suspected isolates were confirmed by PCR for two Staphylococcus aureus-specific DNA fragments and the mecA gene. A subset of MRSA isolates were further investigated using spa typing, multiple-locus variable number of tandem repeat analysis (MLVA) and antimicrobial susceptibility testing., Results: Using methods 1 and 2, we found 461 of 558 (83%) and 552 of 558 (99%) of the pigs to carry MRSA in their nares, respectively. All 56 slaughter batches were MRSA positive. All MRSA isolates belonged to the livestock-associated MLVA complex 398, had a non-WT phenotype for tetracycline and spa type t011 predominated., Conclusions: A very high prevalence of nasal MRSA carriage was found in Dutch slaughter pigs and therefore the reduction in antimicrobial usage at the national level has not yet had an effect on the MRSA carriage rate of pigs entering the slaughterhouse. Therefore, there is still an increased risk of MRSA carriage for personnel working at pig slaughterhouses, particularly those having contact with living animals. Method 2, using high salt pre-enrichment, detected more MRSA-positive pigs and is currently the preferred method for screening of MRSA in livestock in the Netherlands., (© The Author 2016. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2016
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18. Diversity of STs, plasmids and ESBL genes among Escherichia coli from humans, animals and food in Germany, the Netherlands and the UK.
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Day MJ, Rodríguez I, van Essen-Zandbergen A, Dierikx C, Kadlec K, Schink AK, Wu G, Chattaway MA, DoNascimento V, Wain J, Helmuth R, Guerra B, Schwarz S, Threlfall J, Woodward MJ, Coldham N, Mevius D, and Woodford N
- Subjects
- Animals, Escherichia coli classification, Escherichia coli enzymology, Escherichia coli isolation & purification, Germany, Humans, Multilocus Sequence Typing, Netherlands, Polymerase Chain Reaction, United Kingdom, Bacterial Toxins genetics, Enterotoxins genetics, Escherichia coli genetics, Escherichia coli Infections microbiology, Escherichia coli Infections veterinary, Escherichia coli Proteins genetics, Food Microbiology, Plasmids analysis, beta-Lactamases genetics
- Abstract
Objectives: This study aimed to compare ESBL-producing Escherichia coli causing infections in humans with infecting or commensal isolates from animals and isolates from food of animal origin in terms of the strain types, the ESBL gene present and the plasmids that carry the respective ESBL genes., Methods: A collection of 353 ESBL-positive E. coli isolates from the UK, the Netherlands and Germany were studied by MLST and ESBL genes were identified. Characterization of ESBL gene-carrying plasmids was performed using PCR-based replicon typing. Moreover, IncI1-Iγ and IncN plasmids were characterized by plasmid MLST., Results: The ESBL-producing E. coli represented 158 different STs with ST131, ST10 and ST88 being the most common. Overall, blaCTX-M-1 was the most frequently detected ESBL gene, followed by blaCTX-M-15, which was the most common ESBL gene in the human isolates. The most common plasmid replicon type overall was IncI1-Iγ followed by multiple IncF replicons., Conclusions: ESBL genes were present in a wide variety of E. coli STs. IncI1-Iγ plasmids that carried the blaCTX-M-1 gene were widely disseminated amongst STs in isolates from animals and humans, whereas other plasmids and STs appeared to be more restricted to isolates from specific hosts., (© The Author 2016. Published by Oxford University Press on behalf of the British Society for Antimicrobial Chemotherapy. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.)
- Published
- 2016
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19. Increasing prevalence and diversity of ESBL/AmpC-type β-lactamase genes in Escherichia coli isolated from veal calves from 1997 to 2010.
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Hordijk J, Wagenaar JA, van de Giessen A, Dierikx C, van Essen-Zandbergen A, Veldman K, Kant A, and Mevius D
- Subjects
- Animals, Bacteriological Techniques, Carrier State epidemiology, Carrier State microbiology, Cattle, Escherichia coli isolation & purification, Escherichia coli Infections epidemiology, Escherichia coli Infections microbiology, Feces microbiology, Polymerase Chain Reaction, Prevalence, Sequence Analysis, DNA, beta-Lactamases classification, Carrier State veterinary, Escherichia coli enzymology, Escherichia coli Infections veterinary, Genetic Variation, beta-Lactamases genetics
- Abstract
Objectives: Several studies on faecal carriage of extended-spectrum β-lactamase (ESBL)/AmpC-producing Escherichia coli have been performed in cattle, but little is known about faecal carriage in veal calves. This study describes the prevalence and molecular characteristics of ESBL/AmpC genes in E. coli isolated from faecal samples of veal calves from 1997 to 2010., Methods: Pooled faecal samples were inoculated using selective enrichment broth and subsequently selective MacConkey agar. All isolates with reduced susceptibility to cefotaxime were screened by PCR and sequencing analysis for the presence of ESBL/AmpC genes., Results: The prevalence of E. coli with reduced susceptibility to cefotaxime showed a discontinuous increasing trend, ranging from 4% in 1998 and 1999 to 39% in 2010. Promoter mutations of the chromosomal ampC gene were present in all years. In 2000, ESBL genes blaCTX-M-1, blaTEM-52 and blaTEM-20 were first observed. Before 2005 the majority of E. coli with reduced susceptibility to cefotaxime harboured ampC promoter mutations. From 2005 onwards the majority harboured blaCTX-M genes, of which blaCTX-M-1 was the most abundant, followed by blaCTX-M-14 and blaCTX-M-15. The diversity of blaCTX-M genes gradually increased from one variant in 2000 to six variants in 2010. The prevalence of blaTEM-52 was relatively low, but it was detected from 2000 onwards. blaCMY and blaSHV were found sporadically., Conclusions: The prevalence and molecular diversity of genes encoding cefotaxime resistance in E. coli isolated from veal calves over a 14 year period showed an increasing trend. From 2005 onwards, blaCTX-M genes were most abundant, especially blaCTX-M-1.
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- 2013
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20. Extended-spectrum-β-lactamase- and AmpC-β-lactamase-producing Escherichia coli in Dutch broilers and broiler farmers.
- Author
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Dierikx C, van der Goot J, Fabri T, van Essen-Zandbergen A, Smith H, and Mevius D
- Subjects
- Animals, Animals, Domestic, Bacterial Proteins isolation & purification, Cloaca microbiology, Escherichia coli growth & development, Escherichia coli pathogenicity, Escherichia coli Infections enzymology, Escherichia coli Infections epidemiology, Escherichia coli Infections microbiology, Feces microbiology, Humans, Prevalence, beta-Lactamases isolation & purification, Bacterial Proteins biosynthesis, Chickens microbiology, Escherichia coli enzymology, Occupational Exposure adverse effects, beta-Lactamases biosynthesis
- Abstract
Objectives: The aim of this study was to establish the prevalence of extended-spectrum β-lactamase (ESBL)- and AmpC β-lactamase-producing Escherichia coli at Dutch broiler farms and in farmers and to compare ESBL/AmpC-producing isolates from farmers and their animals., Methods: Twenty-five to 41 cloacal swabs collected from broilers at each of 26 farms and 18 faecal samples from 18 broiler farmers were analysed for determination of the presence of ESBL/AmpC-producing E. coli. ESBL/AmpC genes were characterized by microarray, PCR and sequencing. Plasmids were characterized by transformation and PCR-based replicon typing. Subtyping of plasmids was done by plasmid multilocus sequence typing or restriction fragment length polymorphism. E. coli genotypes were determined by multilocus sequence typing., Results: Birds from all farms were positive for ESBL/AmpC-producing E. coli, and on 22/26 farms the within-farm prevalence was ≥ 80%. Six of 18 farmers carried isolates containing ESBL/AmpC genes bla(CTX-M-1), bla(CMY-2) and/or bla(SHV-12), which were also present in the samples from their animals. In five of these isolates, the genes were located on identical plasmid families [IncI1 (n = 3), IncK (n = 1) or IncN (n = 1)], and in isolates from two farmers the genes were carried on identical plasmid subtypes (IncI1 ST12 and IncN ST1, where ST stands for sequence type) as in the isolates from their animals., Conclusions: This study shows a high prevalence of birds carrying ESBL/AmpC-producing E. coli at Dutch broiler farms and a high prevalence of ESBL/AmpC-producing E. coli in farmers. This is undesirable due to the risk this poses to human health. Future research should focus on identification of the source of these isolates in the broiler production chain to make interventions resulting in reduction of these isolates possible.
- Published
- 2013
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21. Characterization of multidrug-resistant, qnrB2-positive and extended-spectrum-beta-lactamase-producing Salmonella Concord and Salmonella Senftenberg isolates.
- Author
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Veldman K, Dierikx C, van Essen-Zandbergen A, van Pelt W, and Mevius D
- Subjects
- Adult, Bacterial Typing Techniques, Child, Child, Preschool, Cluster Analysis, Conjugation, Genetic, Electrophoresis, Gel, Pulsed-Field, Female, Genes, Bacterial, Genotype, Humans, Male, Microarray Analysis methods, Netherlands, Plasmids analysis, Polymerase Chain Reaction, Salmonella genetics, Salmonella isolation & purification, Sequence Analysis, DNA, Bacterial Proteins biosynthesis, Bacterial Proteins genetics, Drug Resistance, Multiple, Bacterial, Salmonella drug effects, Salmonella enzymology, Salmonella Infections microbiology, beta-Lactamases biosynthesis
- Abstract
Objectives: To characterize plasmids and resistance genes of multidrug-resistant (MDR) Salmonella Senftenberg and Salmonella Concord isolated from patients in the Netherlands., Methods: The resistance genes of four MDR Salmonella isolates (three Salmonella Concord and one Salmonella Senftenberg) were identified by miniaturized microarray, PCR and sequencing. Plasmids were characterized by S1 nuclease-PFGE and PCR-based replicon typing (PBRT). Linkage between plasmids and genes was determined by conjugation experiments and microarray analysis. The genetic relationship between the three Salmonella Concord isolates was determined by XbaI-PFGE., Results: A large variety of resistance genes was detected, including qnrB2 and the beta-lactamase genes bla(TEM-1) and bla(SHV-12) in all isolates; moreover all Salmonella Concord isolates also harboured bla(CTX-M-15). Salmonella Senftenberg harboured a large IncHI2 plasmid. The three Salmonella Concord isolates harboured two large plasmids typed as IncHI2 and IncA/C., Conclusions: We detected the first plasmid-mediated MDR Salmonella isolates in the Netherlands harbouring both qnr and extended-spectrum beta-lactamase (ESBL) genes. In Salmonella Senftenberg one large plasmid (IncHI2) and in Salmonella Concord two large plasmids (IncHI2 and IncA/C) were responsible for the multidrug resistance.
- Published
- 2010
- Full Text
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