1. Emergence and maintenance of actionable genetic drivers at medulloblastoma relapse
- Author
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Krzysztof Zakrzewski, Matthew Bashton, Louise Pease, Stacey Richardson, Yura Grabovksa, Maria Lastowska, Thomas S. Jacques, Rebecca M Hill, Nicolas André, Maria Vinci, Abhijit Joshi, Jordan R. Hansford, Christopher Kui, Stephen B. Wharton, Debbie Hicks, Jessica C Pickles, Edward C. Schwalbe, Vijay Ramaswamy, Mette Jorgensen, Steven C. Clifford, Claire Keeling, Stefan M. Pfister, Daniel Williamson, Dominique Figarella-Branger, Antony Michalski, Simon Bailey, Barry Pizer, Stephen Crosier, Michael D. Taylor, Janet C. Lindsey, Institut de neurophysiopathologie (INP), and Aix Marseille Université (AMU)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
Oncology ,Cancer Research ,medicine.medical_specialty ,DNA Copy Number Variations ,Selective maintenance ,[SDV]Life Sciences [q-bio] ,Genomics ,Biology ,Gene mutation ,medulloblastoma ,subgroups ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,genomics ,medicine ,AcademicSubjects/MED00300 ,Humans ,Copy-number variation ,Cerebellar Neoplasms ,030304 developmental biology ,relapse ,Medulloblastoma ,0303 health sciences ,C100 ,Wnt signaling pathway ,drivers ,A300 ,C400 ,medicine.disease ,3. Good health ,Genetic divergence ,030220 oncology & carcinogenesis ,Basic and Translational Investigations ,Mutation ,Cohort ,AcademicSubjects/MED00310 ,Neurology (clinical) ,Neoplasm Recurrence, Local - Abstract
Background Less than 5% of medulloblastoma (MB) patients survive following failure of contemporary radiation-based therapies. Understanding the molecular drivers of medulloblastoma relapse (rMB) will be essential to improve outcomes. Initial genome-wide investigations have suggested significant genetic divergence of the relapsed disease. Methods We undertook large-scale integrated characterization of the molecular features of rMB—molecular subgroup, novel subtypes, copy number variation (CNV), and driver gene mutation. 119 rMBs were assessed in comparison with their paired diagnostic samples (n = 107), alongside an independent reference cohort sampled at diagnosis (n = 282). rMB events were investigated for association with outcome post-relapse in clinically annotated patients (n = 54). Results Significant genetic evolution occurred over disease-course; 40% of putative rMB drivers emerged at relapse and differed significantly between molecular subgroups. Non-infant MBSHH displayed significantly more chromosomal CNVs at relapse (TP53 mutation-associated). Relapsed MBGroup4 demonstrated the greatest genetic divergence, enriched for targetable (eg, CDK amplifications) and novel (eg, USH2A mutations) events. Importantly, many hallmark features of MB were stable over time; novel subtypes (>90% of tumors) and established genetic drivers (eg, SHH/WNT/P53 mutations; 60% of rMB events) were maintained from diagnosis. Critically, acquired and maintained rMB events converged on targetable pathways which were significantly enriched at relapse (eg, DNA damage signaling) and specific events (eg, 3p loss) predicted survival post-relapse. Conclusions rMB is characterised by the emergence of novel events and pathways, in concert with selective maintenance of established genetic drivers. Together, these define the actionable genetic landscape of rMB and provide a basis for improved clinical management and development of stratified therapeutics, across disease-course.
- Published
- 2022